Mock Version: 6.1
Mock Version: 6.1
Mock Version: 6.1
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/inferit-10_0-extras-build-100646-187554/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffe7d41a30>timeout=86400uid=990gid=135user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9in9dd2j:/etc/resolv.conf', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9in9dd2j:/etc/resolv.conf', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a7ab5e481bfd4ef0969cae1975d499d3', '-D', '/var/lib/mock/inferit-10_0-extras-build-100646-187554/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9in9dd2j:/etc/resolv.conf', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/R.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1740700800
Wrote: /builddir/build/SRPMS/R-4.4.3-1.el10_0.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/inferit-10_0-extras-build-100646-187554/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffe7d41a30>timeout=86400uid=990gid=135user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9in9dd2j:/etc/resolv.conf', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9in9dd2j:/etc/resolv.conf', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3d0d36cbabc047d5a2a3aeebed5e3f13', '-D', '/var/lib/mock/inferit-10_0-extras-build-100646-187554/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9in9dd2j:/etc/resolv.conf', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/R.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1740700800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.8BhQeP
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf R-4.4.3
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/R-4.4.3.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd R-4.4.3
+ rm -rf /builddir/build/BUILD/R-4.4.3-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/R-4.4.3-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (R-3.3.0-fix-java_path-in-javareconf.patch):
+ echo 'Patch #0 (R-3.3.0-fix-java_path-in-javareconf.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .fixpath --fuzz=0
patching file src/scripts/javareconf.in
Hunk #1 succeeded at 79 (offset 1 line).
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.pBksnT
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd R-4.4.3
+ sed -i -e '/R_LIBS_SITE=/s/^/#/g' etc/Renviron.in
+ echo 'R_LIBS_SITE=${R_LIBS_SITE-'\''/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib64/R/library:/usr/share/R/library'\''}'
+ export R_RD4PDF=times,hyper
+ R_RD4PDF=times,hyper
+ sed -i 's|inconsolata,||g' etc/Renviron.in
+ export R_PDFVIEWER=/usr/bin/xdg-open
+ R_PDFVIEWER=/usr/bin/xdg-open
+ export R_BROWSER=/usr/bin/xdg-open
+ R_BROWSER=/usr/bin/xdg-open
+ export JAVA_HOME=/usr/lib/jvm/jre
+ JAVA_HOME=/usr/lib/jvm/jre
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2025-02-28 11:01:26.000000000 +0300
+++ ./configure	2025-04-10 12:07:50.275463824 +0300
@@ -12172,7 +12172,7 @@
 # Transform an extracted symbol line into a proper C declaration.
 # Some systems (esp. on ia64) link data and code symbols differently,
 # so use this general approach.
-lt_cv_sys_global_symbol_to_cdecl="sed -n"\
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 $lt_cdecl_hook\
 " -e 's/^T .* \(.*\)$/extern int \1();/p'"\
 " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'"
@@ -61210,7 +61210,7 @@
 compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
 GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./tools/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./tools/config.guess
++ basename ./tools/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./tools/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './tools/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./tools/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./tools/config.sub
++ basename ./tools/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./tools/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './tools/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./tools/ltmain.sh
+ tee CONFIGURE.log
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=aarch64-redhat-linux-gnu --host=aarch64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info rdocdir=/usr/share/doc/R rincludedir=/usr/include/R rsharedir=/usr/share/R --with-system-tre --with-blas=flexiblas --with-lapack --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh --enable-R-shlib --enable-prebuilt-html --enable-R-profiling --enable-memory-profiling
configure: WARNING: unrecognized options: --disable-dependency-tracking
checking build system type... aarch64-redhat-linux-gnu
checking host system type... aarch64-redhat-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /usr/bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /usr/bin/sed
checking for which... /usr/bin/which
checking for less... /usr/bin/less
checking for gtar... /usr/bin/gtar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... /usr/sbin/install-info
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /usr/bin/gzip
checking for bzip2... /usr/bin/bzip2
using default browser ... /usr/bin/xdg-open
checking for /usr/bin/xdg-open... /usr/bin/xdg-open
checking for working aclocal... found
checking for working autoconf... found
checking for working autoheader... found
checking for bison... no
checking for byacc... no
checking for yacc... no
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for aarch64-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking for sys/time.h... yes
checking for sys/param.h... yes
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking how to run the C preprocessor... gcc -E
looking for a modern Fortran compiler
checking for aarch64-redhat-linux-gnu-gfortran... no
checking for aarch64-redhat-linux-gnu-g95... no
checking for aarch64-redhat-linux-gnu-xlf95... no
checking for aarch64-redhat-linux-gnu-f95... no
checking for aarch64-redhat-linux-gnu-fort... no
checking for aarch64-redhat-linux-gnu-ifort... no
checking for aarch64-redhat-linux-gnu-ifc... no
checking for aarch64-redhat-linux-gnu-efc... no
checking for aarch64-redhat-linux-gnu-pgfortran... no
checking for aarch64-redhat-linux-gnu-pgf95... no
checking for aarch64-redhat-linux-gnu-lf95... no
checking for aarch64-redhat-linux-gnu-ftn... no
checking for aarch64-redhat-linux-gnu-nagfor... no
checking for aarch64-redhat-linux-gnu-xlf90... no
checking for aarch64-redhat-linux-gnu-f90... no
checking for aarch64-redhat-linux-gnu-pgf90... no
checking for aarch64-redhat-linux-gnu-pghpf... no
checking for aarch64-redhat-linux-gnu-epcf90... no
checking for aarch64-redhat-linux-gnu-g77... no
checking for aarch64-redhat-linux-gnu-xlf... no
checking for aarch64-redhat-linux-gnu-f77... no
checking for aarch64-redhat-linux-gnu-frt... no
checking for aarch64-redhat-linux-gnu-pgf77... no
checking for aarch64-redhat-linux-gnu-cf77... no
checking for aarch64-redhat-linux-gnu-fort77... no
checking for aarch64-redhat-linux-gnu-fl32... no
checking for aarch64-redhat-linux-gnu-af77... no
checking for gfortran... gfortran
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    can compile C++ code... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc accepts -fvisibility... yes
checking whether g++ accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for aarch64-redhat-linux-gnu-gcc... no
checking for aarch64-redhat-linux-gnu-objcc... no
checking for aarch64-redhat-linux-gnu-objc... no
checking for aarch64-redhat-linux-gnu-cc... no
checking for aarch64-redhat-linux-gnu-CC... no
checking for aarch64-redhat-linux-gnu-clang... no
checking for gcc... gcc
checking whether the compiler supports GNU Objective C... no
checking whether gcc accepts -g... no
checking whether gcc -std=gnu17 is a C17 compiler... yes
checking whether gcc -std=gnu23 is a C23 compiler... yes
checking whether gcc -std=gnu90 is a C90 compiler... yes
checking whether gcc -std=gnu99 is a C99 compiler... yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert aarch64-redhat-linux-gnu file names to aarch64-redhat-linux-gnu format... func_convert_file_noop
checking how to convert aarch64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for aarch64-redhat-linux-gnu-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for aarch64-redhat-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for aarch64-redhat-linux-gnu-ar... (cached) ar
checking for archiver @FILE support... @
checking for aarch64-redhat-linux-gnu-strip... no
checking for strip... strip
checking for aarch64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for gawk... gawk
checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 12178:  -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory
ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for aarch64-redhat-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking for readline/history.h... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for tilde_expand_word... yes
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking for fcntl.h... yes
checking for glob.h... yes
checking for grp.h... yes
checking for pwd.h... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking for sys/resource.h... yes
checking for sys/select.h... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/time.h... (cached) yes
checking for sys/times.h... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking for utime.h... yes
checking for arpa/inet.h... yes
checking for elf.h... yes
checking for features.h... yes
checking for floatingpoint.h... no
checking for langinfo.h... yes
checking for netdb.h... yes
checking for netinet/in.h... yes
checking for sys/param.h... (cached) yes
checking for stdalign.h... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... yes
checking for locale.h... yes
checking for stdarg.h... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for egrep -e... (cached) /usr/bin/grep -E
checking for GNU C library with version >= 2... yes
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of double... 8
checking size of size_t... 8
checking for C stack direction... down
checking size of long double... 16
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc supports -c -o FILE.lo... yes
checking for gcc option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/lib/gcc/aarch64-redhat-linux/14 -L/usr/lib/gcc/aarch64-redhat-linux/14/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-redhat-linux/14/../../.. -lgfortran -lm
checking how to get verbose linking output from gcc... -v
checking for C libraries of gcc...  -L/usr/lib/gcc/aarch64-redhat-linux/14 -L/usr/lib/gcc/aarch64-redhat-linux/14/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-redhat-linux/14/../../.. -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc agree on int and double... yes
checking whether gfortran and gcc agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... no
checking for type of 'hidden' Fortran character lengths... size_t
checking for xmkmf... no
checking whether g++  supports C++11 features with -std=gnu++11... yes
checking whether g++  supports C++14 features with -std=gnu++14... yes
checking whether g++  supports C++17 features with -std=gnu++17... yes
checking whether g++  supports C++20 features with -std=gnu++20... yes
checking whether g++  supports C++23 features with -std=gnu++23... yes
checking whether g++ -std=gnu++17 can compile ObjC++... no
checking whether  can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking for g++ -std=gnu++17 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwnam exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether setrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking for thread.h... no
checking whether thr_stksegment exists and is declared... no
checking for stpcpy... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime, gmtime, localtime work correctly in 2020... yes
checking whether mktime sets errno... yes
checking whether mktime works correctly after 2037... yes
checking whether mktime works correctly before 1902... yes
checking whether mktime works correctly in 1969... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for dgemm_ in -lflexiblas... yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking whether iconv accepts "CP1252"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for wchar.h... (cached) yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking whether wcwidth exists and is declared... yes
checking whether wcswidth exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... yes
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking for X11/Xmu/Atoms.h... yes
checking for XmuInternAtom in -lXmu... yes
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for /usr/lib64/tclConfig.sh... /usr/lib64/tclConfig.sh
checking for /usr/lib64/tkConfig.sh... /usr/lib64/tkConfig.sh
checking for tcl.h... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking for rpc/types.h... no
checking for tirpc/rpc/types.h... yes
checking for tirpc/rpc/xdr.h... yes
checking for XDR library... -ltirpc
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for libdeflate.h... yes
checking for libdeflate_alloc_compressor in -ldeflate... yes
yes
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking if PCRE2 has Unicode support... yes
checking whether PCRE support suffices... yes
checking for tre_regncompb in -ltre... yes
checking for tre/tre.h... yes
checking for curl-config... /usr/bin/curl-config
checking libcurl version ... 8.9.1
checking for curl/curl.h... yes
checking if libcurl is >= 7.28.0... yes
checking if libcurl supports https... yes
checking if pkg-config knows about libjpeg... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if pkg-config knows about libpng... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking if pkg-config knows about libtiff... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for gcc option to enable large file support... none needed
checking for declarations of fseeko and ftello... yes
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for lpr... no
checking for lp... no
checking for paperconf... false
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... (cached) -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... yes
Configuring src/extra/intl directory
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for aarch64-redhat-linux-gnu-ranlib... ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... no
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... (cached) yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... no
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory
checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
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config.status: creating src/library/tools/DESCRIPTION
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config.status: creating src/library/utils/DESCRIPTION
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config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
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config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
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config.status: creating src/scripts/Rcmd
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config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
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config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands
configure: WARNING: unrecognized options: --disable-dependency-tracking
R is now configured for aarch64-redhat-linux-gnu
  Source directory:            .
  Installation directory:      /usr
  C compiler:                  gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   
  Fortran fixed-form compiler: gfortran  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules 
  Default C++ compiler:        g++ -std=gnu++17  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   
  C++11 compiler:              g++ -std=gnu++11  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   
  C++14 compiler:              g++ -std=gnu++14  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   
  C++17 compiler:              g++ -std=gnu++17  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   
  C++20 compiler:              g++ -std=gnu++20  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   
  C++23 compiler:              g++ -std=gnu++23  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   
  Fortran free-form compiler:  gfortran  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules 
  Obj-C compiler:	        
  Interfaces supported:        X11, tcltk
  External libraries:          pcre2, readline, BLAS(FlexiBlas), LAPACK(in blas), tre, curl, libdeflate
  Additional capabilities:     PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:             shared R library, R profiling, memory profiling, static HTML, libdeflate for lazyload
  Capabilities skipped:        
  Options not enabled:         shared BLAS
  Recommended packages:        yes
+ cat CONFIGURE.log
+ grep -A30 'R is now' -
+ make V=1
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/m4'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/m4'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/tools'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/tools'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/doc'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/doc/html'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/doc/html'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/doc/manual'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/doc'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/etc'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/etc'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/share'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/share'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/src'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/scripts'
creating src/scripts/R.fe
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/scripts'
mkdir -p -- ../../bin
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/scripts'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/scripts'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/include'
mkdir -p -- ../../include
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/include/R_ext'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/include'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/extra'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/extra'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/appl'
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c integrate.c -o integrate.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c interv.c -o interv.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c maxcol.c -o maxcol.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c optim.c -o optim.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pretty.c -o pretty.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c uncmin.c -o uncmin.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dchdc.f -o dchdc.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dpbfa.f -o dpbfa.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dpbsl.f -o dpbsl.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dpoco.f -o dpoco.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dpodi.f -o dpodi.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dpofa.f -o dpofa.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dposl.f -o dposl.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dqrdc.f -o dqrdc.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dqrdc2.f -o dqrdc2.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dqrls.f -o dqrls.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dqrsl.f -o dqrsl.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dqrutl.f -o dqrutl.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dsvdc.f -o dsvdc.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dtrco.f -o dtrco.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o  
ranlib libappl.a
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/appl'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/appl'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/nmath'
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mlutils.c -o mlutils.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c d1mach.c -o d1mach.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c i1mach.c -o i1mach.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fmax2.c -o fmax2.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fmin2.c -o fmin2.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fprec.c -o fprec.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fround.c -o fround.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c ftrunc.c -o ftrunc.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sign.c -o sign.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fsign.c -o fsign.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c imax2.c -o imax2.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c imin2.c -o imin2.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c chebyshev.c -o chebyshev.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c log1p.c -o log1p.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c lgammacor.c -o lgammacor.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gammalims.c -o gammalims.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c stirlerr.c -o stirlerr.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c bd0.c -o bd0.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gamma.c -o gamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c lgamma.c -o lgamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c beta.c -o beta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c lbeta.c -o lbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c polygamma.c -o polygamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cospi.c -o cospi.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c bessel_i.c -o bessel_i.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c bessel_j.c -o bessel_j.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c bessel_k.c -o bessel_k.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c bessel_y.c -o bessel_y.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c choose.c -o choose.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c snorm.c -o snorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sexp.c -o sexp.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dgamma.c -o dgamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pgamma.c -o pgamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qgamma.c -o qgamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rgamma.c -o rgamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dbeta.c -o dbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pbeta.c -o pbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qbeta.c -o qbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rbeta.c -o rbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dunif.c -o dunif.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c punif.c -o punif.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qunif.c -o qunif.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c runif.c -o runif.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dnorm.c -o dnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pnorm.c -o pnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qnorm.c -o qnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rnorm.c -o rnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dlnorm.c -o dlnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c plnorm.c -o plnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qlnorm.c -o qlnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rlnorm.c -o rlnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c df.c -o df.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pf.c -o pf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qf.c -o qf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rf.c -o rf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dnf.c -o dnf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dt.c -o dt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pt.c -o pt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qt.c -o qt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rt.c -o rt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dnt.c -o dnt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dchisq.c -o dchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pchisq.c -o pchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qchisq.c -o qchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rchisq.c -o rchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rnchisq.c -o rnchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dbinom.c -o dbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pbinom.c -o pbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qbinom.c -o qbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rbinom.c -o rbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rmultinom.c -o rmultinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dcauchy.c -o dcauchy.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pcauchy.c -o pcauchy.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qcauchy.c -o qcauchy.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rcauchy.c -o rcauchy.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dexp.c -o dexp.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pexp.c -o pexp.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qexp.c -o qexp.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rexp.c -o rexp.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dgeom.c -o dgeom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pgeom.c -o pgeom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qgeom.c -o qgeom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rgeom.c -o rgeom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dhyper.c -o dhyper.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c phyper.c -o phyper.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qhyper.c -o qhyper.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rhyper.c -o rhyper.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dnbinom.c -o dnbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pnbinom.c -o pnbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qnbinom.c -o qnbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rnbinom.c -o rnbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dpois.c -o dpois.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c ppois.c -o ppois.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qpois.c -o qpois.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rpois.c -o rpois.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dweibull.c -o dweibull.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pweibull.c -o pweibull.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qweibull.c -o qweibull.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rweibull.c -o rweibull.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dlogis.c -o dlogis.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c plogis.c -o plogis.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qlogis.c -o qlogis.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rlogis.c -o rlogis.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dnchisq.c -o dnchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pnchisq.c -o pnchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qnchisq.c -o qnchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dnbeta.c -o dnbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pnbeta.c -o pnbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qnbeta.c -o qnbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pnf.c -o pnf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pnt.c -o pnt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qnf.c -o qnf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qnt.c -o qnt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c ptukey.c -o ptukey.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qtukey.c -o qtukey.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c toms708.c -o toms708.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c wilcox.c -o wilcox.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/nmath'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/nmath'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c Rembedded.c -o Rembedded.o
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dynload.c -o dynload.o
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c system.c -o system.o
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection      -c sys-unix.c -o sys-unix.o
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sys-std.c -o sys-std.o
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/unix'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   -DR_HOME='"/builddir/build/BUILD/R-4.4.3"' \
  -o Rscript ./Rscript.c
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/unix'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/unix'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making altclasses.d from altclasses.c
making altrep.d from altrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making clippath.d from clippath.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making flexiblas.d from flexiblas.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making machine.d from machine.c
making main.d from main.c
making mapply.d from mapply.c
making mask.d from mask.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making patterns.d from patterns.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/main'
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c CommandLineArgs.c -o CommandLineArgs.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c Rdynload.c -o Rdynload.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c Renviron.c -o Renviron.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c RNG.c -o RNG.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c agrep.c -o agrep.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c altclasses.c -o altclasses.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c altrep.c -o altrep.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c apply.c -o apply.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c arithmetic.c -o arithmetic.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c array.c -o array.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c attrib.c -o attrib.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c bind.c -o bind.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c builtin.c -o builtin.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c character.c -o character.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c clippath.c -o clippath.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coerce.c -o coerce.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c colors.c -o colors.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c complex.c -o complex.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c connections.c -o connections.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c context.c -o context.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cum.c -o cum.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dcf.c -o dcf.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c datetime.c -o datetime.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c debug.c -o debug.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c deparse.c -o deparse.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c devices.c -o devices.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dotcode.c -o dotcode.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dounzip.c -o dounzip.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dstruct.c -o dstruct.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c duplicate.c -o duplicate.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c edit.c -o edit.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c engine.c -o engine.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c envir.c -o envir.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c errors.c -o errors.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c eval.c -o eval.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c flexiblas.c -o flexiblas.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c format.c -o format.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gevents.c -o gevents.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gram.c -o gram.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gram-ex.c -o gram-ex.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c graphics.c -o graphics.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c grep.c -o grep.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c identical.c -o identical.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c inlined.c -o inlined.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c inspect.c -o inspect.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c internet.c -o internet.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c iosupport.c -o iosupport.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c lapack.c -o lapack.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c list.c -o list.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c localecharset.c -o localecharset.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c logic.c -o logic.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c machine.c -o machine.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c main.c -o main.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mapply.c -o mapply.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mask.c -o mask.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c match.c -o match.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c memory.c -o memory.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c names.c -o names.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c objects.c -o objects.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c options.c -o options.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c paste.c -o paste.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c patterns.c -o patterns.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c platform.c -o platform.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c plot.c -o plot.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c plot3d.c -o plot3d.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c plotmath.c -o plotmath.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c print.c -o print.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c printarray.c -o printarray.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c printvector.c -o printvector.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c printutils.c -o printutils.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qsort.c -o qsort.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c radixsort.c -o radixsort.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c random.c -o random.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c raw.c -o raw.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c registration.c -o registration.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c relop.c -o relop.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rlocale.c -o rlocale.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c saveload.c -o saveload.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c scan.c -o scan.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c seq.c -o seq.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c serialize.c -o serialize.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sort.c -o sort.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c source.c -o source.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c split.c -o split.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sprintf.c -o sprintf.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c startup.c -o startup.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c subassign.c -o subassign.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c subscript.c -o subscript.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c subset.c -o subset.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c summary.c -o summary.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sysutils.c -o sysutils.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c times.c -o times.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c unique.c -o unique.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c util.c -o util.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c version.c -o version.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c g_alab_her.c -o g_alab_her.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c g_cntrlify.c -o g_cntrlify.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c g_fontdb.c -o g_fontdb.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c g_her_glyph.c -o g_her_glyph.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c xxxpr.f -o xxxpr.o
gcc -shared -fopenmp -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1    -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o`     -lflexiblas -lgfortran -lm   -lreadline  -ltre -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n   
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/main'
mkdir -p -- /builddir/build/BUILD/R-4.4.3/bin/exec
mkdir -p -- /builddir/build/BUILD/R-4.4.3/lib
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/main'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/main'
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c Rmain.c -o Rmain.o
gcc -Wl,--export-dynamic -fopenmp  -L"../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   -o R.bin Rmain.o  -lR 
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/main'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/main'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/main'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/internet'
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection      -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection      -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection      -fvisibility=hidden -c internet.c -o internet.o
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection      -fvisibility=hidden -c libcurl.c -o libcurl.o
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection      -fvisibility=hidden -c sock.c -o sock.o
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection      -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR  
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/internet'
mkdir -p -- /builddir/build/BUILD/R-4.4.3/modules
make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/internet'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/internet'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/internet'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/lapack'
making Lapack.d from Lapack.c
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/lapack'
gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c Lapack.c -o Lapack.o
gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c  ../../main/flexiblas.c -o flexiblas.o
gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   -o lapack.so  Lapack.o  flexiblas.o -lR  -lflexiblas -lgfortran -lm
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/lapack'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/lapack'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/lapack'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/lapack'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/X11'
gcc -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/webp -DWITH_GZFILEOP -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -DWITH_GZFILEOP -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c devX11.c -o devX11.o
gcc -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/webp -DWITH_GZFILEOP -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -DWITH_GZFILEOP -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rotated.c -o rotated.o
gcc -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/webp -DWITH_GZFILEOP -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -DWITH_GZFILEOP -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rbitmap.c -o rbitmap.o
gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext -lX11 -lXt -lXmu  -lR -lm 
gcc -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/webp -DWITH_GZFILEOP -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -DWITH_GZFILEOP -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dataentry.c -o dataentry.o
gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext -lX11 -lXt -lXmu  -lR -lm 
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/X11'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/X11'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/X11'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/X11'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library'
mkdir -p -- ../../library
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/profile'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/translations'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/translations'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/translations'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/base'
building package 'base'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/base'
mkdir -p -- ../../../library/base/demo
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/base'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/base'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/tools'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tools'
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making pdscan.d from pdscan.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c text.c -o text.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c Rmd5.c -o Rmd5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c md5.c -o md5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c signals.c -o signals.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c install.c -o install.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c getfmts.c -o getfmts.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c http.c -o http.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gramLatex.c -o gramLatex.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gramRd.c -o gramRd.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pdscan.c -o pdscan.o
gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/tools/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/tools/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/tools'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tools'
installing 'sysdata.rda'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/tools'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/tools'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/compiler'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/compiler'
byte-compiling package 'compiler'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/compiler'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/compiler'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/base'
byte-compiling package 'base'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/base'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tools'
byte-compiling package 'tools'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/tools'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/utils'
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
making hashtab.d from hashtab.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c io.c -o io.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c size.c -o size.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sock.c -o sock.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c utils.c -o utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c hashtab.c -o hashtab.o
gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/utils/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/utils/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/utils'
installing 'sysdata.rda'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/utils'
byte-compiling package 'utils'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/utils'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/utils'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/fonts/Roboto
mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static
mkdir -p -- ../../../library/grDevices/icc
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices'
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making clippath.d from clippath.c
making patterns.d from patterns.c
making mask.d from mask.c
making group.d from group.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c axis_scales.c -o axis_scales.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c chull.c -o chull.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c devices.c -o devices.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c colors.c -o colors.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c patterns.c -o patterns.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c group.c -o group.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c devCairo.c -o devCairo.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c devPicTeX.c -o devPicTeX.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c devPS.c -o devPS.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c devQuartz.c -o devQuartz.o
gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[7]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[8]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices/src/cairo'
make[9]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices/src/cairo'
gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -DWITH_GZFILEOP -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cairoBM.c -o cairoBM.o
gcc -shared -L"../../../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lcairo -lpng16 -L"../../../../../lib" -lR -lm 
make[9]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices/src/cairo'
make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices'
byte-compiling package 'grDevices'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grDevices'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics'
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c base.c -o base.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c graphics.c -o graphics.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c par.c -o par.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c plot.c -o plot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c plot3d.c -o plot3d.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c stem.c -o stem.o
gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics'
byte-compiling package 'graphics'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/graphics'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/stats'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/stats'
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c kmeans.c -o kmeans.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c ansari.c -o ansari.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c bandwidths.c -o bandwidths.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c chisqsim.c -o chisqsim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c d2x2xk.c -o d2x2xk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fexact.c -o fexact.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c kendall.c -o kendall.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c ks.c -o ks.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c line.c -o line.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c smooth.c -o smooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c prho.c -o prho.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c swilk.c -o swilk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c ksmooth.c -o ksmooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c loessc.c -o loessc.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c monoSpl.c -o monoSpl.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c isoreg.c -o isoreg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c Srunmed.c -o Srunmed.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dblcen.c -o dblcen.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c distance.c -o distance.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c hclust-utils.c -o hclust-utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c nls.c -o nls.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rWishart.c -o rWishart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c HoltWinters.c -o HoltWinters.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c PPsum.c -o PPsum.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c arima.c -o arima.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c burg.c -o burg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c filter.c -o filter.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mAR.c -o mAR.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pacf.c -o pacf.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c starma.c -o starma.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c port.c -o port.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c family.c -o family.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sbart.c -o sbart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c approx.c -o approx.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c loglin.c -o loglin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c lowess.c -o lowess.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c massdist.c -o massdist.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c splines.c -o splines.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c lm.c -o lm.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c complete_cases.c -o complete_cases.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cov.c -o cov.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c deriv.c -o deriv.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fft.c -o fft.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fourier.c -o fourier.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c model.c -o model.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c optim.c -o optim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c optimize.c -o optimize.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c integrate.c -o integrate.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c random.c -o random.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c distn.c -o distn.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c zeroin.c -o zeroin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rcont.c -o rcont.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c influence.c -o influence.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c bsplvd.f -o bsplvd.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c bvalue.f -o bvalue.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c bvalus.f -o bvalus.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c loessf.f -o loessf.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c ppr.f -o ppr.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c qsbart.f -o qsbart.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c sgram.f -o sgram.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c sinerp.f -o sinerp.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c sslvrg.f -o sslvrg.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c stxwx.f -o stxwx.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c hclust.f -o hclust.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c kmns.f -o kmns.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c eureka.f -o eureka.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c stl.f -o stl.o
gfortran -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c portsrc.f -o portsrc.o
portsrc.f: In function ‘i7do_’:
portsrc.f:6574:44: warning: ‘jcol’ may be used uninitialized [-Wmaybe-uninitialized]
 6574 |       INTEGER DEG,HEAD,IC,IP,IPL,IPU,IR,JCOL,JP,JPL,JPU,L,MAXINC,
      |                                            ^
portsrc.f: In function ‘dl7mst_’:
portsrc.f:5658:18: warning: ‘psifac’ may be used uninitialized [-Wmaybe-uninitialized]
 5658 |               IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310
      |                  ^
portsrc.f:5378:62: note: ‘psifac’ was declared here
 5378 |      1                 LK, OLDPHI, PHI, PHIMAX, PHIMIN, PSIFAC, RAD,
      |                                                              ^
portsrc.f:5521:51: warning: ‘alphak’ may be used uninitialized [-Wmaybe-uninitialized]
 5521 |       IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK)
      |                                                   ^
portsrc.f:5377:37: note: ‘alphak’ was declared here
 5377 |       DOUBLE PRECISION A, ADI, ALPHAK, B, DFACSQ, DST, DTOL, D1, D2,
      |                                     ^
portsrc.f: In function ‘dg7qts_’:
portsrc.f:10324:72: warning: ‘phi’ may be used uninitialized [-Wmaybe-uninitialized]
10324 |       LK = DMAX1(LK, PHI*W(PHIPIN))
      |                                                                        ^
portsrc.f:10077:34: note: ‘phi’ was declared here
10077 |      1                 OLDPHI, PHI, PHIMAX, PHIMIN, PSIFAC, RAD, RADSQ,
      |                                  ^
portsrc.f:10466:10: warning: ‘kamin’ may be used uninitialized [-Wmaybe-uninitialized]
10466 |       IF (KA .GE. KAMIN) GO TO 340
      |          ^
portsrc.f:10075:32: note: ‘kamin’ was declared here
10075 |      1        J, K, KALIM, KAMIN, K1, LK0, PHIPIN, Q, Q0, UK0, X
      |                                ^
portsrc.f:10329:55: warning: ‘alphak’ may be used uninitialized [-Wmaybe-uninitialized]
10329 |       IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK)
      |                                                       ^
portsrc.f:10076:29: note: ‘alphak’ was declared here
10076 |       DOUBLE PRECISION ALPHAK, AKI, AKK, DELTA, DST, EPS, GTSTA, LK,
      |                             ^
portsrc.f: In function ‘dd7dgb_’:
portsrc.f:12246:72: warning: ‘dnwtst’ may be used uninitialized [-Wmaybe-uninitialized]
12246 |       V(DST0) = DNWTST
      |                                                                        ^
portsrc.f:12105:29: note: ‘dnwtst’ was declared here
12105 |       DOUBLE PRECISION DNWTST, GHINVG, GNORM, GNORM0, NRED, PRED, RAD,
      |                             ^
portsrc.f:12243:72: warning: ‘nred’ may be used uninitialized [-Wmaybe-uninitialized]
12243 |       V(NREDUC) = NRED
      |                                                                        ^
portsrc.f:12105:58: note: ‘nred’ was declared here
12105 |       DOUBLE PRECISION DNWTST, GHINVG, GNORM, GNORM0, NRED, PRED, RAD,
      |                                                          ^
portsrc.f: In function ‘dg7qsb_’:
portsrc.f:2457:32: warning: ‘nred’ may be used uninitialized [-Wmaybe-uninitialized]
 2457 |       DOUBLE PRECISION DS0, NRED, PRED, RAD
      |                                ^
portsrc.f:2514:72: warning: ‘ds0’ may be used uninitialized [-Wmaybe-uninitialized]
 2514 |  60   V(DST0) = DS0
      |                                                                        ^
portsrc.f:2457:26: note: ‘ds0’ was declared here
 2457 |       DOUBLE PRECISION DS0, NRED, PRED, RAD
      |                          ^
portsrc.f: In function ‘dl7msb_’:
portsrc.f:8086:32: warning: ‘nred’ may be used uninitialized [-Wmaybe-uninitialized]
 8086 |       DOUBLE PRECISION DS0, NRED, PRED, RAD
      |                                ^
portsrc.f:8173:72: warning: ‘ds0’ may be used uninitialized [-Wmaybe-uninitialized]
 8173 |  90   V(DST0) = DS0
      |                                                                        ^
portsrc.f:8086:26: note: ‘ds0’ was declared here
 8086 |       DOUBLE PRECISION DS0, NRED, PRED, RAD
      |                          ^
portsrc.f: In function ‘df7hes_’:
portsrc.f:8652:72: warning: ‘hes’ may be used uninitialized [-Wmaybe-uninitialized]
 8652 |  210  IV(FDH) = HES
      |                                                                        ^
portsrc.f:8450:25: note: ‘hes’ was declared here
 8450 |       INTEGER GSAVE1, HES, HMI, HPI, HPM, I, K, KIND, L, M, MM1, MM1O2,
      |                         ^
portsrc.f: In function ‘dparck_’:
portsrc.f:3587:10: warning: ‘miv2’ may be used uninitialized [-Wmaybe-uninitialized]
 3587 |       IF (LIV .LT. MIV2) GO TO 300
      |          ^
portsrc.f:3520:54: note: ‘miv2’ was declared here
 3520 |       INTEGER ALG1, I, II, IV1, J, K, L, M, MIV1, MIV2, NDFALT, PARSV1,
      |                                                      ^
portsrc.f: In function ‘drn2gb_’:
portsrc.f:12079:72: warning: ‘g1’ may be used uninitialized [-Wmaybe-uninitialized]
12079 |  270  CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X)
      |                                                                        ^
portsrc.f:11822:16: note: ‘g1’ was declared here
11822 |       INTEGER G1, GI, I, IV1, IVMODE, JTOL1, L, LH, NN, QTR1,
      |                ^
portsrc.f: In function ‘drn2g_’:
portsrc.f:458:72: warning: ‘g1’ may be used uninitialized [-Wmaybe-uninitialized]
  458 |  300  CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X)
      |                                                                        ^
portsrc.f:157:16: note: ‘g1’ was declared here
  157 |       INTEGER G1, GI, I, IV1, IVMODE, JTOL1, K, L, LH, NN, QTR1,
      |                ^
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c lminfl.f -o lminfl.o
gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -lflexiblas -lgfortran -lm -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/stats/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/stats/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/stats'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/stats'
byte-compiling package 'stats'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/stats'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/stats'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/datasets'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/datasets'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/methods'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/methods'
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c do_substitute_direct.c -o do_substitute_direct.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c slot.c -o slot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c class_support.c -o class_support.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c tests.c -o tests.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c utils.c -o utils.o
gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/methods/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/methods/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/methods'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/methods'
byte-compiling package 'methods'
initializing class and method definitions ... done
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/methods'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/methods'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grid'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grid'
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grid/src'
making clippath.d from clippath.c
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making mask.d from mask.c
making matrix.d from matrix.c
making path.d from path.c
making register.d from register.c
making state.d from state.c
making typeset.d from typeset.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gpar.c -o gpar.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c grid.c -o grid.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c just.c -o just.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c layout.c -o layout.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c matrix.c -o matrix.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c path.c -o path.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c register.c -o register.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c state.c -o state.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c typeset.c -o typeset.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c unit.c -o unit.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c util.c -o util.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c viewport.c -o viewport.o
gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
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make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/grid'
byte-compiling package 'grid'
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make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/grid'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/splines'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/splines'
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/splines/src'
making splines.d from splines.c
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c splines.c -o splines.o
gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o splines.so splines.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/splines/src'
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make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/splines'
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/splines'
byte-compiling package 'splines'
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make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
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make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/stats4'
byte-compiling package 'stats4'
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make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
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make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c tcltk.c -o tcltk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c tcltk_unix.c -o tcltk_unix.o
gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.6 -L/usr/lib64 -ltk8.6 -lX11 -lm -L../../../../lib -lR
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/tcltk/src'
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make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/tcltk'
byte-compiling package 'tcltk'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/tcltk'
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make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
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make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/parallel'
make[5]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rngstream.c -o rngstream.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fork.c -o fork.o
gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/parallel/src'
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make[4]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/parallel'
byte-compiling package 'parallel'
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installing parsed NAMESPACE files
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you should 'make docs' now ...
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/doc'
creating doc/NEWS
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creating doc/manual/R-FAQ.html
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make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library'
installing parsed Rd
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library'
  base
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  datasets
  grid
  tools
  tcltk
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building/updating package metadata ...
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writing package indices
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building all R object docs
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    chol                                    html  
    chol2inv                                html  
    chooseOpsMethod                         html  
    class                                   html  
    col                                     html  
    colnames                                html  
    Colon                                   html  
    colSums                                 html  
    commandArgs                             html  
    comment                                 html  
    Comparison                              html  
    complex                                 html  
    conditions                              html  
    conflicts                               html  
    connections                             html  
    Constants                               html  
    contributors                            html  
    Control                                 html  
    copyright                               html  
    crossprod                               html  
    Cstack_info                             html  
    cumsum                                  html  
    curlGetHeaders                          html  
    cut.POSIXt                              html  
    cut                                     html  
    data.class                              html  
    data.frame                              html  
    data.matrix                             html  
    dataframeHelpers                        html  
    date                                    html  
    Dates                                   html  
    DateTimeClasses                         html  
    dcf                                     html  
    debug                                   html  
    declare                                 html  
    Defunct                                 html  
    delayedAssign                           html  
    deparse                                 html  
    deparseOpts                             html  
    Deprecated                              html  
    det                                     html  
    detach                                  html  
    dev                                     html  
    diag                                    html  
    diff                                    html  
    difftime                                html  
    dim                                     html  
    dimnames                                html  
    do.call                                 html  
    dontCheck                               html  
    dots                                    html  
    double                                  html  
    dput                                    html  
    drop                                    html  
    droplevels                              html  
    dump                                    html  
    duplicated                              html  
    dynload                                 html  
    eapply                                  html  
    eigen                                   html  
    encodeString                            html  
    Encoding                                html  
    environment                             html  
    EnvVar                                  html  
    eval                                    html  
    exists                                  html  
    expand.grid                             html  
    expression                              html  
    Extract.data.frame                      html  
    Extract.factor                          html  
    Extract                                 html  
    Extremes                                html  
    extSoftVersion                          html  
    factor                                  html  
    file.access                             html  
    file.choose                             html  
    file.info                               html  
    file.path                               html  
    file.show                               html  
    files                                   html  
    files2                                  html  
    find.package                            html  
    findInterval                            html  
    force                                   html  
    forceAndCall                            html  
    Foreign-internal                        html  
    Foreign                                 html  
    formals                                 html  
    format.info                             html  
    format.pval                             html  
    format                                  html  
    formatc                                 html  
    formatDL                                html  
    function                                html  
    funprog                                 html  
    gc                                      html  
    gc.time                                 html  
    gctorture                               html  
    get                                     html  
    getCallingDLL                           html  
    getDLLRegisteredRoutines                html  
    getLoadedDLLs                           html  
    getNativeSymbolInfo                     html  
    gettext                                 html  
    getwd                                   html  
    gl                                      html  
    grep                                    html  
    grepRaw                                 html  
    groupGeneric                            html  
    grouping                                html  
    gzcon                                   html  
    hexmode                                 html  
    Hyperbolic                              html  
    iconv                                   html  
    icuSetCollate                           html  
    identical                               html  
    identity                                html  
    ifelse                                  html  
    integer                                 html  
    interaction                             html  
    interactive                             html  
    Internal                                html  
    InternalMethods                         html  
    invisible                               html  
    is.finite                               html  
    is.function                             html  
    is.language                             html  
    is.object                               html  
    is.recursive                            html  
    is.single                               html  
    is.unsorted                             html  
    ISOdatetime                             html  
    isS4                                    html  
    isSymmetric                             html  
    jitter                                  html  
    kappa                                   html  
    kronecker                               html  
    l10n_info                               html  
    La_library                              html  
    La_version                              html  
    labels                                  html  
    lapply                                  html  
    Last.value                              html  
    lazyload                                html  
    length                                  html  
    lengths                                 html  
    levels                                  html  
    libcurlVersion                          html  
    libPaths                                html  
    library.dynam                           html  
    library                                 html  
    license                                 html  
    list.files                              html  
    list                                    html  
    list2DF                                 html  
    list2env                                html  
    load                                    html  
    locales                                 html  
    Log                                     html  
    Logic                                   html  
    logical                                 html  
    LongVectors                             html  
    lower.tri                               html  
    ls                                      html  
    make.names                              html  
    make.unique                             html  
    mapply                                  html  
    marginSums                              html  
    mat.or.vec                              html  
    match.arg                               html  
    match.call                              html  
    match.fun                               html  
    match                                   html  
    MathFun                                 html  
    matmult                                 html  
    matrix                                  html  
    maxCol                                  html  
    mean                                    html  
    memCompress                             html  
    memlimits                               html  
    Memory-limits                           html  
    memory.profile                          html  
    Memory                                  html  
    merge                                   html  
    message                                 html  
    missing                                 html  
    mode                                    html  
    mtfrm                                   html  
    NA                                      html  
    name                                    html  
    names                                   html  
    nargs                                   html  
    nchar                                   html  
    nlevels                                 html  
    noquote                                 html  
    norm                                    html  
    normalizePath                           html  
    notyet                                  html  
    nrow                                    html  
    ns-dblcolon                             html  
    ns-hooks                                html  
    ns-internal                             html  
    ns-load                                 html  
    ns-reflect                              html  
    ns-topenv                               html  
    NULL                                    html  
    numeric_version                         html  
    numeric                                 html  
    NumericConstants                        html  
    octmode                                 html  
    on.exit                                 html  
    Ops.Date                                html  
    options                                 html  
    order                                   html  
    outer                                   html  
    Paren                                   html  
    parse                                   html  
    paste                                   html  
    path.expand                             html  
    pcre_config                             html  
    pipeOp                                  html  
    Platform                                html  
    plot                                    html  
    pmatch                                  html  
    polyroot                                html  
    pos.to.env                              html  
    pretty                                  html  
    Primitive                               html  
    print.dataframe                         html  
    print.default                           html  
    print                                   html  
    prmatrix                                html  
    proc.time                               html  
    prod                                    html  
    proportions                             html  
    pushBack                                html  
    qr                                      html  
    qraux                                   html  
    quit                                    html  
    Quotes                                  html  
    Random-user                             html  
    Random                                  html  
    range                                   html  
    rank                                    html  
    rapply                                  html  
    raw                                     html  
    rawConnection                           html  
    rawConversion                           html  
    RdUtils                                 html  
    readBin                                 html  
    readChar                                html  
    readline                                html  
    readLines                               html  
    readRDS                                 html  
    readRenviron                            html  
    Recall                                  html  
    reg.finalizer                           html  
    regex                                   html  
    regmatches                              html  
    rep                                     html  
    replace                                 html  
    Reserved                                html  
    rev                                     html  
    Rhome                                   html  
    rle                                     html  
    rm                                      html  
    round.POSIXt                            html  
    Round                                   html  
    row.names                               html  
    row                                     html  
    rowsum                                  html  
    S3method                                html  
    sample                                  html  
    save                                    html  
    scale                                   html  
    scan                                    html  
    search                                  html  
    seek                                    html  
    seq.Date                                html  
    seq.POSIXt                              html  
    seq                                     html  
    sequence                                html  
    serialize                               html  
    sets                                    html  
    setTimeLimit                            html  
    showConnections                         html  
    shQuote                                 html  
    sign                                    html  
    sink                                    html  
    slice.index                             html  
    slotOp                                  html  
    socketSelect                            html  
    solve                                   html  
    sort_by                                 html  
    sort                                    html  
    source                                  html  
    Special                                 html  
    split                                   html  
    sprintf                                 html  
    sQuote                                  html  
    srcfile                                 html  
    StackOverflows                          html  
    standardGeneric                         html  
    startsWith                              html  
    Startup                                 html  
    stop                                    html  
    stopifnot                               html  
    strptime                                html  
    strrep                                  html  
    strsplit                                html  
    strtoi                                  html  
    strtrim                                 html  
    structure                               html  
    strwrap                                 html  
    subset                                  html  
    substitute                              html  
    substr                                  html  
    sum                                     html  
    summary                                 html  
    svd                                     html  
    sweep                                   html  
    switch                                  html  
    Syntax                                  html  
    Sys.getenv                              html  
    Sys.getpid                              html  
    Sys.glob                                html  
    Sys.info                                html  
    Sys.localeconv                          html  
    sys.parent                              html  
    Sys.readlink                            html  
    Sys.setenv                              html  
    Sys.setFileTime                         html  
    Sys.sleep                               html  
    sys.source                              html  
    Sys.time                                html  
    Sys.which                               html  
    system.file                             html  
    system                                  html  
    system.time                             html  
    system2                                 html  
    t                                       html  
    table                                   html  
    tabulate                                html  
    Tailcall                                html  
    tapply                                  html  
    taskCallback                            html  
    taskCallbackManager                     html  
    taskCallbackNames                       html  
    tempfile                                html  
    textconnections                         html  
    tilde                                   html  
    timezones                               html  
    toString                                html  
    trace                                   html  
    traceback                               html  
    tracemem                                html  
    transform                               html  
    Trig                                    html  
    trimws                                  html  
    try                                     html  
    typeof                                  html  
    unique                                  html  
    units                                   html  
    unlink                                  html  
    unlist                                  html  
    unname                                  html  
    use                                     html  
    UseMethod                               html  
    userhooks                               html  
    utf8Conversion                          html  
    UTF8filepaths                           html  
    validUTF8                               html  
    vector                                  html  
    Vectorize                               html  
    Version                                 html  
    warning                                 html  
    warnings                                html  
    weekday.POSIXt                          html  
    which.min                               html  
    which                                   html  
    with                                    html  
    withVisible                             html  
    write                                   html  
    writeLines                              html  
    xtfrm                                   html  
    zapsmall                                html  
    zMachine                                html  
    zpackages                               html  
    zScript                                 html  
    zutils                                  html  
    Signals                                 html  
  converting help for package 'tools'
    add_datalist                            html  
    assertCondition                         html  
    bibstyle                                html  
    buildVignette                           html  
    buildVignettes                          html  
    charsets                                html  
    check_packages_in_dir                   html  
    checkFF                                 html  
    checkMD5sums                            html  
    checkPoFiles                            html  
    checkRd                                 html  
    checkRdaFiles                           html  
    checkTnF                                html  
    checkVignettes                          html  
    codoc                                   html  
    compactPDF                              html  
    CRANtools                               html  
    delimMatch                              html  
    dependsOnPkgs                           html  
    encoded                                 html  
    fileutils                               html  
    find_gs_cmd                             html  
    getVignetteInfo                         html  
    HTMLheader                              html  
    HTMLlinks                               html  
    loadRdMacros                            html  
    make_translations_pkg                   html  
    makeLazyLoading                         html  
    makevars                                html  
    matchConcordance                        html  
    md5sum                                  html  
    package_dependencies                    html  
    package_native_routine_registration_skeleton
                                            html  
    parse_Rd                                html  
    parseLatex                              html  
    pkg2HTML                                html  
    print.via.format                        html  
    pskill                                  html  
    psnice                                  html  
    QC                                      html  
    Rcmd                                    html  
    Rd2HTML                                 html  
    Rd2txt_options                          html  
    Rdiff                                   html  
    Rdindex                                 html  
    RdTextFilter                            html  
    Rdutils                                 html  
    read.00Index                            html  
    showNonASCII                            html  
    startDynamicHelp                        html  
    SweaveTeXFilter                         html  
    testInstalledPackage                    html  
    texi2dvi                                html  
    toHTML                                  html  
    tools-defunct                           html  
    tools-deprecated                        html  
    tools-package                           html  
    toRd                                    html  
    toTitleCase                             html  
    undoc                                   html  
    update_pkg_po                           html  
    updatePACKAGES                          html  
    userdir                                 html  
    vignetteEngine                          html  
    vignetteInfo                            html  
    writePACKAGES                           html  
    xgettext                                html  
  converting help for package 'utils'
    adist                                   html  
    alarm                                   html  
    apropos                                 html  
    aregexec                                html  
    arrangeWindows                          html  
    askYesNo                                html  
    aspell-utils                            html  
    aspell                                  html  
    available.packages                      html  
    BATCH                                   html  
    bibentry                                html  
    browseEnv                               html  
    browseURL                               html  
    browseVignettes                         html  
    bug.report                              html  
    capture.output                          html  
    changedFiles                            html  
    charClass                               html  
    choose.dir                              html  
    choose.files                            html  
    chooseBioCmirror                        html  
    chooseCRANmirror                        html  
    citation                                html  
    cite                                    html  
    citEntry                                html  
    clipboard                               html  
    close.socket                            html  
    combn                                   html  
    compareVersion                          html  
    COMPILE                                 html  
    contrib.url                             html  
    count.fields                            html  
    create.post                             html  
    data                                    html  
    dataentry                               html  
    debugcall                               html  
    debugger                                html  
    demo                                    html  
    DLL.version                             html  
    download.file                           html  
    download.packages                       html  
    edit.data.frame                         html  
    edit                                    html  
    example                                 html  
    file.edit                               html  
    filetest                                html  
    findCRANmirror                          html  
    findLineNum                             html  
    fix                                     html  
    flush.console                           html  
    format                                  html  
    getAnywhere                             html  
    getFromNamespace                        html  
    getParseData                            html  
    getS3method                             html  
    getWindowsHandle                        html  
    getWindowsHandles                       html  
    glob2rx                                 html  
    globalVariables                         html  
    hashtab                                 html  
    hasName                                 html  
    head                                    html  
    help                                    html  
    help.request                            html  
    help.search                             html  
    help.start                              html  
    hsearch-utils                           html  
    install.packages                        html  
    INSTALL                                 html  
    installed.packages                      html  
    isS3method                              html  
    isS3stdGen                              html  
    LINK                                    html  
    localeToCharset                         html  
    ls_str                                  html  
    maintainer                              html  
    make.packages.html                      html  
    make.socket                             html  
    memory.size                             html  
    menu                                    html  
    methods                                 html  
    mirrorAdmin                             html  
    modifyList                              html  
    news                                    html  
    nsl                                     html  
    object.size                             html  
    package.skeleton                        html  
    packageDescription                      html  
    packageName                             html  
    packageStatus                           html  
    page                                    html  
    person                                  html  
    personList                              html  
    PkgUtils                                html  
    process.events                          html  
    prompt                                  html  
    promptData                              html  
    promptPackage                           html  
    Question                                html  
    rcompgen                                html  
    Rconsole                                html  
    read.DIF                                html  
    read.fortran                            html  
    read.fwf                                html  
    read.socket                             html  
    read.table                              html  
    readRegistry                            html  
    recover                                 html  
    relist                                  html  
    remove.packages                         html  
    REMOVE                                  html  
    removeSource                            html  
    RHOME                                   html  
    roman                                   html  
    Rprof                                   html  
    Rprofmem                                html  
    Rscript                                 html  
    RShowDoc                                html  
    RSiteSearch                             html  
    rtags                                   html  
    Rtangle                                 html  
    RweaveLatex                             html  
    savehistory                             html  
    select.list                             html  
    sessionInfo                             html  
    setRepositories                         html  
    setWindowTitle                          html  
    SHLIB                                   html  
    shortPathName                           html  
    sourceutils                             html  
    stack                                   html  
    str                                     html  
    strcapture                              html  
    summaryRprof                            html  
    Sweave                                  html  
    SweaveSyntConv                          html  
    SweaveUtils                             html  
    tar                                     html  
    toLatex                                 html  
    txtProgressBar                          html  
    type.convert                            html  
    untar                                   html  
    unzip                                   html  
    update.packages                         html  
    upgrade                                 html  
    url.show                                html  
    URLencode                               html  
    utils-defunct                           html  
    utils-deprecated                        html  
    utils-internal                          html  
    utils-package                           html  
    View                                    html  
    vignette                                html  
    warnErrList                             html  
    winDialog                               html  
    winextras                               html  
    winMenus                                html  
    winProgressBar                          html  
    write.table                             html  
    zip                                     html  
  converting help for package 'grDevices'
    adjustcolor                             html  
    as.graphicsAnnot                        html  
    as.raster                               html  
    axisTicks                               html  
    boxplot.stats                           html  
    bringToTop                              html  
    cairo                                   html  
    cairoSymbolFont                         html  
    check.options                           html  
    chull                                   html  
    cm                                      html  
    col2rgb                                 html  
    colorRamp                               html  
    colors                                  html  
    contourLines                            html  
    convertColor                            html  
    densCols                                html  
    dev.capabilities                        html  
    dev.capture                             html  
    dev.flush                               html  
    dev.interactive                         html  
    dev                                     html  
    dev.size                                html  
    dev2                                    html  
    dev2bitmap                              html  
    devAskNewPage                           html  
    Devices                                 html  
    embedFonts                              html  
    extendrange                             html  
    getGraphicsEvent                        html  
    glyphInfo                               html  
    gray.colors                             html  
    gray                                    html  
    grDevices-internal                      html  
    grDevices-package                       html  
    grSoftVersion                           html  
    hcl                                     html  
    Hershey                                 html  
    hsv                                     html  
    Japanese                                html  
    make.rgb                                html  
    msgWindow                               html  
    n2mfrow                                 html  
    nclass                                  html  
    palette                                 html  
    palettes                                html  
    pdf.options                             html  
    pdf                                     html  
    pictex                                  html  
    plotmath                                html  
    postscript                              html  
    postscriptFonts                         html  
    pretty.Date                             html  
    ps.options                              html  
    quartz                                  html  
    quartzFonts                             html  
    recordGraphics                          html  
    recordplot                              html  
    rgb                                     html  
    rgb2hsv                                 html  
    trans3d                                 html  
    Type1Font                               html  
    windows.options                         html  
    windows                                 html  
    windowsFonts                            html  
    x11                                     html  
    x11Fonts                                html  
    xfig                                    html  
    xy.coords                               html  
    xyTable                                 html  
    xyz.coords                              html  
    png                                     html  
    savePlot                                html  
  converting help for package 'graphics'
    abline                                  html  
    arrows                                  html  
    assocplot                               html  
    axis.POSIXct                            html  
    axis                                    html  
    axTicks                                 html  
    barplot                                 html  
    box                                     html  
    boxplot.matrix                          html  
    boxplot                                 html  
    bxp                                     html  
    cdplot                                  html  
    clip                                    html  
    contour                                 html  
    convertXY                               html  
    coplot                                  html  
    curve                                   html  
    dotchart                                html  
    filled.contour                          html  
    fourfoldplot                            html  
    frame                                   html  
    graphics-defunct                        html  
    graphics-package                        html  
    grid                                    html  
    hist.POSIXt                             html  
    hist                                    html  
    identify                                html  
    image                                   html  
    layout                                  html  
    legend                                  html  
    lines                                   html  
    locator                                 html  
    matplot                                 html  
    mosaicplot                              html  
    mtext                                   html  
    pairs                                   html  
    panel.smooth                            html  
    par                                     html  
    persp                                   html  
    pie                                     html  
    plot.dataframe                          html  
    plot.default                            html  
    plot.design                             html  
    plot.factor                             html  
    plot.formula                            html  
    plot.raster                             html  
    plot.table                              html  
    plot.window                             html  
    plot.xy                                 html  
    plothistogram                           html  
    points                                  html  
    polygon                                 html  
    polypath                                html  
    rasterImage                             html  
    rect                                    html  
    rug                                     html  
    screen                                  html  
    segments                                html  
    smoothScatter                           html  
    spineplot                               html  
    stars                                   html  
    stem                                    html  
    stripchart                              html  
    strwidth                                html  
    sunflowerplot                           html  
    symbols                                 html  
    text                                    html  
    title                                   html  
    units                                   html  
    xspline                                 html  
    zAxis                                   html  
  converting help for package 'stats'
    acf                                     html  
    acf2AR                                  html  
    add1                                    html  
    addmargins                              html  
    aggregate                               html  
    AIC                                     html  
    alias                                   html  
    anova.glm                               html  
    anova.lm                                html  
    anova.mlm                               html  
    anova                                   html  
    ansari.test                             html  
    aov                                     html  
    approxfun                               html  
    ar.ols                                  html  
    ar                                      html  
    arima                                   html  
    arima.sim                               html  
    arima0                                  html  
    ARMAacf                                 html  
    ARMAtoMA                                html  
    as.hclust                               html  
    asOneSidedFormula                       html  
    ave                                     html  
    bandwidth                               html  
    bartlett.test                           html  
    Beta                                    html  
    binom.test                              html  
    Binomial                                html  
    biplot.princomp                         html  
    biplot                                  html  
    birthday                                html  
    box.test                                html  
    cancor                                  html  
    case.names                              html  
    Cauchy                                  html  
    checkMFClasses                          html  
    chisq.test                              html  
    Chisquare                               html  
    cmdscale                                html  
    coef                                    html  
    complete.cases                          html  
    confint                                 html  
    constrOptim                             html  
    contrast                                html  
    contrasts                               html  
    convolve                                html  
    cophenetic                              html  
    cor                                     html  
    cor.test                                html  
    cov.wt                                  html  
    cpgram                                  html  
    cutree                                  html  
    decompose                               html  
    delete.response                         html  
    dendrapply                              html  
    dendrogram                              html  
    density                                 html  
    deriv                                   html  
    deviance                                html  
    df.residual                             html  
    diffinv                                 html  
    dist                                    html  
    Distributions                           html  
    dummy.coef                              html  
    ecdf                                    html  
    eff.aovlist                             html  
    effects                                 html  
    embed                                   html  
    expand.model.frame                      html  
    Exponential                             html  
    extractAIC                              html  
    factanal                                html  
    factor.scope                            html  
    family                                  html  
    Fdist                                   html  
    fft                                     html  
    filter                                  html  
    fisher.test                             html  
    fitted.values                           html  
    fivenum                                 html  
    fligner.test                            html  
    formula.nls                             html  
    formula                                 html  
    friedman.test                           html  
    ftable.formula                          html  
    ftable                                  html  
    GammaDist                               html  
    Geometric                               html  
    getInitial                              html  
    glm.control                             html  
    glm                                     html  
    glm.summaries                           html  
    hclust                                  html  
    heatmap                                 html  
    HoltWinters                             html  
    Hypergeometric                          html  
    identify.hclust                         html  
    influence.measures                      html  
    integrate                               html  
    interaction.plot                        html  
    IQR                                     html  
    is.empty                                html  
    isoreg                                  html  
    KalmanLike                              html  
    kernapply                               html  
    kernel                                  html  
    kmeans                                  html  
    kruskal.test                            html  
    ks.test                                 html  
    ksmooth                                 html  
    lag.plot                                html  
    lag                                     html  
    line                                    html  
    listof                                  html  
    lm.influence                            html  
    lm                                      html  
    lm.summaries                            html  
    lmfit                                   html  
    loadings                                html  
    loess.control                           html  
    loess                                   html  
    Logistic                                html  
    logLik                                  html  
    loglin                                  html  
    Lognormal                               html  
    lowess                                  html  
    ls.diag                                 html  
    ls.print                                html  
    lsfit                                   html  
    mad                                     html  
    mahalanobis                             html  
    make.link                               html  
    makepredictcall                         html  
    manova                                  html  
    mantelhaen.test                         html  
    mauchly.test                            html  
    mcnemar.test                            html  
    median                                  html  
    medpolish                               html  
    model.extract                           html  
    model.frame                             html  
    model.matrix                            html  
    model.tables                            html  
    monthplot                               html  
    mood.test                               html  
    Multinom                                html  
    na.action                               html  
    na.contiguous                           html  
    na.fail                                 html  
    nafns                                   html  
    naprint                                 html  
    NegBinomial                             html  
    nextn                                   html  
    nlm                                     html  
    nlminb                                  html  
    nls.control                             html  
    nls                                     html  
    NLSstAsymptotic                         html  
    NLSstClosestX                           html  
    NLSstLfAsymptote                        html  
    NLSstRtAsymptote                        html  
    nobs                                    html  
    Normal                                  html  
    numericDeriv                            html  
    offset                                  html  
    oneway.test                             html  
    optim                                   html  
    optimize                                html  
    order.dendrogram                        html  
    p.adjust                                html  
    Pair                                    html  
    pairwise.prop.test                      html  
    pairwise.t.test                         html  
    pairwise.table                          html  
    pairwise.wilcox.test                    html  
    plot.acf                                html  
    plot.density                            html  
    plot.HoltWinters                        html  
    plot.isoreg                             html  
    plot.lm                                 html  
    plot.ppr                                html  
    plot.profile.nls                        html  
    plot.profile                            html  
    plot.spec                               html  
    plot.stepfun                            html  
    plot.ts                                 html  
    Poisson                                 html  
    poisson.test                            html  
    poly                                    html  
    power.anova.test                        html  
    power.prop.test                         html  
    power                                   html  
    power.t.test                            html  
    pp.test                                 html  
    ppoints                                 html  
    ppr                                     html  
    prcomp                                  html  
    predict.arima                           html  
    predict.glm                             html  
    predict.HoltWinters                     html  
    predict.lm                              html  
    predict.loess                           html  
    predict.nls                             html  
    predict                                 html  
    predict.smooth.spline                   html  
    preplot                                 html  
    princomp                                html  
    print.power.htest                       html  
    print.ts                                html  
    printCoefmat                            html  
    profile.glm                             html  
    profile.nls                             html  
    profile                                 html  
    proj                                    html  
    prop.test                               html  
    prop.trend.test                         html  
    qqnorm                                  html  
    quade.test                              html  
    quantile                                html  
    r2dtable                                html  
    read.ftable                             html  
    rect.hclust                             html  
    relevel                                 html  
    reorder.dendrogram                      html  
    reorder.factor                          html  
    replications                            html  
    reshape                                 html  
    residuals                               html  
    runmed                                  html  
    rWishart                                html  
    scatter.smooth                          html  
    screeplot                               html  
    sd                                      html  
    se.contrast                             html  
    selfStart                               html  
    setNames                                html  
    shapiro.test                            html  
    sigma                                   html  
    SignRank                                html  
    simulate                                html  
    Smirnov                                 html  
    smooth                                  html  
    smooth.spline                           html  
    smoothEnds                              html  
    sortedXyData                            html  
    spec.ar                                 html  
    spec.pgram                              html  
    spec.taper                              html  
    spectrum                                html  
    splinefun                               html  
    SSasymp                                 html  
    SSasympOff                              html  
    SSasympOrig                             html  
    SSbiexp                                 html  
    SSD                                     html  
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    SSgompertz                              html  
    SSlogis                                 html  
    SSmicmen                                html  
    SSweibull                               html  
    start                                   html  
    stat.anova                              html  
    stats-defunct                           html  
    stats-deprecated                        html  
    stats-package                           html  
    step                                    html  
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    stl                                     html  
    stlmethods                              html  
    StructTS                                html  
    summary.aov                             html  
    summary.glm                             html  
    summary.lm                              html  
    summary.manova                          html  
    summary.nls                             html  
    summary.princomp                        html  
    supsmu                                  html  
    symnum                                  html  
    t.test                                  html  
    TDist                                   html  
    termplot                                html  
    terms.formula                           html  
    terms.object                            html  
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    time                                    html  
    toeplitz                                html  
    ts-methods                              html  
    ts.plot                                 html  
    ts                                      html  
    ts.union                                html  
    tsdiag                                  html  
    tsp                                     html  
    tsSmooth                                html  
    Tukey                                   html  
    TukeyHSD                                html  
    Uniform                                 html  
    uniroot                                 html  
    update.formula                          html  
    update                                  html  
    var.test                                html  
    varimax                                 html  
    vcov                                    html  
    Weibull                                 html  
    weighted.mean                           html  
    weighted.residuals                      html  
    weights                                 html  
    wilcox.test                             html  
    Wilcoxon                                html  
    window                                  html  
    xtabs                                   html  
    zC                                      html  
  converting help for package 'datasets'
    ability.cov                             html  
    airmiles                                html  
    AirPassengers                           html  
    airquality                              html  
    anscombe                                html  
    attenu                                  html  
    attitude                                html  
    austres                                 html  
    beavers                                 html  
    BJsales                                 html  
    BOD                                     html  
    cars                                    html  
    ChickWeight                             html  
    chickwts                                html  
    co2                                     html  
    crimtab                                 html  
    datasets-package                        html  
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    DNase                                   html  
    esoph                                   html  
    euro                                    html  
    eurodist                                html  
    EuStockMarkets                          html  
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    Formaldehyde                            html  
    freeny                                  html  
    HairEyeColor                            html  
    Harman23.cor                            html  
    Harman74.cor                            html  
    Indometh                                html  
    infert                                  html  
    InsectSprays                            html  
    iris                                    html  
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    JohnsonJohnson                          html  
    LakeHuron                               html  
    lh                                      html  
    LifeCycleSavings                        html  
    Loblolly                                html  
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    lynx                                    html  
    morley                                  html  
    mtcars                                  html  
    nhtemp                                  html  
    Nile                                    html  
    nottem                                  html  
    npk                                     html  
    occupationalStatus                      html  
    Orange                                  html  
    OrchardSprays                           html  
    PlantGrowth                             html  
    precip                                  html  
    presidents                              html  
    pressure                                html  
    Puromycin                               html  
    quakes                                  html  
    randu                                   html  
    rivers                                  html  
    rock                                    html  
    sleep                                   html  
    stackloss                               html  
    state                                   html  
    sunspot.month                           html  
    sunspot.year                            html  
    sunspots                                html  
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    Titanic                                 html  
    ToothGrowth                             html  
    treering                                html  
    trees                                   html  
    UCBAdmissions                           html  
    UKDriverDeaths                          html  
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    UKLungDeaths                            html  
    USAccDeaths                             html  
    USArrests                               html  
    USJudgeRatings                          html  
    USPersonalExpenditure                   html  
    uspop                                   html  
    VADeaths                                html  
    volcano                                 html  
    warpbreaks                              html  
    women                                   html  
    WorldPhones                             html  
    WWWusage                                html  
    zCO2                                    html  
  converting help for package 'methods'
    as                                      html  
    BasicClasses                            html  
    callGeneric                             html  
    canCoerce                               html  
    cbind2                                  html  
    Classes_Details                         html  
    Classes                                 html  
    classesToAM                             html  
    className                               html  
    classRepresentation-class               html  
    Documentation                           html  
    dotsMethods                             html  
    EmptyMethodsList-class                  html  
    EnvironmentClass                        html  
    evalSource                              html  
    findClass                               html  
    findMethods                             html  
    fixPrevious                             html  
    genericFunction-class                   html  
    GenericFunctions                        html  
    getClass                                html  
    getMethod                               html  
    getPackageName                          html  
    hasArg                                  html  
    implicitGeneric                         html  
    inheritedSlotNames                      html  
    initialize-methods                      html  
    Introduction                            html  
    is                                      html  
    isSealedMethod                          html  
    LanguageClasses                         html  
    languageEl                              html  
    LinearMethodsList-class                 html  
    localRefClass                           html  
    method.skeleton                         html  
    MethodDefinition-class                  html  
    Methods_Details                         html  
    Methods_for_Nongenerics                 html  
    Methods_for_S3                          html  
    methods-defunct                         html  
    methods-deprecated                      html  
    methods-package                         html  
    Methods                                 html  
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    MethodSupport                           html  
    methodUtilities                         html  
    MethodWithNext-class                    html  
    new                                     html  
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    nonStructure-class                      html  
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    promptClass                             html  
    promptMethods                           html  
    RClassUtils                             html  
    refClass                                html  
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    representation                          html  
    RMethodUtils                            html  
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    SClassExtension-class                   html  
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    setAs                                   html  
    setClass                                html  
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    setGeneric                              html  
    setGroupGeneric                         html  
    setIs                                   html  
    setLoadActions                          html  
    setMethod                               html  
    setOldClass                             html  
    setSClass                               html  
    show                                    html  
    showMethods                             html  
    signature-class                         html  
    slot                                    html  
    stdRefClass                             html  
    StructureClasses                        html  
    substituteDirect                        html  
    testInheritedMethods                    html  
    TraceClasses                            html  
    validObject                             html  
    zBasicFunsList                          html  
  converting help for package 'grid'
    absolute.size                           html  
    arrow                                   html  
    as.mask                                 html  
    calcStringMetric                        html  
    current.viewport                        html  
    dataViewport                            html  
    depth                                   html  
    deviceLoc                               html  
    drawDetails                             html  
    editDetails                             html  
    editViewport                            html  
    explode                                 html  
    gEdit                                   html  
    getNames                                html  
    gpar                                    html  
    gPath                                   html  
    grid-defunct                            html  
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    grid-package                            html  
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    grid.clip                               html  
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    grid.curve                              html  
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    grid.display.list                       html  
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    grid.frame                              html  
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    grid.group                              html  
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    grid.locator                            html  
    grid.ls                                 html  
    grid.move.to                            html  
    grid.newpage                            html  
    grid.null                               html  
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    grid.place                              html  
    grid.plot.and.legend                    html  
    grid.points                             html  
    grid.polygon                            html  
    grid.pretty                             html  
    grid.raster                             html  
    Grid                                    html  
    grid.record                             html  
    grid.rect                               html  
    grid.refresh                            html  
    grid.remove                             html  
    grid.reorder                            html  
    grid.roundrect                          html  
    grid.segments                           html  
    grid.set                                html  
    grid.show.layout                        html  
    grid.show.viewport                      html  
    grid.stroke                             html  
    grid.text                               html  
    grid.xaxis                              html  
    grid.xspline                            html  
    grid.yaxis                              html  
    gridCoords                              html  
    grobCoords                              html  
    grobName                                html  
    grobWidth                               html  
    grobX                                   html  
    legendGrob                              html  
    makeContent                             html  
    patterns                                html  
    plotViewport                            html  
    resolveRasterSize                       html  
    showGrob                                html  
    showViewport                            html  
    stringWidth                             html  
    unit.c                                  html  
    unit.length                             html  
    unit.pmin                               html  
    unit                                    html  
    unit.rep                                html  
    unitType                                html  
    valid.just                              html  
    validDetails                            html  
    viewport                                html  
    viewports                               html  
    viewportTransform                       html  
    vpPath                                  html  
    widthDetails                            html  
    xDetails                                html  
    xsplinePoints                           html  
  converting help for package 'splines'
    asVector                                html  
    backSpline                              html  
    bs                                      html  
    interpSpline                            html  
    ns                                      html  
    periodicSpline                          html  
    polySpline                              html  
    predict.bs                              html  
    predict.bSpline                         html  
    splineDesign                            html  
    splineKnots                             html  
    splineOrder                             html  
    splines-package                         html  
    xyVector                                html  
  converting help for package 'stats4'
    coef-methods                            html  
    confint-methods                         html  
    logLik-methods                          html  
    mle-class                               html  
    mle                                     html  
    plot-methods                            html  
    profile-methods                         html  
    profile.mle-class                       html  
    show-methods                            html  
    stats4-package                          html  
    summary-methods                         html  
    summary.mle-class                       html  
    update-methods                          html  
    vcov-methods                            html  
  converting help for package 'tcltk'
    TclInterface                            html  
    tclServiceMode                          html  
    tcltk-defunct                           html  
    tcltk-package                           html  
    tk_choose.dir                           html  
    tk_choose.files                         html  
    tk_messageBox                           html  
    tk_select.list                          html  
    TkCommands                              html  
    tkpager                                 html  
    tkProgressBar                           html  
    tkStartGUI                              html  
    TkWidgetcmds                            html  
    TkWidgets                               html  
  converting help for package 'compiler'
    compile                                 html  
  converting help for package 'parallel'
    clusterApply                            html  
    detectCores                             html  
    makeCluster                             html  
    parallel-package                        html  
    RngStream                               html  
    splitIndices                            html  
    children                                html  
    mcaffinity                              html  
    mcfork                                  html  
    mclapply                                html  
    mcparallel                              html  
    pvec                                    html  
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/Recommended'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library/Recommended'
begin installing recommended package MASS
* installing *source* package ‘MASS’ ...
** package ‘MASS’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/Rtmpi8UU9C/R.INSTALL465537c5f724/MASS/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c MASS.c -o MASS.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c lqs.c -o lqs.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/Rtmpi8UU9C/R.INSTALL465537c5f724/MASS/src'
installing to /builddir/build/BUILD/R-4.4.3/library/MASS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘MASS’
    finding HTML links ... done
    Aids2                                   html  
    Animals                                 html  
    Boston                                  html  
    Cars93                                  html  
    Cushings                                html  
    DDT                                     html  
    GAGurine                                html  
    Insurance                               html  
    MASS-internal                           html  
    Melanoma                                html  
    Null                                    html  
    OME                                     html  
    Pima.tr                                 html  
    Rabbit                                  html  
    Rubber                                  html  
    SP500                                   html  
    Sitka                                   html  
    Sitka89                                 html  
    Skye                                    html  
    Traffic                                 html  
    UScereal                                html  
    UScrime                                 html  
    VA                                      html  
    abbey                                   html  
    accdeaths                               html  
    addterm                                 html  
    anorexia                                html  
    anova.negbin                            html  
    area                                    html  
    bacteria                                html  
    bandwidth.nrd                           html  
    bcv                                     html  
    beav1                                   html  
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    biopsy                                  html  
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    caith                                   html  
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    cement                                  html  
    chem                                    html  
    con2tr                                  html  
    confint                                 html  
    contr.sdif                              html  
    coop                                    html  
    corresp                                 html  
    cov.rob                                 html  
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    cpus                                    html  
    crabs                                   html  
    deaths                                  html  
    denumerate                              html  
    dose.p                                  html  
    drivers                                 html  
    dropterm                                html  
    eagles                                  html  
    epil                                    html  
    eqscplot                                html  
    farms                                   html  
    fgl                                     html  
    fitdistr                                html  
    forbes                                  html  
    fractions                               html  
    galaxies                                html  
    gamma.dispersion                        html  
    gamma.shape.glm                         html  
    gehan                                   html  
    genotype                                html  
    geyser                                  html  
    gilgais                                 html  
    ginv                                    html  
    glm.convert                             html  
    glm.nb                                  html  
    glmmPQL                                 html  
    hills                                   html  
    hist.scott                              html  
    housing                                 html  
    huber                                   html  
    hubers                                  html  
    immer                                   html  
    isoMDS                                  html  
    kde2d                                   html  
    lda                                     html  
    ldahist                                 html  
    leuk                                    html  
    lm.gls                                  html  
    lm.ridge                                html  
    loglm                                   html  
    loglm1                                  html  
    logtrans                                html  
    lqs                                     html  
    mammals                                 html  
    mca                                     html  
    mcycle                                  html  
    menarche                                html  
    michelson                               html  
    minn38                                  html  
    motors                                  html  
    muscle                                  html  
    mvrnorm                                 html  
    negative.binomial                       html  
    newcomb                                 html  
    nlschools                               html  
    npk                                     html  
    npr1                                    html  
    oats                                    html  
    painters                                html  
    pairs.lda                               html  
    parcoord                                html  
    petrol                                  html  
    phones                                  html  
    plot.lda                                html  
    plot.mca                                html  
    polr                                    html  
    predict.glmmPQL                         html  
    predict.lda                             html  
    predict.lqs                             html  
    predict.mca                             html  
    predict.qda                             html  
    profile.glm                             html  
    qda                                     html  
    quine                                   html  
    rational                                html  
    renumerate                              html  
    rlm                                     html  
    rms.curv                                html  
    rnegbin                                 html  
    road                                    html  
    rotifer                                 html  
    sammon                                  html  
    ships                                   html  
    shoes                                   html  
    shrimp                                  html  
    shuttle                                 html  
    snails                                  html  
    stdres                                  html  
    steam                                   html  
    stepAIC                                 html  
    stormer                                 html  
    studres                                 html  
    summary.loglm                           html  
    summary.negbin                          html  
    summary.rlm                             html  
    survey                                  html  
    synth.tr                                html  
    theta.md                                html  
    topo                                    html  
    truehist                                html  
    ucv                                     html  
    waders                                  html  
    whiteside                               html  
    width.SJ                                html  
    write.matrix                            html  
    wtloss                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (MASS)
Making 'packages.html' ... done
begin installing recommended package lattice
* installing *source* package ‘lattice’ ...
** package ‘lattice’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/Rtmpi36E5z/R.INSTALL46a763e0dc7f/lattice/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c threeDplot.c -o threeDplot.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/Rtmpi36E5z/R.INSTALL46a763e0dc7f/lattice/src'
installing to /builddir/build/BUILD/R-4.4.3/library/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘lattice’
    finding HTML links ... done
    Lattice                                 html  
    Rows                                    html  
    USMortality                             html  
    axis.default                            html  
    banking                                 html  
    barchart.table                          html  
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    lattice.options                         html  
    latticeParseFormula                     html  
    level.colors                            html  
    levelplot                               html  
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    packet.panel.default                    html  
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    panel.barchart                          html  
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    panel.densityplot                       html  
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    panel.functions                         html  
    panel.histogram                         html  
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    panel.parallel                          html  
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    panel.smoothScatter                     html  
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    panel.stripplot                         html  
    panel.superpose                         html  
    panel.violin                            html  
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    prepanel.functions                      html  
    print.trellis                           html  
    qq                                      html  
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    simpleKey                               html  
    simpleTheme                             html  
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    strip.default                           html  
    tmd                                     html  
    trellis.device                          html  
    trellis.object                          html  
    trellis.par.get                         html  
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    utilities.3d                            html  
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    xyplot.ts                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lattice)
Making 'packages.html' ... done
begin installing recommended package Matrix
* installing *source* package ‘Matrix’ ...
** package ‘Matrix’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c Csparse.c -o Csparse.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c attrib.c -o attrib.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c bind.c -o bind.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cholmod-common.c -o cholmod-common.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cholmod-etc.c -o cholmod-etc.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coerce.c -o coerce.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cs-etc.c -o cs-etc.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dense.c -o dense.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c determinant.c -o determinant.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c expm.c -o expm.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c factor.c -o factor.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c idz.c -o idz.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c kappa.c -o kappa.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c matmult.c -o matmult.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c objects.c -o objects.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c perm.c -o perm.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c solve.c -o solve.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sparse.c -o sparse.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c subassign.c -o subassign.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c subscript.c -o subscript.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c utils-R.c -o utils-R.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c utils.c -o utils.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c validity.c -o validity.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c vector.c -o vector.o
cd SuiteSparse/CHOLMOD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.3/include\" -I\"/builddir/build/BUILD/R-4.4.3/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/CHOLMOD'
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Check/cholmod_check.c -o Check/cholmod_check.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Check/cholmod_l_check.c -o Check/cholmod_l_check.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Check/cholmod_read.c -o Check/cholmod_read.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Check/cholmod_l_read.c -o Check/cholmod_l_read.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Check/cholmod_write.c -o Check/cholmod_write.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Check/cholmod_l_write.c -o Check/cholmod_l_write.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_amd.c -o Cholesky/cholmod_amd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_amd.c -o Cholesky/cholmod_l_amd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_analyze.c -o Cholesky/cholmod_analyze.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_analyze.c -o Cholesky/cholmod_l_analyze.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_colamd.c -o Cholesky/cholmod_colamd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_colamd.c -o Cholesky/cholmod_l_colamd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_etree.c -o Cholesky/cholmod_etree.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_etree.c -o Cholesky/cholmod_l_etree.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_factorize.c -o Cholesky/cholmod_factorize.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_factorize.c -o Cholesky/cholmod_l_factorize.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_postorder.c -o Cholesky/cholmod_postorder.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_postorder.c -o Cholesky/cholmod_l_postorder.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_rcond.c -o Cholesky/cholmod_rcond.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_rcond.c -o Cholesky/cholmod_l_rcond.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_resymbol.c -o Cholesky/cholmod_resymbol.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_resymbol.c -o Cholesky/cholmod_l_resymbol.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_rowcolcounts.c -o Cholesky/cholmod_rowcolcounts.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_rowcolcounts.c -o Cholesky/cholmod_l_rowcolcounts.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_rowfac.c -o Cholesky/cholmod_rowfac.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_rowfac.c -o Cholesky/cholmod_l_rowfac.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_solve.c -o Cholesky/cholmod_solve.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_solve.c -o Cholesky/cholmod_l_solve.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_spsolve.c -o Cholesky/cholmod_spsolve.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_spsolve.c -o Cholesky/cholmod_l_spsolve.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_aat.c -o Utility/cholmod_aat.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_aat.c -o Utility/cholmod_l_aat.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_add.c -o Utility/cholmod_add.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_add.c -o Utility/cholmod_l_add.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_add_size_t.c -o Utility/cholmod_add_size_t.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_add_size_t.c -o Utility/cholmod_l_add_size_t.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_alloc_factor.c -o Utility/cholmod_alloc_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_alloc_factor.c -o Utility/cholmod_l_alloc_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_alloc_work.c -o Utility/cholmod_alloc_work.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_alloc_work.c -o Utility/cholmod_l_alloc_work.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_allocate_dense.c -o Utility/cholmod_allocate_dense.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_allocate_dense.c -o Utility/cholmod_l_allocate_dense.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_allocate_factor.c -o Utility/cholmod_allocate_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_allocate_factor.c -o Utility/cholmod_l_allocate_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_allocate_sparse.c -o Utility/cholmod_allocate_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_allocate_sparse.c -o Utility/cholmod_l_allocate_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_allocate_triplet.c -o Utility/cholmod_allocate_triplet.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_allocate_triplet.c -o Utility/cholmod_l_allocate_triplet.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_allocate_work.c -o Utility/cholmod_allocate_work.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_allocate_work.c -o Utility/cholmod_l_allocate_work.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_band.c -o Utility/cholmod_band.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_band.c -o Utility/cholmod_l_band.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_band_nnz.c -o Utility/cholmod_band_nnz.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_band_nnz.c -o Utility/cholmod_l_band_nnz.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_calloc.c -o Utility/cholmod_calloc.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_calloc.c -o Utility/cholmod_l_calloc.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_change_factor.c -o Utility/cholmod_change_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_change_factor.c -o Utility/cholmod_l_change_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_clear_flag.c -o Utility/cholmod_clear_flag.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_clear_flag.c -o Utility/cholmod_l_clear_flag.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_copy.c -o Utility/cholmod_copy.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy.c -o Utility/cholmod_l_copy.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_copy_dense.c -o Utility/cholmod_copy_dense.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy_dense.c -o Utility/cholmod_l_copy_dense.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_copy_dense2.c -o Utility/cholmod_copy_dense2.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy_dense2.c -o Utility/cholmod_l_copy_dense2.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_copy_factor.c -o Utility/cholmod_copy_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy_factor.c -o Utility/cholmod_l_copy_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_copy_sparse.c -o Utility/cholmod_copy_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy_sparse.c -o Utility/cholmod_l_copy_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_copy_triplet.c -o Utility/cholmod_copy_triplet.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy_triplet.c -o Utility/cholmod_l_copy_triplet.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_cumsum.c -o Utility/cholmod_cumsum.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_cumsum.c -o Utility/cholmod_l_cumsum.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_dbound.c -o Utility/cholmod_dbound.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_dbound.c -o Utility/cholmod_l_dbound.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_defaults.c -o Utility/cholmod_defaults.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_defaults.c -o Utility/cholmod_l_defaults.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_dense_nnz.c -o Utility/cholmod_dense_nnz.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_dense_nnz.c -o Utility/cholmod_l_dense_nnz.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_dense_to_sparse.c -o Utility/cholmod_dense_to_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_dense_to_sparse.c -o Utility/cholmod_l_dense_to_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_divcomplex.c -o Utility/cholmod_divcomplex.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_divcomplex.c -o Utility/cholmod_l_divcomplex.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_ensure_dense.c -o Utility/cholmod_ensure_dense.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_ensure_dense.c -o Utility/cholmod_l_ensure_dense.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_error.c -o Utility/cholmod_error.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_error.c -o Utility/cholmod_l_error.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_eye.c -o Utility/cholmod_eye.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_eye.c -o Utility/cholmod_l_eye.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_factor_to_sparse.c -o Utility/cholmod_factor_to_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_factor_to_sparse.c -o Utility/cholmod_l_factor_to_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_finish.c -o Utility/cholmod_finish.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_finish.c -o Utility/cholmod_l_finish.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_free.c -o Utility/cholmod_free.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_free.c -o Utility/cholmod_l_free.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_free_dense.c -o Utility/cholmod_free_dense.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_free_dense.c -o Utility/cholmod_l_free_dense.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_free_factor.c -o Utility/cholmod_free_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_free_factor.c -o Utility/cholmod_l_free_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_free_sparse.c -o Utility/cholmod_free_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_free_sparse.c -o Utility/cholmod_l_free_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_free_triplet.c -o Utility/cholmod_free_triplet.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_free_triplet.c -o Utility/cholmod_l_free_triplet.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_free_work.c -o Utility/cholmod_free_work.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_free_work.c -o Utility/cholmod_l_free_work.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_hypot.c -o Utility/cholmod_hypot.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_hypot.c -o Utility/cholmod_l_hypot.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_malloc.c -o Utility/cholmod_malloc.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_malloc.c -o Utility/cholmod_l_malloc.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_maxrank.c -o Utility/cholmod_maxrank.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_maxrank.c -o Utility/cholmod_l_maxrank.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_memdebug.c -o Utility/cholmod_memdebug.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_mult_size_t.c -o Utility/cholmod_mult_size_t.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_mult_size_t.c -o Utility/cholmod_l_mult_size_t.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_mult_uint64_t.c -o Utility/cholmod_mult_uint64_t.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_nnz.c -o Utility/cholmod_nnz.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_nnz.c -o Utility/cholmod_l_nnz.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_ones.c -o Utility/cholmod_ones.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_ones.c -o Utility/cholmod_l_ones.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_pack_factor.c -o Utility/cholmod_pack_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_pack_factor.c -o Utility/cholmod_l_pack_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_ptranspose.c -o Utility/cholmod_ptranspose.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_ptranspose.c -o Utility/cholmod_l_ptranspose.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_realloc.c -o Utility/cholmod_realloc.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_realloc.c -o Utility/cholmod_l_realloc.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_realloc_multiple.c -o Utility/cholmod_realloc_multiple.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_realloc_multiple.c -o Utility/cholmod_l_realloc_multiple.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_reallocate_column.c -o Utility/cholmod_reallocate_column.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_reallocate_column.c -o Utility/cholmod_l_reallocate_column.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_reallocate_factor.c -o Utility/cholmod_reallocate_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_reallocate_factor.c -o Utility/cholmod_l_reallocate_factor.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_reallocate_sparse.c -o Utility/cholmod_reallocate_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_reallocate_sparse.c -o Utility/cholmod_l_reallocate_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_reallocate_triplet.c -o Utility/cholmod_reallocate_triplet.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_reallocate_triplet.c -o Utility/cholmod_l_reallocate_triplet.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_sbound.c -o Utility/cholmod_sbound.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_sbound.c -o Utility/cholmod_l_sbound.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_score_comp.c -o Utility/cholmod_score_comp.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_score_comp.c -o Utility/cholmod_l_score_comp.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_set_empty.c -o Utility/cholmod_set_empty.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_set_empty.c -o Utility/cholmod_l_set_empty.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_sort.c -o Utility/cholmod_sort.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_sort.c -o Utility/cholmod_l_sort.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_sparse_to_dense.c -o Utility/cholmod_sparse_to_dense.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_sparse_to_dense.c -o Utility/cholmod_l_sparse_to_dense.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_sparse_to_triplet.c -o Utility/cholmod_sparse_to_triplet.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_sparse_to_triplet.c -o Utility/cholmod_l_sparse_to_triplet.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_speye.c -o Utility/cholmod_speye.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_speye.c -o Utility/cholmod_l_speye.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_spzeros.c -o Utility/cholmod_spzeros.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_spzeros.c -o Utility/cholmod_l_spzeros.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_start.c -o Utility/cholmod_start.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_start.c -o Utility/cholmod_l_start.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_transpose.c -o Utility/cholmod_transpose.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_transpose.c -o Utility/cholmod_l_transpose.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_transpose_sym.c -o Utility/cholmod_transpose_sym.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_transpose_sym.c -o Utility/cholmod_l_transpose_sym.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_transpose_unsym.c -o Utility/cholmod_transpose_unsym.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_transpose_unsym.c -o Utility/cholmod_l_transpose_unsym.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_triplet_to_sparse.c -o Utility/cholmod_triplet_to_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_triplet_to_sparse.c -o Utility/cholmod_l_triplet_to_sparse.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_version.c -o Utility/cholmod_version.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_version.c -o Utility/cholmod_l_version.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_xtype.c -o Utility/cholmod_xtype.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_xtype.c -o Utility/cholmod_l_xtype.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_zeros.c -o Utility/cholmod_zeros.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Utility/cholmod_l_zeros.c -o Utility/cholmod_l_zeros.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_drop.c -o MatrixOps/cholmod_drop.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_drop.c -o MatrixOps/cholmod_l_drop.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_horzcat.c -o MatrixOps/cholmod_horzcat.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_horzcat.c -o MatrixOps/cholmod_l_horzcat.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_norm.c -o MatrixOps/cholmod_norm.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_norm.c -o MatrixOps/cholmod_l_norm.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_scale.c -o MatrixOps/cholmod_scale.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_scale.c -o MatrixOps/cholmod_l_scale.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_sdmult.c -o MatrixOps/cholmod_sdmult.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_sdmult.c -o MatrixOps/cholmod_l_sdmult.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_ssmult.c -o MatrixOps/cholmod_ssmult.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_ssmult.c -o MatrixOps/cholmod_l_ssmult.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_submatrix.c -o MatrixOps/cholmod_submatrix.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_submatrix.c -o MatrixOps/cholmod_l_submatrix.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_symmetry.c -o MatrixOps/cholmod_symmetry.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_symmetry.c -o MatrixOps/cholmod_l_symmetry.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_vertcat.c -o MatrixOps/cholmod_vertcat.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_vertcat.c -o MatrixOps/cholmod_l_vertcat.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Modify/cholmod_rowadd.c -o Modify/cholmod_rowadd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Modify/cholmod_l_rowadd.c -o Modify/cholmod_l_rowadd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Modify/cholmod_rowdel.c -o Modify/cholmod_rowdel.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Modify/cholmod_l_rowdel.c -o Modify/cholmod_l_rowdel.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Modify/cholmod_updown.c -o Modify/cholmod_updown.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Modify/cholmod_l_updown.c -o Modify/cholmod_l_updown.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_camd.c -o Partition/cholmod_camd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_l_camd.c -o Partition/cholmod_l_camd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_ccolamd.c -o Partition/cholmod_ccolamd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_l_ccolamd.c -o Partition/cholmod_l_ccolamd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_csymamd.c -o Partition/cholmod_csymamd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_l_csymamd.c -o Partition/cholmod_l_csymamd.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_metis.c -o Partition/cholmod_metis.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_l_metis.c -o Partition/cholmod_l_metis.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_metis_wrapper.c -o Partition/cholmod_metis_wrapper.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_nesdis.c -o Partition/cholmod_nesdis.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Partition/cholmod_l_nesdis.c -o Partition/cholmod_l_nesdis.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Supernodal/cholmod_super_numeric.c -o Supernodal/cholmod_super_numeric.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Supernodal/cholmod_l_super_numeric.c -o Supernodal/cholmod_l_super_numeric.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Supernodal/cholmod_super_solve.c -o Supernodal/cholmod_super_solve.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Supernodal/cholmod_l_super_solve.c -o Supernodal/cholmod_l_super_solve.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Supernodal/cholmod_super_symbolic.c -o Supernodal/cholmod_super_symbolic.o
gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Supernodal/cholmod_l_super_symbolic.c -o Supernodal/cholmod_l_super_symbolic.o
rm -f CHOLMOD.a
ar -cr CHOLMOD.a Check/cholmod_check.o Check/cholmod_l_check.o Check/cholmod_read.o Check/cholmod_l_read.o Check/cholmod_write.o Check/cholmod_l_write.o Cholesky/cholmod_amd.o Cholesky/cholmod_l_amd.o Cholesky/cholmod_analyze.o Cholesky/cholmod_l_analyze.o Cholesky/cholmod_colamd.o Cholesky/cholmod_l_colamd.o Cholesky/cholmod_etree.o Cholesky/cholmod_l_etree.o Cholesky/cholmod_factorize.o Cholesky/cholmod_l_factorize.o Cholesky/cholmod_postorder.o Cholesky/cholmod_l_postorder.o Cholesky/cholmod_rcond.o Cholesky/cholmod_l_rcond.o Cholesky/cholmod_resymbol.o Cholesky/cholmod_l_resymbol.o Cholesky/cholmod_rowcolcounts.o Cholesky/cholmod_l_rowcolcounts.o Cholesky/cholmod_rowfac.o Cholesky/cholmod_l_rowfac.o Cholesky/cholmod_solve.o Cholesky/cholmod_l_solve.o Cholesky/cholmod_spsolve.o Cholesky/cholmod_l_spsolve.o Utility/cholmod_aat.o Utility/cholmod_l_aat.o Utility/cholmod_add.o Utility/cholmod_l_add.o Utility/cholmod_add_size_t.o Utility/cholmod_l_add_size_t.o Utility/cholmod_alloc_factor.o Utility/cholmod_l_alloc_factor.o Utility/cholmod_alloc_work.o Utility/cholmod_l_alloc_work.o Utility/cholmod_allocate_dense.o Utility/cholmod_l_allocate_dense.o Utility/cholmod_allocate_factor.o Utility/cholmod_l_allocate_factor.o Utility/cholmod_allocate_sparse.o Utility/cholmod_l_allocate_sparse.o Utility/cholmod_allocate_triplet.o Utility/cholmod_l_allocate_triplet.o Utility/cholmod_allocate_work.o Utility/cholmod_l_allocate_work.o Utility/cholmod_band.o Utility/cholmod_l_band.o Utility/cholmod_band_nnz.o Utility/cholmod_l_band_nnz.o Utility/cholmod_calloc.o Utility/cholmod_l_calloc.o Utility/cholmod_change_factor.o Utility/cholmod_l_change_factor.o Utility/cholmod_clear_flag.o Utility/cholmod_l_clear_flag.o Utility/cholmod_copy.o Utility/cholmod_l_copy.o Utility/cholmod_copy_dense.o Utility/cholmod_l_copy_dense.o Utility/cholmod_copy_dense2.o Utility/cholmod_l_copy_dense2.o Utility/cholmod_copy_factor.o Utility/cholmod_l_copy_factor.o Utility/cholmod_copy_sparse.o Utility/cholmod_l_copy_sparse.o Utility/cholmod_copy_triplet.o Utility/cholmod_l_copy_triplet.o Utility/cholmod_cumsum.o Utility/cholmod_l_cumsum.o Utility/cholmod_dbound.o Utility/cholmod_l_dbound.o Utility/cholmod_defaults.o Utility/cholmod_l_defaults.o Utility/cholmod_dense_nnz.o Utility/cholmod_l_dense_nnz.o Utility/cholmod_dense_to_sparse.o Utility/cholmod_l_dense_to_sparse.o Utility/cholmod_divcomplex.o Utility/cholmod_l_divcomplex.o Utility/cholmod_ensure_dense.o Utility/cholmod_l_ensure_dense.o Utility/cholmod_error.o Utility/cholmod_l_error.o Utility/cholmod_eye.o Utility/cholmod_l_eye.o Utility/cholmod_factor_to_sparse.o Utility/cholmod_l_factor_to_sparse.o Utility/cholmod_finish.o Utility/cholmod_l_finish.o Utility/cholmod_free.o Utility/cholmod_l_free.o Utility/cholmod_free_dense.o Utility/cholmod_l_free_dense.o Utility/cholmod_free_factor.o Utility/cholmod_l_free_factor.o Utility/cholmod_free_sparse.o Utility/cholmod_l_free_sparse.o Utility/cholmod_free_triplet.o Utility/cholmod_l_free_triplet.o Utility/cholmod_free_work.o Utility/cholmod_l_free_work.o Utility/cholmod_hypot.o Utility/cholmod_l_hypot.o Utility/cholmod_malloc.o Utility/cholmod_l_malloc.o Utility/cholmod_maxrank.o Utility/cholmod_l_maxrank.o Utility/cholmod_memdebug.o Utility/cholmod_mult_size_t.o Utility/cholmod_l_mult_size_t.o Utility/cholmod_mult_uint64_t.o Utility/cholmod_nnz.o Utility/cholmod_l_nnz.o Utility/cholmod_ones.o Utility/cholmod_l_ones.o Utility/cholmod_pack_factor.o Utility/cholmod_l_pack_factor.o Utility/cholmod_ptranspose.o Utility/cholmod_l_ptranspose.o Utility/cholmod_realloc.o Utility/cholmod_l_realloc.o Utility/cholmod_realloc_multiple.o Utility/cholmod_l_realloc_multiple.o Utility/cholmod_reallocate_column.o Utility/cholmod_l_reallocate_column.o Utility/cholmod_reallocate_factor.o Utility/cholmod_l_reallocate_factor.o Utility/cholmod_reallocate_sparse.o Utility/cholmod_l_reallocate_sparse.o Utility/cholmod_reallocate_triplet.o Utility/cholmod_l_reallocate_triplet.o Utility/cholmod_sbound.o Utility/cholmod_l_sbound.o Utility/cholmod_score_comp.o Utility/cholmod_l_score_comp.o Utility/cholmod_set_empty.o Utility/cholmod_l_set_empty.o Utility/cholmod_sort.o Utility/cholmod_l_sort.o Utility/cholmod_sparse_to_dense.o Utility/cholmod_l_sparse_to_dense.o Utility/cholmod_sparse_to_triplet.o Utility/cholmod_l_sparse_to_triplet.o Utility/cholmod_speye.o Utility/cholmod_l_speye.o Utility/cholmod_spzeros.o Utility/cholmod_l_spzeros.o Utility/cholmod_start.o Utility/cholmod_l_start.o Utility/cholmod_transpose.o Utility/cholmod_l_transpose.o Utility/cholmod_transpose_sym.o Utility/cholmod_l_transpose_sym.o Utility/cholmod_transpose_unsym.o Utility/cholmod_l_transpose_unsym.o Utility/cholmod_triplet_to_sparse.o Utility/cholmod_l_triplet_to_sparse.o Utility/cholmod_version.o Utility/cholmod_l_version.o Utility/cholmod_xtype.o Utility/cholmod_l_xtype.o Utility/cholmod_zeros.o Utility/cholmod_l_zeros.o MatrixOps/cholmod_drop.o MatrixOps/cholmod_l_drop.o MatrixOps/cholmod_horzcat.o MatrixOps/cholmod_l_horzcat.o MatrixOps/cholmod_norm.o MatrixOps/cholmod_l_norm.o MatrixOps/cholmod_scale.o MatrixOps/cholmod_l_scale.o MatrixOps/cholmod_sdmult.o MatrixOps/cholmod_l_sdmult.o MatrixOps/cholmod_ssmult.o MatrixOps/cholmod_l_ssmult.o MatrixOps/cholmod_submatrix.o MatrixOps/cholmod_l_submatrix.o MatrixOps/cholmod_symmetry.o MatrixOps/cholmod_l_symmetry.o MatrixOps/cholmod_vertcat.o MatrixOps/cholmod_l_vertcat.o Modify/cholmod_rowadd.o Modify/cholmod_l_rowadd.o Modify/cholmod_rowdel.o Modify/cholmod_l_rowdel.o Modify/cholmod_updown.o Modify/cholmod_l_updown.o Partition/cholmod_camd.o Partition/cholmod_l_camd.o Partition/cholmod_ccolamd.o Partition/cholmod_l_ccolamd.o Partition/cholmod_csymamd.o Partition/cholmod_l_csymamd.o Partition/cholmod_metis.o Partition/cholmod_l_metis.o Partition/cholmod_metis_wrapper.o Partition/cholmod_nesdis.o Partition/cholmod_l_nesdis.o Supernodal/cholmod_super_numeric.o Supernodal/cholmod_l_super_numeric.o Supernodal/cholmod_super_solve.o Supernodal/cholmod_l_super_solve.o Supernodal/cholmod_super_symbolic.o Supernodal/cholmod_l_super_symbolic.o
ranlib CHOLMOD.a
make[4]: Leaving directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/CHOLMOD'
cd SuiteSparse/CCOLAMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.3/include\" -I\"/builddir/build/BUILD/R-4.4.3/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/CCOLAMD'
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/ccolamd.c -o Source/ccolamd.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/ccolamd_l.c -o Source/ccolamd_l.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/ccolamd_version.c -o Source/ccolamd_version.o
rm -f CCOLAMD.a
ar -cr CCOLAMD.a Source/ccolamd.o Source/ccolamd_l.o Source/ccolamd_version.o
ranlib CCOLAMD.a
make[4]: Leaving directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/CCOLAMD'
cd SuiteSparse/CAMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.3/include\" -I\"/builddir/build/BUILD/R-4.4.3/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/CAMD'
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_1.c -o Source/camd_1.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l1.c -o Source/camd_l1.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_2.c -o Source/camd_2.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l2.c -o Source/camd_l2.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_aat.c -o Source/camd_aat.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l_aat.c -o Source/camd_l_aat.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_control.c -o Source/camd_control.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l_control.c -o Source/camd_l_control.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_defaults.c -o Source/camd_defaults.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l_defaults.c -o Source/camd_l_defaults.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_dump.c -o Source/camd_dump.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l_dump.c -o Source/camd_l_dump.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_info.c -o Source/camd_info.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l_info.c -o Source/camd_l_info.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_order.c -o Source/camd_order.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l_order.c -o Source/camd_l_order.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_postorder.c -o Source/camd_postorder.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l_postorder.c -o Source/camd_l_postorder.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_preprocess.c -o Source/camd_preprocess.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l_preprocess.c -o Source/camd_l_preprocess.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_valid.c -o Source/camd_valid.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_l_valid.c -o Source/camd_l_valid.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/camd_version.c -o Source/camd_version.o
rm -f CAMD.a
ar -cr CAMD.a Source/camd_1.o Source/camd_l1.o Source/camd_2.o Source/camd_l2.o Source/camd_aat.o Source/camd_l_aat.o Source/camd_control.o Source/camd_l_control.o Source/camd_defaults.o Source/camd_l_defaults.o Source/camd_dump.o Source/camd_l_dump.o Source/camd_info.o Source/camd_l_info.o Source/camd_order.o Source/camd_l_order.o Source/camd_postorder.o Source/camd_l_postorder.o Source/camd_preprocess.o Source/camd_l_preprocess.o Source/camd_valid.o Source/camd_l_valid.o Source/camd_version.o
ranlib CAMD.a
make[4]: Leaving directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/CAMD'
cd SuiteSparse/COLAMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.3/include\" -I\"/builddir/build/BUILD/R-4.4.3/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/COLAMD'
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/colamd.c -o Source/colamd.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/colamd_l.c -o Source/colamd_l.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/colamd_version.c -o Source/colamd_version.o
rm -f COLAMD.a
ar -cr COLAMD.a Source/colamd.o Source/colamd_l.o Source/colamd_version.o
ranlib COLAMD.a
make[4]: Leaving directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/COLAMD'
cd SuiteSparse/AMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.3/include\" -I\"/builddir/build/BUILD/R-4.4.3/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/AMD'
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_1.c -o Source/amd_1.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l1.c -o Source/amd_l1.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_2.c -o Source/amd_2.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l2.c -o Source/amd_l2.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_aat.c -o Source/amd_aat.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l_aat.c -o Source/amd_l_aat.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_control.c -o Source/amd_control.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l_control.c -o Source/amd_l_control.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_defaults.c -o Source/amd_defaults.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l_defaults.c -o Source/amd_l_defaults.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_dump.c -o Source/amd_dump.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l_dump.c -o Source/amd_l_dump.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_info.c -o Source/amd_info.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l_info.c -o Source/amd_l_info.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_order.c -o Source/amd_order.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l_order.c -o Source/amd_l_order.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_post_tree.c -o Source/amd_post_tree.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l_post_tree.c -o Source/amd_l_post_tree.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_postorder.c -o Source/amd_postorder.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l_postorder.c -o Source/amd_l_postorder.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_preprocess.c -o Source/amd_preprocess.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l_preprocess.c -o Source/amd_l_preprocess.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_valid.c -o Source/amd_valid.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_l_valid.c -o Source/amd_l_valid.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/amd_version.c -o Source/amd_version.o
rm -f AMD.a
ar -cr AMD.a Source/amd_1.o Source/amd_l1.o Source/amd_2.o Source/amd_l2.o Source/amd_aat.o Source/amd_l_aat.o Source/amd_control.o Source/amd_l_control.o Source/amd_defaults.o Source/amd_l_defaults.o Source/amd_dump.o Source/amd_l_dump.o Source/amd_info.o Source/amd_l_info.o Source/amd_order.o Source/amd_l_order.o Source/amd_post_tree.o Source/amd_l_post_tree.o Source/amd_postorder.o Source/amd_l_postorder.o Source/amd_preprocess.o Source/amd_l_preprocess.o Source/amd_valid.o Source/amd_l_valid.o Source/amd_version.o
ranlib AMD.a
make[4]: Leaving directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/AMD'
cd SuiteSparse/CXSparse && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.3/include\" -I\"/builddir/build/BUILD/R-4.4.3/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/CXSparse'
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_add.c -o Source/cs_add.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_add.c -o Source/cs_dl_add.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_add.c -o Source/cs_ci_add.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_add.c -o Source/cs_cl_add.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_amd.c -o Source/cs_amd.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_amd.c -o Source/cs_dl_amd.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_amd.c -o Source/cs_ci_amd.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_amd.c -o Source/cs_cl_amd.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_chol.c -o Source/cs_chol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_chol.c -o Source/cs_dl_chol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_chol.c -o Source/cs_ci_chol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_chol.c -o Source/cs_cl_chol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cholsol.c -o Source/cs_cholsol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_cholsol.c -o Source/cs_dl_cholsol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_cholsol.c -o Source/cs_ci_cholsol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_cholsol.c -o Source/cs_cl_cholsol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_compress.c -o Source/cs_compress.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_compress.c -o Source/cs_dl_compress.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_compress.c -o Source/cs_ci_compress.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_compress.c -o Source/cs_cl_compress.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_convert.c -o Source/cs_convert.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_counts.c -o Source/cs_counts.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_counts.c -o Source/cs_dl_counts.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_counts.c -o Source/cs_ci_counts.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_counts.c -o Source/cs_cl_counts.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cumsum.c -o Source/cs_cumsum.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_cumsum.c -o Source/cs_dl_cumsum.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_cumsum.c -o Source/cs_ci_cumsum.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_cumsum.c -o Source/cs_cl_cumsum.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dfs.c -o Source/cs_dfs.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_dfs.c -o Source/cs_dl_dfs.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_dfs.c -o Source/cs_ci_dfs.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_dfs.c -o Source/cs_cl_dfs.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dmperm.c -o Source/cs_dmperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_dmperm.c -o Source/cs_dl_dmperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_dmperm.c -o Source/cs_ci_dmperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_dmperm.c -o Source/cs_cl_dmperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_droptol.c -o Source/cs_droptol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_droptol.c -o Source/cs_dl_droptol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_droptol.c -o Source/cs_ci_droptol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_droptol.c -o Source/cs_cl_droptol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dropzeros.c -o Source/cs_dropzeros.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_dropzeros.c -o Source/cs_dl_dropzeros.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_dropzeros.c -o Source/cs_ci_dropzeros.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_dropzeros.c -o Source/cs_cl_dropzeros.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dupl.c -o Source/cs_dupl.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_dupl.c -o Source/cs_dl_dupl.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_dupl.c -o Source/cs_ci_dupl.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_dupl.c -o Source/cs_cl_dupl.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_entry.c -o Source/cs_entry.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_entry.c -o Source/cs_dl_entry.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_entry.c -o Source/cs_ci_entry.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_entry.c -o Source/cs_cl_entry.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ereach.c -o Source/cs_ereach.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_ereach.c -o Source/cs_dl_ereach.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_ereach.c -o Source/cs_ci_ereach.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_ereach.c -o Source/cs_cl_ereach.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_etree.c -o Source/cs_etree.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_etree.c -o Source/cs_dl_etree.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_etree.c -o Source/cs_ci_etree.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_etree.c -o Source/cs_cl_etree.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_fkeep.c -o Source/cs_fkeep.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_fkeep.c -o Source/cs_dl_fkeep.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_fkeep.c -o Source/cs_ci_fkeep.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_fkeep.c -o Source/cs_cl_fkeep.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_gaxpy.c -o Source/cs_gaxpy.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_gaxpy.c -o Source/cs_dl_gaxpy.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_gaxpy.c -o Source/cs_ci_gaxpy.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_gaxpy.c -o Source/cs_cl_gaxpy.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_happly.c -o Source/cs_happly.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_happly.c -o Source/cs_dl_happly.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_happly.c -o Source/cs_ci_happly.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_happly.c -o Source/cs_cl_happly.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_house.c -o Source/cs_house.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_house.c -o Source/cs_dl_house.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_house.c -o Source/cs_ci_house.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_house.c -o Source/cs_cl_house.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ipvec.c -o Source/cs_ipvec.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_ipvec.c -o Source/cs_dl_ipvec.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_ipvec.c -o Source/cs_ci_ipvec.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_ipvec.c -o Source/cs_cl_ipvec.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_leaf.c -o Source/cs_leaf.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_leaf.c -o Source/cs_dl_leaf.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_leaf.c -o Source/cs_ci_leaf.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_leaf.c -o Source/cs_cl_leaf.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_load.c -o Source/cs_load.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_load.c -o Source/cs_dl_load.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_load.c -o Source/cs_ci_load.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_load.c -o Source/cs_cl_load.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_lsolve.c -o Source/cs_lsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_lsolve.c -o Source/cs_dl_lsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_lsolve.c -o Source/cs_ci_lsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_lsolve.c -o Source/cs_cl_lsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ltsolve.c -o Source/cs_ltsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_ltsolve.c -o Source/cs_dl_ltsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_ltsolve.c -o Source/cs_ci_ltsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_ltsolve.c -o Source/cs_cl_ltsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_lu.c -o Source/cs_lu.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_lu.c -o Source/cs_dl_lu.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_lu.c -o Source/cs_ci_lu.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_lu.c -o Source/cs_cl_lu.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_lusol.c -o Source/cs_lusol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_lusol.c -o Source/cs_dl_lusol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_lusol.c -o Source/cs_ci_lusol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_lusol.c -o Source/cs_cl_lusol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_malloc.c -o Source/cs_malloc.o
Source/cs_malloc.c: In function ‘cs_di_realloc’:
Source/cs_malloc.c:37:26: warning: pointer ‘p_11(D)’ may be used after ‘realloc’ [-Wuse-after-free]
   37 |     return ((*ok) ? pnew : p) ;             /* return original p if failure */
      |            ~~~~~~~~~~~~~~^~~~
Source/cs_malloc.c:35:12: note: call to ‘realloc’ here
   35 |     pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_malloc.c -o Source/cs_dl_malloc.o
In file included from Source/cs_dl_malloc.c:9:
Source/cs_malloc.c: In function ‘cs_dl_realloc’:
Source/cs_malloc.c:37:26: warning: pointer ‘p_11(D)’ may be used after ‘realloc’ [-Wuse-after-free]
   37 |     return ((*ok) ? pnew : p) ;             /* return original p if failure */
      |            ~~~~~~~~~~~~~~^~~~
Source/cs_malloc.c:35:12: note: call to ‘realloc’ here
   35 |     pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_malloc.c -o Source/cs_ci_malloc.o
In file included from Source/cs_ci_malloc.c:9:
Source/cs_malloc.c: In function ‘cs_ci_realloc’:
Source/cs_malloc.c:37:26: warning: pointer ‘p_11(D)’ may be used after ‘realloc’ [-Wuse-after-free]
   37 |     return ((*ok) ? pnew : p) ;             /* return original p if failure */
      |            ~~~~~~~~~~~~~~^~~~
Source/cs_malloc.c:35:12: note: call to ‘realloc’ here
   35 |     pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_malloc.c -o Source/cs_cl_malloc.o
In file included from Source/cs_cl_malloc.c:10:
Source/cs_malloc.c: In function ‘cs_cl_realloc’:
Source/cs_malloc.c:37:26: warning: pointer ‘p_11(D)’ may be used after ‘realloc’ [-Wuse-after-free]
   37 |     return ((*ok) ? pnew : p) ;             /* return original p if failure */
      |            ~~~~~~~~~~~~~~^~~~
Source/cs_malloc.c:35:12: note: call to ‘realloc’ here
   35 |     pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_maxtrans.c -o Source/cs_maxtrans.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_maxtrans.c -o Source/cs_dl_maxtrans.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_maxtrans.c -o Source/cs_ci_maxtrans.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_maxtrans.c -o Source/cs_cl_maxtrans.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_multiply.c -o Source/cs_multiply.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_multiply.c -o Source/cs_dl_multiply.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_multiply.c -o Source/cs_ci_multiply.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_multiply.c -o Source/cs_cl_multiply.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_norm.c -o Source/cs_norm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_norm.c -o Source/cs_dl_norm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_norm.c -o Source/cs_ci_norm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_norm.c -o Source/cs_cl_norm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_permute.c -o Source/cs_permute.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_permute.c -o Source/cs_dl_permute.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_permute.c -o Source/cs_ci_permute.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_permute.c -o Source/cs_cl_permute.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_pinv.c -o Source/cs_pinv.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_pinv.c -o Source/cs_dl_pinv.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_pinv.c -o Source/cs_ci_pinv.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_pinv.c -o Source/cs_cl_pinv.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_post.c -o Source/cs_post.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_post.c -o Source/cs_dl_post.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_post.c -o Source/cs_ci_post.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_post.c -o Source/cs_cl_post.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_print.c -o Source/cs_print.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_print.c -o Source/cs_dl_print.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_print.c -o Source/cs_ci_print.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_print.c -o Source/cs_cl_print.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_pvec.c -o Source/cs_pvec.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_pvec.c -o Source/cs_dl_pvec.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_pvec.c -o Source/cs_ci_pvec.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_pvec.c -o Source/cs_cl_pvec.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_qr.c -o Source/cs_qr.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_qr.c -o Source/cs_dl_qr.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_qr.c -o Source/cs_ci_qr.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_qr.c -o Source/cs_cl_qr.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_qrsol.c -o Source/cs_qrsol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_qrsol.c -o Source/cs_dl_qrsol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_qrsol.c -o Source/cs_ci_qrsol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_qrsol.c -o Source/cs_cl_qrsol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_randperm.c -o Source/cs_randperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_randperm.c -o Source/cs_dl_randperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_randperm.c -o Source/cs_ci_randperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_randperm.c -o Source/cs_cl_randperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_reach.c -o Source/cs_reach.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_reach.c -o Source/cs_dl_reach.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_reach.c -o Source/cs_ci_reach.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_reach.c -o Source/cs_cl_reach.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_scatter.c -o Source/cs_scatter.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_scatter.c -o Source/cs_dl_scatter.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_scatter.c -o Source/cs_ci_scatter.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_scatter.c -o Source/cs_cl_scatter.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_scc.c -o Source/cs_scc.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_scc.c -o Source/cs_dl_scc.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_scc.c -o Source/cs_ci_scc.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_scc.c -o Source/cs_cl_scc.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_schol.c -o Source/cs_schol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_schol.c -o Source/cs_dl_schol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_schol.c -o Source/cs_ci_schol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_schol.c -o Source/cs_cl_schol.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_spsolve.c -o Source/cs_spsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_spsolve.c -o Source/cs_dl_spsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_spsolve.c -o Source/cs_ci_spsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_spsolve.c -o Source/cs_cl_spsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_sqr.c -o Source/cs_sqr.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_sqr.c -o Source/cs_dl_sqr.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_sqr.c -o Source/cs_ci_sqr.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_sqr.c -o Source/cs_cl_sqr.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_symperm.c -o Source/cs_symperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_symperm.c -o Source/cs_dl_symperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_symperm.c -o Source/cs_ci_symperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_symperm.c -o Source/cs_cl_symperm.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_tdfs.c -o Source/cs_tdfs.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_tdfs.c -o Source/cs_dl_tdfs.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_tdfs.c -o Source/cs_ci_tdfs.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_tdfs.c -o Source/cs_cl_tdfs.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_transpose.c -o Source/cs_transpose.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_transpose.c -o Source/cs_dl_transpose.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_transpose.c -o Source/cs_ci_transpose.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_transpose.c -o Source/cs_cl_transpose.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_updown.c -o Source/cs_updown.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_updown.c -o Source/cs_dl_updown.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_updown.c -o Source/cs_ci_updown.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_updown.c -o Source/cs_cl_updown.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_usolve.c -o Source/cs_usolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_usolve.c -o Source/cs_dl_usolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_usolve.c -o Source/cs_ci_usolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_usolve.c -o Source/cs_cl_usolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_util.c -o Source/cs_util.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_util.c -o Source/cs_dl_util.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_util.c -o Source/cs_ci_util.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_util.c -o Source/cs_cl_util.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_utsolve.c -o Source/cs_utsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_dl_utsolve.c -o Source/cs_dl_utsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_ci_utsolve.c -o Source/cs_ci_utsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cs_cl_utsolve.c -o Source/cs_cl_utsolve.o
gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c Source/cxsparse_version.c -o Source/cxsparse_version.o
rm -f CXSparse.a
ar -cr CXSparse.a Source/cs_add.o Source/cs_dl_add.o Source/cs_ci_add.o Source/cs_cl_add.o Source/cs_amd.o Source/cs_dl_amd.o Source/cs_ci_amd.o Source/cs_cl_amd.o Source/cs_chol.o Source/cs_dl_chol.o Source/cs_ci_chol.o Source/cs_cl_chol.o Source/cs_cholsol.o Source/cs_dl_cholsol.o Source/cs_ci_cholsol.o Source/cs_cl_cholsol.o Source/cs_compress.o Source/cs_dl_compress.o Source/cs_ci_compress.o Source/cs_cl_compress.o Source/cs_convert.o Source/cs_counts.o Source/cs_dl_counts.o Source/cs_ci_counts.o Source/cs_cl_counts.o Source/cs_cumsum.o Source/cs_dl_cumsum.o Source/cs_ci_cumsum.o Source/cs_cl_cumsum.o Source/cs_dfs.o Source/cs_dl_dfs.o Source/cs_ci_dfs.o Source/cs_cl_dfs.o Source/cs_dmperm.o Source/cs_dl_dmperm.o Source/cs_ci_dmperm.o Source/cs_cl_dmperm.o Source/cs_droptol.o Source/cs_dl_droptol.o Source/cs_ci_droptol.o Source/cs_cl_droptol.o Source/cs_dropzeros.o Source/cs_dl_dropzeros.o Source/cs_ci_dropzeros.o Source/cs_cl_dropzeros.o Source/cs_dupl.o Source/cs_dl_dupl.o Source/cs_ci_dupl.o Source/cs_cl_dupl.o Source/cs_entry.o Source/cs_dl_entry.o Source/cs_ci_entry.o Source/cs_cl_entry.o Source/cs_ereach.o Source/cs_dl_ereach.o Source/cs_ci_ereach.o Source/cs_cl_ereach.o Source/cs_etree.o Source/cs_dl_etree.o Source/cs_ci_etree.o Source/cs_cl_etree.o Source/cs_fkeep.o Source/cs_dl_fkeep.o Source/cs_ci_fkeep.o Source/cs_cl_fkeep.o Source/cs_gaxpy.o Source/cs_dl_gaxpy.o Source/cs_ci_gaxpy.o Source/cs_cl_gaxpy.o Source/cs_happly.o Source/cs_dl_happly.o Source/cs_ci_happly.o Source/cs_cl_happly.o Source/cs_house.o Source/cs_dl_house.o Source/cs_ci_house.o Source/cs_cl_house.o Source/cs_ipvec.o Source/cs_dl_ipvec.o Source/cs_ci_ipvec.o Source/cs_cl_ipvec.o Source/cs_leaf.o Source/cs_dl_leaf.o Source/cs_ci_leaf.o Source/cs_cl_leaf.o Source/cs_load.o Source/cs_dl_load.o Source/cs_ci_load.o Source/cs_cl_load.o Source/cs_lsolve.o Source/cs_dl_lsolve.o Source/cs_ci_lsolve.o Source/cs_cl_lsolve.o Source/cs_ltsolve.o Source/cs_dl_ltsolve.o Source/cs_ci_ltsolve.o Source/cs_cl_ltsolve.o Source/cs_lu.o Source/cs_dl_lu.o Source/cs_ci_lu.o Source/cs_cl_lu.o Source/cs_lusol.o Source/cs_dl_lusol.o Source/cs_ci_lusol.o Source/cs_cl_lusol.o Source/cs_malloc.o Source/cs_dl_malloc.o Source/cs_ci_malloc.o Source/cs_cl_malloc.o Source/cs_maxtrans.o Source/cs_dl_maxtrans.o Source/cs_ci_maxtrans.o Source/cs_cl_maxtrans.o Source/cs_multiply.o Source/cs_dl_multiply.o Source/cs_ci_multiply.o Source/cs_cl_multiply.o Source/cs_norm.o Source/cs_dl_norm.o Source/cs_ci_norm.o Source/cs_cl_norm.o Source/cs_permute.o Source/cs_dl_permute.o Source/cs_ci_permute.o Source/cs_cl_permute.o Source/cs_pinv.o Source/cs_dl_pinv.o Source/cs_ci_pinv.o Source/cs_cl_pinv.o Source/cs_post.o Source/cs_dl_post.o Source/cs_ci_post.o Source/cs_cl_post.o Source/cs_print.o Source/cs_dl_print.o Source/cs_ci_print.o Source/cs_cl_print.o Source/cs_pvec.o Source/cs_dl_pvec.o Source/cs_ci_pvec.o Source/cs_cl_pvec.o Source/cs_qr.o Source/cs_dl_qr.o Source/cs_ci_qr.o Source/cs_cl_qr.o Source/cs_qrsol.o Source/cs_dl_qrsol.o Source/cs_ci_qrsol.o Source/cs_cl_qrsol.o Source/cs_randperm.o Source/cs_dl_randperm.o Source/cs_ci_randperm.o Source/cs_cl_randperm.o Source/cs_reach.o Source/cs_dl_reach.o Source/cs_ci_reach.o Source/cs_cl_reach.o Source/cs_scatter.o Source/cs_dl_scatter.o Source/cs_ci_scatter.o Source/cs_cl_scatter.o Source/cs_scc.o Source/cs_dl_scc.o Source/cs_ci_scc.o Source/cs_cl_scc.o Source/cs_schol.o Source/cs_dl_schol.o Source/cs_ci_schol.o Source/cs_cl_schol.o Source/cs_spsolve.o Source/cs_dl_spsolve.o Source/cs_ci_spsolve.o Source/cs_cl_spsolve.o Source/cs_sqr.o Source/cs_dl_sqr.o Source/cs_ci_sqr.o Source/cs_cl_sqr.o Source/cs_symperm.o Source/cs_dl_symperm.o Source/cs_ci_symperm.o Source/cs_cl_symperm.o Source/cs_tdfs.o Source/cs_dl_tdfs.o Source/cs_ci_tdfs.o Source/cs_cl_tdfs.o Source/cs_transpose.o Source/cs_dl_transpose.o Source/cs_ci_transpose.o Source/cs_cl_transpose.o Source/cs_updown.o Source/cs_dl_updown.o Source/cs_ci_updown.o Source/cs_cl_updown.o Source/cs_usolve.o Source/cs_dl_usolve.o Source/cs_ci_usolve.o Source/cs_cl_usolve.o Source/cs_util.o Source/cs_dl_util.o Source/cs_ci_util.o Source/cs_cl_util.o Source/cs_utsolve.o Source/cs_dl_utsolve.o Source/cs_ci_utsolve.o Source/cs_cl_utsolve.o Source/cxsparse_version.o
ranlib CXSparse.a
make[4]: Leaving directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/CXSparse'
cd SuiteSparse/SuiteSparse_config && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.3/include\" -I\"/builddir/build/BUILD/R-4.4.3/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/SuiteSparse_config'
gcc -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.3/include" -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -fPIC -fvisibility=hidden -c SuiteSparse_config.c -o SuiteSparse_config.o
rm -f SuiteSparse_config.a
ar -cr SuiteSparse_config.a SuiteSparse_config.o
ranlib SuiteSparse_config.a
make[4]: Leaving directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src/SuiteSparse/SuiteSparse_config'
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Matrix.so Csparse.o attrib.o bind.o cholmod-common.o cholmod-etc.o coerce.o cs-etc.o dense.o determinant.o expm.o factor.o idz.o init.o kappa.o matmult.o objects.o perm.o solve.o sparse.o subassign.o subscript.o utils-R.o utils.o validity.o vector.o SuiteSparse/CHOLMOD/CHOLMOD.a SuiteSparse/CCOLAMD/CCOLAMD.a SuiteSparse/CAMD/CAMD.a SuiteSparse/COLAMD/COLAMD.a SuiteSparse/AMD/AMD.a SuiteSparse/CXSparse/CXSparse.a SuiteSparse/SuiteSparse_config/SuiteSparse_config.a -lflexiblas -lgfortran -lm -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpQKeMoL/R.INSTALL46e2be40559/Matrix/src'
installing to /builddir/build/BUILD/R-4.4.3/library/Matrix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘chol2inv’ from ‘base’ in package ‘Matrix’
    (from the saved implicit definition)
Creating a generic function for ‘chol2inv’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘diag’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘zapsmall’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘drop’ from package ‘base’ in package ‘Matrix’
in method for ‘coerce’ with signature ‘"matrix.csc","dgCMatrix"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"matrix.csr","dgRMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.coo","dgTMatrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"matrix.csr","dgCMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.coo","dgCMatrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"matrix.csc","CsparseMatrix"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"matrix.csc","RsparseMatrix"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"matrix.csc","TsparseMatrix"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"matrix.csr","CsparseMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.csr","RsparseMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.csr","TsparseMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.coo","CsparseMatrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"matrix.coo","RsparseMatrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"matrix.coo","TsparseMatrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"matrix.csc","sparseMatrix"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"matrix.csr","sparseMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.coo","sparseMatrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"matrix.csc","Matrix"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"matrix.csr","Matrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.coo","Matrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"dgCMatrix","matrix.csc"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"dgRMatrix","matrix.csr"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"dgTMatrix","matrix.coo"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"Matrix","matrix.csc"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"Matrix","matrix.csr"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"Matrix","matrix.coo"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"graphAM","TsparseMatrix"’: no definition for class “graphAM”
in method for ‘coerce’ with signature ‘"graphNEL","TsparseMatrix"’: no definition for class “graphNEL”
in method for ‘coerce’ with signature ‘"graph","CsparseMatrix"’: no definition for class “graph”
in method for ‘coerce’ with signature ‘"graph","RsparseMatrix"’: no definition for class “graph”
in method for ‘coerce’ with signature ‘"graph","TsparseMatrix"’: no definition for class “graph”
in method for ‘coerce’ with signature ‘"graph","sparseMatrix"’: no definition for class “graph”
in method for ‘coerce’ with signature ‘"graph","Matrix"’: no definition for class “graph”
in method for ‘coerce’ with signature ‘"TsparseMatrix","graphNEL"’: no definition for class “graphNEL”
in method for ‘coerce’ with signature ‘"Matrix","graphNEL"’: no definition for class “graphNEL”
in method for ‘coerce’ with signature ‘"Matrix","graph"’: no definition for class “graph”
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘unname’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘norm’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘rcond’ from ‘base’ in package ‘Matrix’
    (from the saved implicit definition)
Creating a generic function for ‘rcond’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘Matrix’
Creating a generic function for ‘qr.Q’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.R’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.X’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.coef’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.fitted’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.resid’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.qty’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.qy’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘toeplitz’ from ‘stats’ in package ‘Matrix’
    (from the saved implicit definition)
Creating a generic function for ‘toeplitz’ from package ‘stats’ in package ‘Matrix’
Creating a generic function for ‘which’ from package ‘base’ in package ‘Matrix’
** help
*** installing help indices
  converting help for package ‘Matrix’
    finding HTML links ... done
    BunchKaufman-class                      html  
    BunchKaufman-methods                    html  
    CAex                                    html  
    CHMfactor-class                         html  
    Cholesky-class                          html  
    Cholesky-methods                        html  
    CsparseMatrix-class                     html  
    Diagonal                                html  
    Hilbert                                 html  
    KNex                                    html  
    KhatriRao                               html  
    Matrix-class                            html  
    Matrix-defunct                          html  
    Matrix-deprecated                       html  
    Matrix-notyet                           html  
    Matrix                                  html  
    MatrixClass                             html  
    MatrixFactorization-class               html  
    RsparseMatrix-class                     html  
    Schur-class                             html  
    Schur-methods                           html  
    TsparseMatrix-class                     html  
    USCounties                              html  
    abIndex-class                           html  
    abIseq                                  html  
    all.equal-methods                       html  
    asUniqueT                               html  
    band-methods                            html  
    bandSparse                              html  
    bdiag                                   html  
    boolmatmult-methods                     html  
    cbind2-methods                          html  
    chol-methods                            html  
    chol2inv-methods                        html  
    coerce-methods-SparseM                  html  
    coerce-methods-graph                    html  
    colSums-methods                         html  
    condest                                 html  
    dMatrix-class                           html  
    ddenseMatrix-class                      html  
    ddiMatrix-class                         html  
    denseLU-class                           html  
    denseMatrix-class                       html  
    dgCMatrix-class                         html  
    dgRMatrix-class                         html  
    dgTMatrix-class                         html  
    dgeMatrix-class                         html  
    diagU2N                                 html  
    diagonalMatrix-class                    html  
    dimScale                                html  
    dmperm                                  html  
    dpoMatrix-class                         html  
    drop0                                   html  
    dsCMatrix-class                         html  
    dsRMatrix-class                         html  
    dsparseMatrix-class                     html  
    dsyMatrix-class                         html  
    dtCMatrix-class                         html  
    dtRMatrix-class-sparse                  html  
    dtpMatrix-class                         html  
    dtrMatrix-class-dense                   html  
    expand-methods                          html  
    expm-methods                            html  
    externalFormats                         html  
    facmul-methods                          html  
    fastMisc                                html  
    forceSymmetric-methods                  html  
    formatSparseM                           html  
    generalMatrix-class                     html  
    image-methods                           html  
    indMatrix-class                         html  
    index-class                             html  
    invertPerm                              html  
    is.na-methods                           html  
    is.null.DN                              html  
    isSymmetric-methods                     html  
    isTriangular-methods                    html  
    kronecker-methods                       html  
    ldenseMatrix-class                      html  
    ldiMatrix-class                         html  
    lgeMatrix-class                         html  
    lsparseMatrix-class                     html  
    lsyMatrix-class                         html  
    ltrMatrix-class                         html  
    lu-methods                              html  
    mat2triplet                             html  
    matmult-methods                         html  
    nMatrix-class                           html  
    ndenseMatrix-class                      html  
    nearPD                                  html  
    ngeMatrix-class                         html  
    nnzero-methods                          html  
    norm-methods                            html  
    nsparseMatrix-class                     html  
    nsyMatrix-class                         html  
    ntrMatrix-class                         html  
    pMatrix-class                           html  
    pack-methods                            html  
    packedMatrix-class                      html  
    printSpMatrix                           html  
    qr-methods                              html  
    rankMatrix                              html  
    rcond-methods                           html  
    rep2abI                                 html  
    rleDiff-class                           html  
    rsparsematrix                           html  
    solve-methods                           html  
    spMatrix                                html  
    sparse.model.matrix                     html  
    sparseLU-class                          html  
    sparseMatrix-class                      html  
    sparseMatrix                            html  
    sparseQR-class                          html  
    sparseVector-class                      html  
    sparseVector                            html  
    subassign-methods                       html  
    subscript-methods                       html  
    symmetricMatrix-class                   html  
    symmpart-methods                        html  
    triangularMatrix-class                  html  
    unpackedMatrix-class                    html  
    updown-methods                          html  
    wrld_1deg                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Matrix)
Making 'packages.html' ... done
begin installing recommended package nlme
* installing *source* package ‘nlme’ ...
** package ‘nlme’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/RtmpLwXiAa/R.INSTALL4e9677cb766/nlme/src'
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c chol.f -o chol.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c corStruct.c -o corStruct.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gnls.c -o gnls.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c matrix.c -o matrix.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c nlOptimizer.c -o nlOptimizer.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c nlme.c -o nlme.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c nlmefit.c -o nlmefit.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pdMat.c -o pdMat.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pythag.c -o pythag.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c rs.f -o rs.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpLwXiAa/R.INSTALL4e9677cb766/nlme/src'
installing to /builddir/build/BUILD/R-4.4.3/library/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘nlme’
    finding HTML links ... done
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    ACF.gls                                 html  
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    Dim.corSpatial                          html  
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    Dim.pdMat                               html  
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    Glucose2                                html  
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    corFactor.corStruct                     html  
    corGaus                                 html  
    corLin                                  html  
    corMatrix                               html  
    corMatrix.corStruct                     html  
    corMatrix.pdMat                         html  
    corMatrix.reStruct                      html  
    corNatural                              html  
    corRatio                                html  
    corSpatial                              html  
    corSpher                                html  
    corSymm                                 html  
    ergoStool                               html  
    fdHess                                  html  
    fitted.glsStruct                        html  
    fitted.gnlsStruct                       html  
    fitted.lmList                           html  
    fitted.lme                              html  
    fitted.lmeStruct                        html  
    fitted.nlmeStruct                       html  
    fixed.effects                           html  
    fixef.lmList                            html  
    formula.pdBlocked                       html  
    formula.pdMat                           html  
    formula.reStruct                        html  
    gapply                                  html  
    getCovariate                            html  
    getCovariate.corStruct                  html  
    getCovariate.data.frame                 html  
    getCovariate.varFunc                    html  
    getCovariateFormula                     html  
    getData                                 html  
    getData.gls                             html  
    getData.lmList                          html  
    getData.lme                             html  
    getGroups                               html  
    getGroups.corStruct                     html  
    getGroups.data.frame                    html  
    getGroups.gls                           html  
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    getGroups.lme                           html  
    getGroups.varFunc                       html  
    getGroupsFormula                        html  
    getResponse                             html  
    getResponseFormula                      html  
    getVarCov                               html  
    gls-internal                            html  
    gls                                     html  
    glsControl                              html  
    glsObject                               html  
    glsStruct                               html  
    gnls                                    html  
    gnlsControl                             html  
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    gnlsStruct                              html  
    groupedData                             html  
    gsummary                                html  
    intervals                               html  
    intervals.gls                           html  
    intervals.lmList                        html  
    intervals.lme                           html  
    isBalanced                              html  
    isInitialized                           html  
    lmList                                  html  
    lmList.groupedData                      html  
    lme                                     html  
    lme.groupedData                         html  
    lme.lmList                              html  
    lmeControl                              html  
    lmeObject                               html  
    lmeStruct                               html  
    logDet                                  html  
    logDet.corStruct                        html  
    logDet.pdMat                            html  
    logDet.reStruct                         html  
    logLik.corStruct                        html  
    logLik.glsStruct                        html  
    logLik.gnls                             html  
    logLik.gnlsStruct                       html  
    logLik.lmList                           html  
    logLik.lme                              html  
    logLik.lmeStruct                        html  
    logLik.reStruct                         html  
    logLik.varFunc                          html  
    model.matrix.reStruct                   html  
    needUpdate                              html  
    needUpdate.modelStruct                  html  
    nlme-deprecated                         html  
    nlme                                    html  
    nlme.nlsList                            html  
    nlmeControl                             html  
    nlmeObject                              html  
    nlmeStruct                              html  
    nlsList                                 html  
    nlsList.selfStart                       html  
    pairs.compareFits                       html  
    pairs.lmList                            html  
    pairs.lme                               html  
    pdBlocked                               html  
    pdClasses                               html  
    pdCompSymm                              html  
    pdConstruct                             html  
    pdConstruct.pdBlocked                   html  
    pdDiag                                  html  
    pdFactor                                html  
    pdFactor.reStruct                       html  
    pdIdent                                 html  
    pdLogChol                               html  
    pdMat                                   html  
    pdMatrix                                html  
    pdMatrix.reStruct                       html  
    pdNatural                               html  
    pdSymm                                  html  
    phenoModel                              html  
    plot.ACF                                html  
    plot.Variogram                          html  
    plot.augPred                            html  
    plot.compareFits                        html  
    plot.gls                                html  
    plot.intervals.lmList                   html  
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    plot.lme                                html  
    plot.nffGroupedData                     html  
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    pooledSD                                html  
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    print.summary.pdMat                     html  
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    qqnorm.gls                              html  
    qqnorm.lme                              html  
    quinModel                               html  
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    reStruct                                html  
    recalc                                  html  
    recalc.corStruct                        html  
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    residuals.lme                           html  
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    solve.pdMat                             html  
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    summary.varFunc                         html  
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    varClasses                              html  
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    varExp                                  html  
    varFixed                                html  
    varFunc                                 html  
    varIdent                                html  
    varPower                                html  
    varWeights                              html  
    varWeights.glsStruct                    html  
    varWeights.lmeStruct                    html  
** building package indices
** testing if installed package can be loaded
* DONE (nlme)
Making 'packages.html' ... done
begin installing recommended package survival
* installing *source* package ‘survival’ ...
** package ‘survival’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/RtmpWKY6hw/R.INSTALL4ef36b78b94e/survival/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c agexact.c -o agexact.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c agfit4.c -o agfit4.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c agfit5.c -o agfit5.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c agmart.c -o agmart.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c agmart3.c -o agmart3.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c agscore2.c -o agscore2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c agscore3.c -o agscore3.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c agsurv4.c -o agsurv4.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c agsurv5.c -o agsurv5.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cdecomp.c -o cdecomp.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c chinv2.c -o chinv2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c chinv3.c -o chinv3.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cholesky2.c -o cholesky2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cholesky3.c -o cholesky3.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cholesky5.c -o cholesky5.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c chsolve2.c -o chsolve2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c chsolve3.c -o chsolve3.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c chsolve5.c -o chsolve5.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c collapse.c -o collapse.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c concordance1.c -o concordance1.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c concordance3.c -o concordance3.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c concordance5.c -o concordance5.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c cox_Rcallback.c -o cox_Rcallback.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxcount1.c -o coxcount1.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxdetail.c -o coxdetail.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxexact.c -o coxexact.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxfit5.c -o coxfit5.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxfit6.c -o coxfit6.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxmart.c -o coxmart.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxmart2.c -o coxmart2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxph_wtest.c -o coxph_wtest.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxsafe.c -o coxsafe.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxscho.c -o coxscho.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxscore2.c -o coxscore2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxsurv1.c -o coxsurv1.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxsurv2.c -o coxsurv2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxsurv3.c -o coxsurv3.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxsurv4.c -o coxsurv4.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dmatrix.c -o dmatrix.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c doloop.c -o doloop.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fastkm.c -o fastkm.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c finegray.c -o finegray.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gchol.c -o gchol.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c multicheck.c -o multicheck.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c norisk.c -o norisk.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pyears1.c -o pyears1.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pyears2.c -o pyears2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pyears3b.c -o pyears3b.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pystep.c -o pystep.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c residcsum.c -o residcsum.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survConcordance.c -o survConcordance.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survdiff2.c -o survdiff2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survfit4.c -o survfit4.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survfitaj.c -o survfitaj.o
survfitaj.c: In function ‘survfitaj’:
survfitaj.c:510:21: warning: ‘stdp’ may be used uninitialized [-Wmaybe-uninitialized]
  510 |                 stdp[j][i] = se1[j];
      |                 ~~~~^~~
survfitaj.c:96:14: note: ‘stdp’ was declared here
   96 |     double **stdp,  **stdc, **stda;
      |              ^~~~
survfitaj.c:517:32: warning: ‘stdc’ may be used uninitialized [-Wmaybe-uninitialized]
  517 |             if (sefit > 0) stdc[jk][i] = se2[jk];
      |                            ~~~~^~~~
survfitaj.c:96:23: note: ‘stdc’ was declared here
   96 |     double **stdp,  **stdc, **stda;
      |                       ^~~~
survfitaj.c:511:21: warning: ‘stda’ may be used uninitialized [-Wmaybe-uninitialized]
  511 |                 stda[j][i] = se3[j];
      |                 ~~~~^~~
survfitaj.c:96:31: note: ‘stda’ was declared here
   96 |     double **stdp,  **stdc, **stda;
      |                               ^~~~
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survfitkm.c -o survfitkm.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survfitresid.c -o survfitresid.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survpenal.c -o survpenal.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survreg6.c -o survreg6.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survreg7.c -o survreg7.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survregc1.c -o survregc1.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survregc2.c -o survregc2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c survsplit.c -o survsplit.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c tmerge.c -o tmerge.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c twoclust.c -o twoclust.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c zph1.c -o zph1.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c zph2.c -o zph2.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agscore3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o coxsurv3.o coxsurv4.o dmatrix.o doloop.o fastkm.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o residcsum.o survConcordance.o survdiff2.o survfit4.o survfitaj.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o twoclust.o zph1.o zph2.o -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpWKY6hw/R.INSTALL4ef36b78b94e/survival/src'
installing to /builddir/build/BUILD/R-4.4.3/library/survival/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘survival’
    finding HTML links ... done
    Surv                                    html  
    Surv2                                   html  
    Surv2data                               html  
    Survmethods                             html  
    aareg                                   html  
    aeqSurv                                 html  
    aggregate.survfit                       html  
    agreg.fit                               html  
    aml                                     html  
    anova.coxph                             html  
    attrassign                              html  
    basehaz                                 html  
    bladder                                 html  
    blogit                                  html  
    brier                                   html  
    cch                                     html  
    cgd                                     html  
    cgd0                                    html  
    cipoisson                               html  
    clogit                                  html  
    cluster                                 html  
    colon                                   html  
    concordance                             html  
    concordancefit                          html  
    cox.zph                                 html  
    coxph                                   html  
    coxph.control                           html  
    coxph.detail                            html  
    coxph.object                            html  
    coxph.wtest                             html  
    coxphms.object                          html  
    coxsurv.fit                             html  
    diabetic                                html  
    dsurvreg                                html  
    finegray                                html  
    flchain                                 html  
    frailty                                 html  
    gbsg                                    html  
    heart                                   html  
    hoel                                    html  
    is.ratetable                            html  
    kidney                                  html  
    levels.Surv                             html  
    lines.survfit                           html  
    logLik.coxph                            html  
    logan                                   html  
    lung                                    html  
    mgus                                    html  
    mgus2                                   html  
    model.frame.coxph                       html  
    model.matrix.coxph                      html  
    myeloid                                 html  
    myeloma                                 html  
    nafld                                   html  
    neardate                                html  
    nsk                                     html  
    nwtco                                   html  
    ovarian                                 html  
    pbc                                     html  
    pbcseq                                  html  
    plot.aareg                              html  
    plot.cox.zph                            html  
    plot.survfit                            html  
    predict.coxph                           html  
    predict.survreg                         html  
    print.aareg                             html  
    print.summary.coxph                     html  
    print.summary.survexp                   html  
    print.summary.survfit                   html  
    print.survfit                           html  
    pseudo                                  html  
    pspline                                 html  
    pyears                                  html  
    quantile.survfit                        html  
    ratetable                               html  
    ratetableDate                           html  
    rats                                    html  
    rats2                                   html  
    reliability                             html  
    residuals.coxph                         html  
    residuals.survfit                       html  
    residuals.survreg                       html  
    retinopathy                             html  
    rhDNase                                 html  
    ridge                                   html  
    rotterdam                               html  
    royston                                 html  
    rttright                                html  
    solder                                  html  
    stanford2                               html  
    statefig                                html  
    strata                                  html  
    summary.aareg                           html  
    summary.coxph                           html  
    summary.pyears                          html  
    summary.survexp                         html  
    summary.survfit                         html  
    survSplit                               html  
    survcheck                               html  
    survcondense                            html  
    survdiff                                html  
    survexp                                 html  
    survexp.fit                             html  
    survexp.object                          html  
    survexp.us                              html  
    survfit                                 html  
    survfit.coxph                           html  
    survfit.formula                         html  
    survfit.matrix                          html  
    survfit.object                          html  
    survfit0                                html  
    survfitcoxph.fit                        html  
    survival-deprecated                     html  
    survival-internal                       html  
    survobrien                              html  
    survreg                                 html  
    survreg.control                         html  
    survreg.distributions                   html  
    survreg.object                          html  
    survregDtest                            html  
    tcut                                    html  
    timeline                                html  
    tmerge                                  html  
    tobin                                   html  
    transplant                              html  
    udca                                    html  
    untangle.specials                       html  
    uspop2                                  html  
    vcov.coxph                              html  
    veteran                                 html  
    xtfrm.Surv                              html  
    yates                                   html  
    yates_setup                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (survival)
Making 'packages.html' ... done
begin installing recommended package boot
* installing *source* package ‘boot’ ...
** package ‘boot’ successfully unpacked and MD5 sums checked
** using non-staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘boot’
    finding HTML links ... done
    EEF.profile                             html  
    Imp.Estimates                           html  
    abc.ci                                  html  
    acme                                    html  
    aids                                    html  
    aircondit                               html  
    amis                                    html  
    aml                                     html  
    beaver                                  html  
    bigcity                                 html  
    boot-practicals                         html  
    boot                                    html  
    boot.array                              html  
    boot.ci                                 html  
    brambles                                html  
    breslow                                 html  
    calcium                                 html  
    cane                                    html  
    capability                              html  
    catsM                                   html  
    cav                                     html  
    cd4                                     html  
    cd4.nested                              html  
    censboot                                html  
    channing                                html  
    claridge                                html  
    cloth                                   html  
    co.transfer                             html  
    coal                                    html  
    control                                 html  
    corr                                    html  
    cum3                                    html  
    cv.glm                                  html  
    darwin                                  html  
    dogs                                    html  
    downs.bc                                html  
    ducks                                   html  
    empinf                                  html  
    envelope                                html  
    exp.tilt                                html  
    fir                                     html  
    freq.array                              html  
    frets                                   html  
    glm.diag                                html  
    glm.diag.plots                          html  
    gravity                                 html  
    hirose                                  html  
    imp.weights                             html  
    inv.logit                               html  
    islay                                   html  
    jack.after.boot                         html  
    k3.linear                               html  
    linear.approx                           html  
    lines.saddle.distn                      html  
    logit                                   html  
    manaus                                  html  
    melanoma                                html  
    motor                                   html  
    neuro                                   html  
    nitrofen                                html  
    nodal                                   html  
    norm.ci                                 html  
    nuclear                                 html  
    paulsen                                 html  
    plot.boot                               html  
    poisons                                 html  
    polar                                   html  
    print.boot                              html  
    print.bootci                            html  
    print.saddle.distn                      html  
    print.simplex                           html  
    remission                               html  
    saddle                                  html  
    saddle.distn                            html  
    saddle.distn.object                     html  
    salinity                                html  
    simplex                                 html  
    simplex.object                          html  
    smooth.f                                html  
    sunspot                                 html  
    survival                                html  
    tau                                     html  
    tilt.boot                               html  
    tsboot                                  html  
    tuna                                    html  
    urine                                   html  
    var.linear                              html  
    wool                                    html  
** building package indices
** testing if installed package can be loaded
* DONE (boot)
Making 'packages.html' ... done
begin installing recommended package cluster
* installing *source* package ‘cluster’ ...
** package ‘cluster’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/RtmphMR3Bz/R.INSTALL50209cc9458/cluster/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c clara.c -o clara.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c daisy.c -o daisy.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dysta.c -o dysta.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fanny.c -o fanny.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mona.c -o mona.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pam.c -o pam.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sildist.c -o sildist.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c spannel.c -o spannel.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c twins.c -o twins.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/RtmphMR3Bz/R.INSTALL50209cc9458/cluster/src'
installing to /builddir/build/BUILD/R-4.4.3/library/cluster/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cluster’
    finding HTML links ... done
    agnes                                   html  
    agnes.object                            html  
    agriculture                             html  
    animals                                 html  
    bannerplot                              html  
    chorSub                                 html  
    clara                                   html  
    clara.object                            html  
    clusGap                                 html  
    clusplot.default                        html  
    clusplot.partition                      html  
    cluster-internal                        html  
    coef.hclust                             html  
    daisy                                   html  
    diana                                   html  
    dissimilarity.object                    html  
    ellipsoidhull                           html  
    fanny                                   html  
    fanny.object                            html  
    flower                                  html  
    lower.to.upper.tri.inds                 html  
    medoids                                 html  
    mona                                    html  
    mona.object                             html  
    pam                                     html  
    pam.object                              html  
    partition.object                        html  
    plantTraits                             html  
    plot.agnes                              html  
    plot.diana                              html  
    plot.mona                               html  
    plot.partition                          html  
    pltree                                  html  
    pluton                                  html  
    predict.ellipsoid                       html  
    print.agnes                             html  
    print.clara                             html  
    print.diana                             html  
    print.dissimilarity                     html  
    print.fanny                             html  
    print.mona                              html  
    print.pam                               html  
    ruspini                                 html  
    silhouette                              html  
    sizeDiss                                html  
    summary.agnes                           html  
    summary.clara                           html  
    summary.diana                           html  
    summary.mona                            html  
    summary.pam                             html  
    twins.object                            html  
    volume.ellipsoid                        html  
    votes.repub                             html  
    xclara                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (cluster)
Making 'packages.html' ... done
begin installing recommended package codetools
* installing *source* package ‘codetools’ ...
** package ‘codetools’ successfully unpacked and MD5 sums checked
** using non-staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘codetools’
    finding HTML links ... done
    checkUsage                              html  
    codetools                               html  
    findGlobals                             html  
    showTree                                html  
** building package indices
** testing if installed package can be loaded
* DONE (codetools)
Making 'packages.html' ... done
begin installing recommended package foreign
* installing *source* package ‘foreign’ ...
** package ‘foreign’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/Rtmph92Cui/R.INSTALL509468aaa08e/foreign/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c R_systat.c -o R_systat.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c Rdbfread.c -o Rdbfread.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c Rdbfwrite.c -o Rdbfwrite.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c SASxport.c -o SASxport.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c avl.c -o avl.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c dbfopen.c -o dbfopen.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c file-handle.c -o file-handle.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c format.c -o format.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c minitab.c -o minitab.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pfm-read.c -o pfm-read.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sfm-read.c -o sfm-read.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c spss.c -o spss.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c stataread.c -o stataread.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/Rtmph92Cui/R.INSTALL509468aaa08e/foreign/src'
installing to /builddir/build/BUILD/R-4.4.3/library/foreign/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘foreign’
    finding HTML links ... done
    lookup.xport                            html  
    read.S                                  html  
    read.arff                               html  
    read.dbf                                html  
    read.dta                                html  
    read.epiinfo                            html  
    read.mtp                                html  
    read.octave                             html  
    read.spss                               html  
    read.ssd                                html  
    read.systat                             html  
    read.xport                              html  
    write.arff                              html  
    write.dbf                               html  
    write.dta                               html  
    write.foreign                           html  
** building package indices
** testing if installed package can be loaded
* DONE (foreign)
Making 'packages.html' ... done
begin installing recommended package KernSmooth
* installing *source* package ‘KernSmooth’ ...
** package ‘KernSmooth’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/RtmpTtkAiB/R.INSTALL50f97f804b11/KernSmooth/src'
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c blkest.f -o blkest.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c cp.f -o cp.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dgedi.f -o dgedi.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dgefa.f -o dgefa.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c dgesl.f -o dgesl.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c linbin.f -o linbin.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c linbin2D.f -o linbin2D.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c locpoly.f -o locpoly.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c rlbin.f -o rlbin.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c sdiag.f -o sdiag.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules   -c sstdiag.f -o sstdiag.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lflexiblas -lgfortran -lm -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpTtkAiB/R.INSTALL50f97f804b11/KernSmooth/src'
installing to /builddir/build/BUILD/R-4.4.3/library/KernSmooth/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘KernSmooth’
    finding HTML links ... done
    bkde                                    html  
    bkde2D                                  html  
    bkfe                                    html  
    dpih                                    html  
    dpik                                    html  
    dpill                                   html  
    locpoly                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (KernSmooth)
Making 'packages.html' ... done
begin installing recommended package rpart
* installing *source* package ‘rpart’ ...
** package ‘rpart’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/Rtmpw8JtWD/R.INSTALL5153f344a6d/rpart/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c anova.c -o anova.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c anovapred.c -o anovapred.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c branch.c -o branch.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c bsplit.c -o bsplit.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c choose_surg.c -o choose_surg.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c fix_cp.c -o fix_cp.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c free_tree.c -o free_tree.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gini.c -o gini.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c graycode.c -o graycode.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c insert_split.c -o insert_split.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c make_cp_list.c -o make_cp_list.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c make_cp_table.c -o make_cp_table.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mysort.c -o mysort.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c nodesplit.c -o nodesplit.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c partition.c -o partition.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c poisson.c -o poisson.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pred_rpart.c -o pred_rpart.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c print_tree.c -o print_tree.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rpart.c -o rpart.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rpart_callback.c -o rpart_callback.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rpartexp.c -o rpartexp.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rpartexp2.c -o rpartexp2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rpcountup.c -o rpcountup.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rpmatrix.c -o rpmatrix.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rundown.c -o rundown.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c rundown2.c -o rundown2.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c surrogate.c -o surrogate.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c usersplit.c -o usersplit.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c xpred.c -o xpred.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c xval.c -o xval.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/Rtmpw8JtWD/R.INSTALL5153f344a6d/rpart/src'
installing to /builddir/build/BUILD/R-4.4.3/library/rpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘rpart’
    finding HTML links ... done
    car.test.frame                          html  
    car90                                   html  
    cu.summary                              html  
    kyphosis                                html  
    labels.rpart                            html  
    meanvar.rpart                           html  
    na.rpart                                html  
    path.rpart                              html  
    plot.rpart                              html  
    plotcp                                  html  
    post.rpart                              html  
    predict.rpart                           html  
    print.rpart                             html  
    printcp                                 html  
    prune.rpart                             html  
    residuals.rpart                         html  
    rpart-internal                          html  
    rpart                                   html  
    rpart.control                           html  
    rpart.exp                               html  
    rpart.object                            html  
    rsq.rpart                               html  
    snip.rpart                              html  
    solder.balance                          html  
    stagec                                  html  
    summary.rpart                           html  
    text.rpart                              html  
    xpred.rpart                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rpart)
Making 'packages.html' ... done
begin installing recommended package class
* installing *source* package ‘class’ ...
** package ‘class’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/RtmpxVDEap/R.INSTALL51e5531659a7/class/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c class.c -o class.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o class.so class.o -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpxVDEap/R.INSTALL51e5531659a7/class/src'
installing to /builddir/build/BUILD/R-4.4.3/library/class/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘class’
    finding HTML links ... done
    SOM                                     html  
    batchSOM                                html  
    condense                                html  
    knn                                     html  
    knn.cv                                  html  
    knn1                                    html  
    lvq1                                    html  
    lvq2                                    html  
    lvq3                                    html  
    lvqinit                                 html  
    lvqtest                                 html  
    multiedit                               html  
    olvq1                                   html  
    reduce.nn                               html  
    somgrid                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (class)
Making 'packages.html' ... done
begin installing recommended package nnet
* installing *source* package ‘nnet’ ...
** package ‘nnet’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/RtmprWF2Rr/R.INSTALL521d225452f0/nnet/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c nnet.c -o nnet.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o nnet.so nnet.o -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/RtmprWF2Rr/R.INSTALL521d225452f0/nnet/src'
installing to /builddir/build/BUILD/R-4.4.3/library/nnet/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘nnet’
    finding HTML links ... done
    class.ind                               html  
    multinom                                html  
    nnet.Hess                               html  
    nnet                                    html  
    predict.nnet                            html  
    which.is.max                            html  
** building package indices
** testing if installed package can be loaded
* DONE (nnet)
Making 'packages.html' ... done
begin installing recommended package spatial
* installing *source* package ‘spatial’ ...
** package ‘spatial’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/Rtmpz3927S/R.INSTALL52577069a4d5/spatial/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c krc.c -o krc.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c pps.c -o pps.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/Rtmpz3927S/R.INSTALL52577069a4d5/spatial/src'
installing to /builddir/build/BUILD/R-4.4.3/library/spatial/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘spatial’
    finding HTML links ... done
    Kaver                                   html  
    Kenvl                                   html  
    Kfn                                     html  
    Psim                                    html  
    SSI                                     html  
    Strauss                                 html  
    anova.trls                              html  
    correlogram                             html  
    expcov                                  html  
    ppgetregion                             html  
    ppinit                                  html  
    pplik                                   html  
    ppregion                                html  
    predict.trls                            html  
    prmat                                   html  
    semat                                   html  
    surf.gls                                html  
    surf.ls                                 html  
    trls.influence                          html  
    trmat                                   html  
    variogram                               html  
** building package indices
** testing if installed package can be loaded
* DONE (spatial)
Making 'packages.html' ... done
begin installing recommended package mgcv
* installing *source* package ‘mgcv’ ...
** package ‘mgcv’ successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[3]: Entering directory '/tmp/Rtmp0WyokW/R.INSTALL5295b29d14c/mgcv/src'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c coxph.c -o coxph.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c davies.c -o davies.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c discrete.c -o discrete.o
discrete.c: In function ‘CXWyd’:
discrete.c:700:62: warning: unused variable ‘nrs’ [-Wunused-variable]
  700 |   int n,*k,*ks,*m,*p,*ts,*dt,*qc,*nthreads,*cs,*rs,nx,nt,ncs,nrs,*ar_stop,*ar_row,*cy;
      |                                                              ^~~
discrete.c:700:49: warning: unused variable ‘rs’ [-Wunused-variable]
  700 |   int n,*k,*ks,*m,*p,*ts,*dt,*qc,*nthreads,*cs,*rs,nx,nt,ncs,nrs,*ar_stop,*ar_row,*cy;
      |                                                 ^~
discrete.c:700:35: warning: unused variable ‘nthreads’ [-Wunused-variable]
  700 |   int n,*k,*ks,*m,*p,*ts,*dt,*qc,*nthreads,*cs,*rs,nx,nt,ncs,nrs,*ar_stop,*ar_row,*cy;
      |                                   ^~~~~~~~
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c gdi.c -o gdi.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c magic.c -o magic.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mat.c -o mat.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c matrix.c -o matrix.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mgcv.c -o mgcv.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c misc.c -o misc.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c mvn.c -o mvn.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c ncv.c -o ncv.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c qp.c -o qp.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c soap.c -o soap.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sparse-smooth.c -o sparse-smooth.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c sparse.c -o sparse.o
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c tprs.c -o tprs.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o ncv.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -lflexiblas -lgfortran -lm -fopenmp -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/Rtmp0WyokW/R.INSTALL5295b29d14c/mgcv/src'
installing to /builddir/build/BUILD/R-4.4.3/library/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘mgcv’
    finding HTML links ... done
    Beta                                    html  
    FFdes                                   html  
    NCV                                     html  
    Predict.matrix                          html  
    Predict.matrix.cr.smooth                html  
    Predict.matrix.soap.film                html  
    Rrank                                   html  
    Sl.initial.repara                       html  
    Sl.repara                               html  
    Sl.setup                                html  
    Tweedie                                 html  
    XWXd                                    html  
    anova.gam                               html  
    bam                                     html  
    bam.update                              html  
    bandchol                                html  
    blas.thread.test                        html  
    bug.reports.mgcv                        html  
    cSplineDes                              html  
    chol.down                               html  
    choose.k                                html  
    cnorm                                   html  
    columb                                  html  
    concurvity                              html  
    coxph                                   html  
    coxpht                                  html  
    dDeta                                   html  
    dpnorm                                  html  
    exclude.too.far                         html  
    extract.lme.cov                         html  
    factor.smooth                           html  
    family.mgcv                             html  
    fix.family.link                         html  
    fixDependence                           html  
    formXtViX                               html  
    formula.gam                             html  
    fs.test                                 html  
    full.score                              html  
    gam                                     html  
    gam.check                               html  
    gam.control                             html  
    gam.convergence                         html  
    gam.fit                                 html  
    gam.fit3                                html  
    gam.fit5.post.proc                      html  
    gam.mh                                  html  
    gam.models                              html  
    gam.outer                               html  
    gam.reparam                             html  
    gam.scale                               html  
    gam.selection                           html  
    gam.side                                html  
    gam.vcomp                               html  
    gam2objective                           html  
    gamObject                               html  
    gamSim                                  html  
    gamlss.etamu                            html  
    gamlss.gH                               html  
    gamm                                    html  
    gammals                                 html  
    gaulss                                  html  
    get.var                                 html  
    gevlss                                  html  
    gfam                                    html  
    ginla                                   html  
    gumbls                                  html  
    identifiability                         html  
    in.out                                  html  
    inSide                                  html  
    influence.gam                           html  
    initial.sp                              html  
    interpret.gam                           html  
    jagam                                   html  
    k.check                                 html  
    ldTweedie                               html  
    ldetS                                   html  
    linear.functional.terms                 html  
    logLik.gam                              html  
    ls.size                                 html  
    magic                                   html  
    magic.post.proc                         html  
    mgcv-FAQ                                html  
    mgcv-package                            html  
    mgcv-parallel                           html  
    mini.roots                              html  
    missing.data                            html  
    model.matrix.gam                        html  
    mono.con                                html  
    mroot                                   html  
    multinom                                html  
    mvn                                     html  
    negbin                                  html  
    new.name                                html  
    notExp                                  html  
    notExp2                                 html  
    null.space.dimension                    html  
    ocat                                    html  
    one.se.rule                             html  
    pcls                                    html  
    pdIdnot                                 html  
    pdTens                                  html  
    pen.edf                                 html  
    place.knots                             html  
    plot.gam                                html  
    polys.plot                              html  
    predict.bam                             html  
    predict.gam                             html  
    print.gam                               html  
    psum.chisq                              html  
    qq.gam                                  html  
    rTweedie                                html  
    random.effects                          html  
    residuals.gam                           html  
    rig                                     html  
    rmvn                                    html  
    s                                       html  
    scat                                    html  
    sdiag                                   html  
    shash                                   html  
    single.index                            html  
    slanczos                                html  
    smooth.construct                        html  
    smooth.construct.ad.smooth.spec         html  
    smooth.construct.bs.smooth.spec         html  
    smooth.construct.cr.smooth.spec         html  
    smooth.construct.ds.smooth.spec         html  
    smooth.construct.fs.smooth.spec         html  
    smooth.construct.gp.smooth.spec         html  
    smooth.construct.mrf.smooth.spec        html  
    smooth.construct.ps.smooth.spec         html  
    smooth.construct.re.smooth.spec         html  
    smooth.construct.so.smooth.spec         html  
    smooth.construct.sos.smooth.spec        html  
    smooth.construct.sz.smooth.spec         html  
    smooth.construct.t2.smooth.spec         html  
    smooth.construct.tensor.smooth.spec     html  
    smooth.construct.tp.smooth.spec         html  
    smooth.info                             html  
    smooth.terms                            html  
    smooth2random                           html  
    smoothCon                               html  
    sp.vcov                                 html  
    spasm.construct                         html  
    step.gam                                html  
    summary.gam                             html  
    t2                                      html  
    te                                      html  
    tensor.prod.model.matrix                html  
    totalPenaltySpace                       html  
    trichol                                 html  
    trind.generator                         html  
    twlss                                   html  
    uniquecombs                             html  
    vcov.gam                                html  
    vis.gam                                 html  
    ziP                                     html  
    ziplss                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (mgcv)
Making 'packages.html' ... done
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/Recommended'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library/Recommended'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library'
building/updating vignettes for package 'grid' ...
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
building/updating vignettes for package 'stats' ...
processing 'reshape.Rnw'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3'
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 21.0.6
Java home path   : /usr/lib/jvm/jre
Java compiler    : /usr/bin/javac
Java headers gen.: 
Java archive tool: /usr/bin/jar
trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’
make[2]: Entering directory '/tmp/Rjavareconf.O7K2yu'
gcc -I"/builddir/build/BUILD/R-4.4.3/include" -DNDEBUG -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -c conftest.c -o conftest.o
gcc -shared -L/builddir/build/BUILD/R-4.4.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o conftest.so conftest.o -L/usr/lib/jvm/jre/lib/server -ljvm -L/builddir/build/BUILD/R-4.4.3/lib -lR
make[2]: Leaving directory '/tmp/Rjavareconf.O7K2yu'
JAVA_HOME        : /usr/lib/jvm/jre
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /builddir/build/BUILD/R-4.4.3
Done.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3'
+ cd src/nmath/standalone
+ make
(cd ../../include; make Rmath.h)
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/include'
make[1]: 'Rmath.h' is up to date.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/include'
Copying source files
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/nmath/standalone'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c mlutils.c -o mlutils.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c d1mach.c -o d1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c i1mach.c -o i1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c fmax2.c -o fmax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c fmin2.c -o fmin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c fprec.c -o fprec.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c fround.c -o fround.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c ftrunc.c -o ftrunc.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c sign.c -o sign.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c fsign.c -o fsign.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c imax2.c -o imax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c imin2.c -o imin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c chebyshev.c -o chebyshev.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c log1p.c -o log1p.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c lgammacor.c -o lgammacor.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c gammalims.c -o gammalims.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c stirlerr.c -o stirlerr.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c bd0.c -o bd0.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c gamma.c -o gamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c lgamma.c -o lgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c beta.c -o beta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c lbeta.c -o lbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c polygamma.c -o polygamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c cospi.c -o cospi.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c bessel_i.c -o bessel_i.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c bessel_j.c -o bessel_j.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c bessel_k.c -o bessel_k.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c bessel_y.c -o bessel_y.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c choose.c -o choose.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c snorm.c -o snorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c sexp.c -o sexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dgamma.c -o dgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pgamma.c -o pgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qgamma.c -o qgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rgamma.c -o rgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dbeta.c -o dbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pbeta.c -o pbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qbeta.c -o qbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rbeta.c -o rbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dunif.c -o dunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c punif.c -o punif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qunif.c -o qunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c runif.c -o runif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnorm.c -o dnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnorm.c -o pnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnorm.c -o qnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rnorm.c -o rnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dlnorm.c -o dlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c plnorm.c -o plnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qlnorm.c -o qlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rlnorm.c -o rlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c df.c -o df.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pf.c -o pf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qf.c -o qf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rf.c -o rf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnf.c -o dnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dt.c -o dt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pt.c -o pt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qt.c -o qt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rt.c -o rt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnt.c -o dnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dchisq.c -o dchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pchisq.c -o pchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qchisq.c -o qchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rchisq.c -o rchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rnchisq.c -o rnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dbinom.c -o dbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pbinom.c -o pbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qbinom.c -o qbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rbinom.c -o rbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rmultinom.c -o rmultinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dcauchy.c -o dcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pcauchy.c -o pcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qcauchy.c -o qcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rcauchy.c -o rcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dexp.c -o dexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pexp.c -o pexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qexp.c -o qexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rexp.c -o rexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dgeom.c -o dgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pgeom.c -o pgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qgeom.c -o qgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rgeom.c -o rgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dhyper.c -o dhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c phyper.c -o phyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qhyper.c -o qhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rhyper.c -o rhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnbinom.c -o dnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnbinom.c -o pnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnbinom.c -o qnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rnbinom.c -o rnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dpois.c -o dpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c ppois.c -o ppois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qpois.c -o qpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rpois.c -o rpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dweibull.c -o dweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pweibull.c -o pweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qweibull.c -o qweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rweibull.c -o rweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dlogis.c -o dlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c plogis.c -o plogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qlogis.c -o qlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rlogis.c -o rlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnchisq.c -o dnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnchisq.c -o pnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnchisq.c -o qnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnbeta.c -o dnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnbeta.c -o pnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnbeta.c -o qnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnf.c -o pnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnt.c -o pnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnf.c -o qnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnt.c -o qnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c ptukey.c -o ptukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qtukey.c -o qtukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c toms708.c -o toms708.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c wilcox.c -o wilcox.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c signrank.c -o signrank.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c std_unif.c -o std_unif.o
ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/nmath/standalone'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c mlutils.c -o mlutils.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c d1mach.c -o d1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c i1mach.c -o i1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c fmax2.c -o fmax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c fmin2.c -o fmin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c fprec.c -o fprec.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c fround.c -o fround.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c ftrunc.c -o ftrunc.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c sign.c -o sign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c fsign.c -o fsign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c imax2.c -o imax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c imin2.c -o imin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c chebyshev.c -o chebyshev.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c log1p.c -o log1p.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c lgammacor.c -o lgammacor.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c gammalims.c -o gammalims.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c stirlerr.c -o stirlerr.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c bd0.c -o bd0.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c gamma.c -o gamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c lgamma.c -o lgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c gamma_cody.c -o gamma_cody.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c beta.c -o beta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c lbeta.c -o lbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c polygamma.c -o polygamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c cospi.c -o cospi.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c bessel_i.c -o bessel_i.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c bessel_j.c -o bessel_j.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c bessel_k.c -o bessel_k.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c bessel_y.c -o bessel_y.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c choose.c -o choose.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c snorm.c -o snorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c sexp.c -o sexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dgamma.c -o dgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pgamma.c -o pgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qgamma.c -o qgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rgamma.c -o rgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dbeta.c -o dbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pbeta.c -o pbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qbeta.c -o qbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rbeta.c -o rbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dunif.c -o dunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c punif.c -o punif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qunif.c -o qunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c runif.c -o runif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnorm.c -o dnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnorm.c -o pnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnorm.c -o qnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rnorm.c -o rnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dlnorm.c -o dlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c plnorm.c -o plnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qlnorm.c -o qlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rlnorm.c -o rlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c df.c -o df.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pf.c -o pf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qf.c -o qf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rf.c -o rf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnf.c -o dnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dt.c -o dt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pt.c -o pt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qt.c -o qt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rt.c -o rt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnt.c -o dnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dchisq.c -o dchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pchisq.c -o pchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qchisq.c -o qchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rchisq.c -o rchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rnchisq.c -o rnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dbinom.c -o dbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pbinom.c -o pbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qbinom.c -o qbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rbinom.c -o rbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rmultinom.c -o rmultinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dcauchy.c -o dcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pcauchy.c -o pcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qcauchy.c -o qcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rcauchy.c -o rcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dexp.c -o dexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pexp.c -o pexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qexp.c -o qexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rexp.c -o rexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dgeom.c -o dgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pgeom.c -o pgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qgeom.c -o qgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rgeom.c -o rgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dhyper.c -o dhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c phyper.c -o phyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qhyper.c -o qhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rhyper.c -o rhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnbinom.c -o dnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnbinom.c -o pnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnbinom.c -o qnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnbinom_mu.c -o qnbinom_mu.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rnbinom.c -o rnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dpois.c -o dpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c ppois.c -o ppois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qpois.c -o qpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rpois.c -o rpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dweibull.c -o dweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pweibull.c -o pweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qweibull.c -o qweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rweibull.c -o rweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dlogis.c -o dlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c plogis.c -o plogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qlogis.c -o qlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c rlogis.c -o rlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnchisq.c -o dnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnchisq.c -o pnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnchisq.c -o qnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c dnbeta.c -o dnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnbeta.c -o pnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnbeta.c -o qnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnf.c -o pnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c pnt.c -o pnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnf.c -o qnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qnt.c -o qnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c ptukey.c -o ptukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c qtukey.c -o qtukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c toms708.c -o toms708.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c wilcox.c -o wilcox.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c signrank.c -o signrank.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection    -c std_unif.c -o std_unif.lo
gcc -shared -fopenmp -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   -o libRmath.so  mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
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Chapter 1.
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[]\T1/ptm/m/n/10 the small-est pos-i-tive floating-point num-ber []\T1/pcr/m/n/
10 x []\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 + x != 1[]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 It equals []\T1/pcr/m/n/10 double.base ^ ulp.digits []\T1/ptm/m/
n/10 if ei-ther []\T1/pcr/m/n/10 double.base []\T1/ptm/m/n/10 is
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\T1/ptm/m/n/10 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0; oth
-er-wise, it is []\T1/pcr/m/n/10 (double.base ^
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/pcr/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It
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\T1/ptm/m/n/10 equals []\T1/pcr/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/pcr/m/n/10 double.base
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[]\T1/ptm/m/n/10 is 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/pcr/m/n/10 (double.base
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\T1/pcr/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/p
cr/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
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[]\T1/ptm/m/n/10 the num-ber of \T1/ptm/m/it/10 bytes \T1/ptm/m/n/10 in the C [
]\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 type: a 64-bit []\T1/pcr/m/n/10 time_t 
[]\T1/ptm/m/n/10 (value
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[]\T1/pcr/m/n/10 8[]\T1/ptm/m/n/10 ) is much pre-ferred these days. Note that t
his is the type used by
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[]\T1/ptm/m/n/10 introduced in \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.0.0. When [][]
[]\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 is
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[]\T1/pcr/m/n/10 *.exponent[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 *.min.exp[]\T1/p
tm/m/n/10 , and []\T1/pcr/m/n/10 *.max.exp[]\T1/ptm/m/n/10 , com-puted en-tirel
y anal-o-gously to their
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[]\T1/ptm/m/n/10 Note that it is le-gal for a plat-form to have a `[]\T1/pcr/m/
n/10 long double[]\T1/ptm/m/n/10 ' C type which is
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\T1/ptm/m/n/10 iden-ti-cal to the `[]\T1/pcr/m/n/10 double[]\T1/ptm/m/n/10 ' ty
pe --- this hap-pens on ARM CPUs. In that case
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[][][]\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 will be
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[][][]\T1/pcr/m/n/10 R.version[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 
Sys.info[][][] []\T1/ptm/m/n/10 give more de-tails about the OS. In par-tic-u-l
ar,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, v
alue = TRUE)[] 
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iveErr = FALSE)[] 
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 []\T1/pcr/m/n/9 all.equal(tan(d45), one, tolerance = 0, scale = 1+(-2:2)/1e9) 
# "absolute"[] 
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 []\T1/pcr/m/n/9 mtext(paste("mean(all.equal(x1, x2*(1 + eps_k))) {100 x} Mean 
rel.diff.=",[] 
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 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE)# "target is 
bar, current is numeric"[] 
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 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE, check.class 
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 []\T1/pcr/m/n/10 all.names(expr, functions = TRUE, max.names = -1L, unique = F
ALSE) 
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[]\T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion, where \T1/phv/m/n/10 R \T1/p
tm/m/n/10 uses ``floored'' in-te-ger di-vi-sion, i.e., []\T1/pcr/m/n/10 q <- x 
%/% y :=
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\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle
 . com / cd / E19957-[]01 / 806-[]3568 / ncg _
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[]\T1/ptm/m/n/10 logical or in-te-ger; in-di-cat-ing if col-umn names with more
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 []\T1/pcr/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[]\T1/ptm/m/n/10 If [][][]\T1/pcr/m/n/10 is.object[][][](x) []\T1/ptm/m/n/10 is
 true and it has a [][][]\T1/pcr/m/n/10 class[][][] []\T1/ptm/m/n/10 for which 
an
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 []\T1/pcr/m/n/9 (now <- as.POSIXlt(Sys.time())) # the current datetime, as cla
ss "POSIXlt"[] 
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[]\T1/ptm/m/n/10 There are no re-stric-tions on the name given as []\T1/pcr/m/n
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[]\T1/pcr/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/pcr/m/n/10 balancePOSIXlt(x,
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 []\T1/pcr/m/n/9 for(i in seq_along(L)) L[[i]] <- call(E[[i]]) # instead of lap
ply(E, call) ..[] 
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 []\T1/pcr/m/n/9 list_ <- function (...) \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 names<-
\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 (list(...), vapply(sys.call()[-1L], as.character
, ""))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the name of a C func-tion, or an 
ob-ject
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\T1/ptm/m/n/10 of class []\T1/pcr/m/n/10 "[][]NativeSymbolInfo[][][]"[]\T1/ptm/
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r
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[]\T1/ptm/m/n/10 is ICU avail-able for col-la-tion? See the help on [][]Com-par
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[]\T1/ptm/m/n/10 (generalized) vec-tors or ma-tri-ces. These can be given as na
med ar-gu-
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[]\T1/ptm/m/n/10 (only for data frame method:) log-i-cal in-di-cat-ing if uniqu
e and valid
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 []\T1/pcr/m/n/9 rbind(1:4, c = 2, "a++" = 10, dd, deparse.level = 1) # 3 rowna
mes (default)[] 
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 []\T1/pcr/m/n/9 as.character(list(A = "Abc", xy = c("x", "y"))) # "Abc"  "c(\"
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
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[]\T1/ptm/m/n/10 When a generic func-tion []\T1/pcr/m/n/10 fun []\T1/ptm/m/n/10
 is ap-plied to an ob-ject with class at-tribute []\T1/pcr/m/n/10 c("first",
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[]\T1/ptm/m/n/10 Collation of char-ac-ter strings is a com-plex topic. For an i
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 []\T1/pcr/m/n/9 stopifnot(identical(as.complex(NA_real_), NA_real_ + 0i)) # ha
s always been true[] 
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 []\T1/pcr/m/n/9 NAs <- vapply(list(NA, NA_integer_, NA_real_, NA_character_, N
A_complex_),[] 
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 []\T1/pcr/m/n/9 ## The exact result of this *depends* on the platform, compile
r, math-library:[] 
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 []\T1/pcr/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
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[]\T1/ptm/m/n/10 User in-ter-rupts sig-nal a con-di-tion of class []\T1/pcr/m/n
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[]\T1/ptm/m/n/10 Restarts are used for es-tab-lish-ing re-cov-ery pro-to-cols. 
They can be es-tab-lished us-ing
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[]\T1/ptm/m/n/10 One ad-di-tional field that can be spec-i-fied for a restart i
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[]\T1/ptm/m/n/10 character string, par-tially matched to []\T1/pcr/m/n/10 c("de
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[]\T1/pcr/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 unz[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 socketConnection[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 It may be pos-si-ble to de-duce the cur-rent na-tive en-cod-in
g from
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[]\T1/pcr/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/pcr/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/pcr/m/n/10 "r" []\T1/ptm/m/n
/10 only. This
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\T1/ptm/m/n/10 reads the X11 pri-mary se-lec-tion (see [][]$\T1/pcr/m/n/10 http
s : / / specifications . freedesktop .
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[]\T1/pcr/m/n/10 "X11_primary" []\T1/ptm/m/n/10 and the sec-ondary se-lec-tion 
as []\T1/pcr/m/n/10 "X11_secondary"[]\T1/ptm/m/n/10 . On most sys-
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 []\T1/pcr/m/n/9 A <- read.table(con <- file("students", encoding = "UCS-2LE"))
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[]\T1/ptm/m/n/10 The cur-rent eval-u-a-tion depth (in-clud-ing two calls for th
e call to
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 []\T1/pcr/m/n/9 tm <- seq(as.POSIXct("2012-06-01 06:00"), by = "6 hours", leng
th.out = 24)[] 
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[]\T1/pcr/m/n/10 data.frame []\T1/ptm/m/n/10 con-verts each of its ar-gu-ments 
to a data frame by call-ing
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[][][]\T1/pcr/m/n/10 as.data.frame[][][](optional = TRUE)[]\T1/ptm/m/n/10 . As 
that is a generic func-tion, meth-ods can be
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 []                 \T1/pcr/m/n/9 c = seq(as.Date("2004-01-01"), by = "week", l
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\T1/pcr/m/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") []\T1/ptm/m
/n/10 may give []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 , and
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[]\T1/pcr/m/n/10 .Defunct []\T1/ptm/m/n/10 is called from de-funct func-tions. 
Func-tions should be listed in
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 []\T1/pcr/m/n/9 ### Promises in an environment [for advanced users]:  --------
-------------[] 
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 []\T1/pcr/m/n/9 e <- (function(x, y = 1, z) environment())(cos, "y", {cat(" HO
!\n"); pi+2})[] 
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 []        \T1/pcr/m/n/10 backtick = mode(expr) %in% c("call", "expression", "(
", "function"),[] 
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 []        \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "sh
owAttributes"),[] 
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[]\T1/pcr/m/n/10 ..deparseOpts []\T1/ptm/m/n/10 is the [][][]\T1/pcr/m/n/10 cha
racter[][][] []\T1/ptm/m/n/10 vec-tor of pos-si-ble de-pars-ing op-tions used b
y
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[]\T1/ptm/m/n/10 Surround un-eval-u-ated ex-pres-sions, but not [][][]\T1/pcr/m
/n/10 formula[][][][]\T1/ptm/m/n/10 s, with
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[]\T1/ptm/m/n/10 a nu-meric value. The mod-u-lus (ab-so-lute value) of the de-t
er-mi-nant if
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 []    \T1/pcr/m/n/10 z <- as.POSIXct(c("2016-12-31 23:59:59", "2017-01-01 00:0
0:01"))[] 
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[]\T1/pcr/m/n/10 provideDimnames(x) []\T1/ptm/m/n/10 pro-vides []\T1/pcr/m/n/10
 dimnames []\T1/ptm/m/n/10 where ``miss-ing'', such that its re-sult has
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 []\T1/pcr/m/n/9 strd(provideDimnames(N, base= list(letters[-(1:9)], tail(LETTE
RS)))) # recycling[] 
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 []\T1/pcr/m/n/9 strd(provideDimnames(A, base= list(c("AA","BB")))) # recycling
 on both levels[] 
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[]\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of []\
T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . Cur-rently this is only used by
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 []\T1/pcr/m/n/9 ## From R 4.1.0 to 4.1.2, ...names() sometimes did not match n
ames(list(...));[] 
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 []\T1/pcr/m/n/9 chk.n2 <- function(...) stopifnot(identical(print(...names()),
 names(list(...))))[] 
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ 754-[]19
85$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
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\T1/pcr/m/n/10 org / wiki / IEEE _ 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr
/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _
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\T1/pcr/m/n/10 754-[]2019$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
pcr/m/n/10 https :
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 []     \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "showA
ttributes"))[] 
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 []\T1/pcr/m/n/9 ## Write an ASCII version of the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 base\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 function mean() to our temp file, ..[] 
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 []\T1/pcr/m/n/9 drop(1:3 %*% 2:4)  # scalar product - w/o drop(.), would retur
n 1x1 matrix[] 
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 []\T1/pcr/m/n/9 aq <- transform(airquality, Month = factor(Month, labels = mon
th.abb[5:9])) 
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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
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[]\T1/pcr/m/n/10 duplicated(x, fromLast = TRUE) []\T1/ptm/m/n/10 is equiv-a-len
t to but faster than
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[]\T1/ptm/m/n/10 Do not use []\T1/pcr/m/n/10 dyn.unload []\T1/ptm/m/n/10 on a D
LL loaded by [][][]\T1/pcr/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 : use
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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 []\T1/pcr/m/n/9 Encoding(x.) # "unknown" (UTF-8 loc.) | "latin1" (8859-1/CP-12
52 loc.) | ....[] 
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[]\T1/ptm/m/n/10 The path to the de-fault browser. Used to set the de-fault val
ue of
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[]\T1/ptm/m/n/10 Optional. The path to Ghostscript, used by [][][]\T1/pcr/m/n/1
0 dev2bitmap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bitmap[][][] []\T1/pt
m/m/n/10 and
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[]\T1/ptm/m/n/10 The path to HTML []\T1/pcr/m/n/10 tidy[]\T1/ptm/m/n/10 . Used 
by []\T1/pcr/m/n/10 R CMD check []\T1/ptm/m/n/10 if
Underfull \hbox (badness 10000) in paragraph at lines 12900--12902
[]\T1/ptm/m/n/10 (and more). Op-tional. Set-tings for
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[]\T1/ptm/m/n/10 a frame in the call-ing list. Equiv-a-lent to giv-ing []\T1/pc
r/m/n/10 where []\T1/ptm/m/n/10 as
Underfull \hbox (badness 5970) in paragraph at lines 13193--13195
[]\T1/pcr/m/n/10 get0(): []\T1/ptm/m/n/10 The object---as from [][][]\T1/pcr/m/
n/10 get[][][](x, *)[]\T1/ptm/m/n/10 --- if []\T1/pcr/m/n/10 exists(x, *) []\T1
/ptm/m/n/10 is true, oth-er-wise
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 []\T1/pcr/m/n/9 ## "avector" := vector that keeps attributes.   Could provide 
a constructor[] 
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/pcr
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/pcr/m/n/10 fsep =
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[]\T1/ptm/m/n/10 logical: should file dates be pre-served where pos-si-ble? See
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 ,
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
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 []                     \T1/pcr/m/n/9 # |--> (TRUE,FALSE) : ok for A but not B 
as it exists already[] 
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 []\T1/pcr/m/n/10 dir.create(path, showWarnings = TRUE, recursive = FALSE, mode
 = "0777")[] 
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 unlink[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 basename[][][][]\T1/
ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 f <- list.files(".", all.files = TRUE, full.names = TRUE, recu
rsive = TRUE)[] 
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[]\T1/pcr/m/n/10 packageNotFoundError []\T1/ptm/m/n/10 cre-ates an er-ror con-d
i-tion ob-ject of class
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 []\T1/pcr/m/n/9 ## will not give an error, maybe a warning about *all* locatio
ns it is found:[] 
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 []\T1/pcr/m/n/10 findInterval(x, vec, rightmost.closed = FALSE, all.inside = F
ALSE, 
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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 []       \T1/pcr/m/n/10 .C(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING) 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 15669--15669
 [] \T1/pcr/m/n/10 .Fortran(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING)[] 
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 []\T1/pcr/m/n/9 ## formals returns a pairlist. Arguments with no default have 
type symbol (aka name).[] 
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 []\T1/pcr/m/n/9 ## formals returns NULL for primitive functions.  Use it in co
mbination with[] 
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[]\T1/ptm/m/n/10 either a log-i-cal spec-i-fy-ing whether el-e-ments of a real 
or com-plex vec-
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\T1/ptm/m/n/10 tor should be en-coded in sci-en-tific for-mat, or an in-te-ger 
penalty (see
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[]\T1/pcr/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 formatC[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 paste
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 sprintf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
rint[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 prettyNum[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 toString[][][][]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 z <- list(a = letters[1:3], b = (-pi+0i)^((-2:2)/2), c = c(1,1
0,100,1000),[] 
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[]\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 is used for ``pret-ti-fy-ing'' (p
os-si-bly for-mat-ted) num-bers, also in
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 []          \T1/pcr/m/n/10 decimal.mark = getOption("OutDec"), input.d.mark = 
decimal.mark,[] 
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 []\T1/pcr/m/n/10 .format.zeros(x, zero.print, nx = suppressWarnings(as.numeric
(x)),[] 
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/pcr/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
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[]\T1/pcr/m/n/10 "f" []\T1/ptm/m/n/10 gives num-bers in the usual []\T1/pcr/m/n
/10 xxx.xxx []\T1/ptm/m/n/10 for-mat; []\T1/pcr/m/n/10 "e" []\T1/ptm/m/n/10 and
 []\T1/pcr/m/n/10 "E" []\T1/ptm/m/n/10 give
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[]\T1/ptm/m/n/10 This works via []\T1/pcr/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/pcr/m/n/10 .format.zeros(*,
Underfull \hbox (badness 10000) in paragraph at lines 16425--16430
[]\T1/ptm/m/n/10 For num-bers, []\T1/pcr/m/n/10 formatC() []\T1/ptm/m/n/10 call
s []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 when needed which it-self calls
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[]\T1/ptm/m/n/10 If you set []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 it over-ri
des the set-ting of []\T1/pcr/m/n/10 mode[]\T1/ptm/m/n/10 , so []\T1/pcr/m/n/10
 formatC(123.45, mode =
Underfull \hbox (badness 10000) in paragraph at lines 16442--16450
[]\T1/pcr/m/n/10 prettyNum []\T1/ptm/m/n/10 is the util-ity func-tion for pret-
ti-fy-ing []\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 x []\T1/ptm/m/n
/10 can be com-plex (or
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 []\T1/pcr/m/n/9 fc <- formatC(1.234 + 10^(0:8), format = "fg", width = 11, big
.mark = "\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ")[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []\T1/pcr/m/n/9 doLC <- FALSE # <= R warns, so change to TRUE manually if you 
want see the effect[] 
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 []\T1/pcr/m/n/10 Reduce(f, x, init, right = FALSE, accumulate = FALSE, simplif
y = TRUE) 
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 []\T1/pcr/m/n/9 utils::tail(getLoadedDLLs(), 2) # the last 2 loaded ones, stil
l a DLLInfoList[] 
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\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/pcr/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 name []\T1/ptm/m/n/10 con-tains only one s
ym-bol name and []\T1/pcr/m/n/10 unlist []\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 TR
UE[]\T1/ptm/m/n/10 , then the sin-gle
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[][][]\T1/pcr/m/n/10 getDLLRegisteredRoutines[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 is.loaded[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .C[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Fortran[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 .External[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Call[][][][]
\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 ## Not run: ## for translation, those strings should appear in
 R-pkg.pot as[] 
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 []\T1/pcr/m/n/9 if(is.na(thisLang) || !nzchar(thisLang)) thisLang <- "en" # "f
actory" default[] 
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 []\T1/pcr/m/n/9 gettext(enT, domain="R-stats")# "leeres Modell angegeben" (if 
translation works)[] 
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 []\T1/pcr/m/n/9 ## Here, we reset to the *original* setting before the full ex
ample started:[] 
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 []\T1/pcr/m/n/10 grep(pattern, x, ignore.case = FALSE, perl = FALSE, value = F
ALSE, 
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[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
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 []  \T1/pcr/m/n/9 nms <- nms[is.na(match(nms, c("F","T")))] # <-- work around 
"checking hack"[] 
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 []\T1/pcr/m/n/9 name.rex <- "(?<first>[[:upper:]][[:lower:]]+) (?<last>[[:uppe
r:]][[:lower:]]+)"[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []        \T1/pcr/m/n/10 value = FALSE, fixed = FALSE, all = FALSE, invert = F
ALSE)[] 
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 []\T1/pcr/m/n/9 (ii <- grouping(x <- c(1, 1, 3:1, 1:4, 3), y <- c(9, 9:1), z <
- c(2, 1:9))) 
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 []\T1/pcr/m/n/9 z <- gzcon(url("https://www.stats.ox.ac.uk/pub/datasets/csb/ch
12.dat.gz"))[] 
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 []\T1/pcr/m/n/10 iconv(x, from = "", to = "", sub = NA, mark = TRUE, toRaw = F
ALSE) 
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[]\T1/ptm/m/n/10 The most portable name for the ISO 8859-15 en-cod-ing, com-mon
ly known as `Latin 9',
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\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 "iso885915"[]\T1/ptm/m/n/10 : most plat-form
s sup-port both []\T1/pcr/m/n/10 "latin-9" []\T1/ptm/m/n/10 and[]\T1/pcr/m/n/10
 "latin9" []\T1/ptm/m/n/10 but GNU
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Underfull \hbox (badness 1163) in paragraph at lines 19374--19376
[]\T1/ptm/m/n/10 The ICU user guide chap-ter on col-la-tion ([][]$\T1/pcr/m/n/1
0 https : / / unicode-[]org . github . io / icu /
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 []\T1/pcr/m/n/9 ## As we don\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 t know the current s
ettings, we can only reset to the default.[] 
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 []\T1/pcr/m/n/10 identical(x, y, num.eq = TRUE, single.NA = TRUE, attrib.as.se
t = TRUE, 
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 []              \T1/pcr/m/n/10 num.eq = FALSE, single.NA = FALSE, attrib.as.se
t = FALSE,[] 
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 []              \T1/pcr/m/n/10 ignore.bytecode = FALSE, ignore.environment = F
ALSE,[] 
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 []\T1/pcr/m/n/9 ### For functions ("closure"s): ------------------------------
----------------[] 
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 []\T1/pcr/m/n/9 identical(f, g)                        # TRUE, as bytecode is 
ignored by default[] 
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 []\T1/pcr/m/n/9 ## GLM families contain several functions, some of which share
 an environment:[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19575--19575
 []\T1/pcr/m/n/9 op <- options(keep.source = TRUE) # and so, these have differi
ng "srcref" :[] 
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 []\T1/pcr/m/n/9 ## This is a (not atypical) case where it is better *not* to u
se ifelse(),[] 
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 []\T1/pcr/m/n/9 ## example of different return modes (and \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 test\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 alone determining length):[] 
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[]\T1/ptm/m/n/10 how some er-rors are han-dled and re-ported, e.g. see [][][]\T
1/pcr/m/n/10 stop[][][] []\T1/ptm/m/n/10 and
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[][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 ,
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\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle
 . com / cd / E19957-[]01 / 806-[]3568 / ncg _
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[]\T1/pcr/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/10 ISOdate(year, month, day, hour = 12, min = 0, sec = 0, tz = "
GMT")[] 
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[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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 []\T1/pcr/m/n/9 isSymmetric(D3)                         # FALSE (as row and co
lumn names differ)[] 
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 []\T1/pcr/m/n/9 isSymmetric(D3, check.attributes=FALSE) # TRUE  (as names are 
not checked)[] 
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 []\T1/pcr/m/n/10 .kappa_tri(z, exact = FALSE, LINPACK = TRUE, norm = NULL, upl
o = "U", ...)[] 
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 []\T1/pcr/m/n/10 rcond(x, norm = c("O","I","1"), triangular = FALSE, uplo = "U
", ...)[] 
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[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
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 []\T1/pcr/m/n/9 ## Moore-Penrose inverse { ~= MASS::ginv(); differing tol (val
ue & meaning)}:[] 
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 []\T1/pcr/m/n/9 try( kappa(m76, exact=TRUE, norm="1") )# error in  solve().. m
ust be square[] 
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 []\T1/pcr/m/n/9 ## ==> use pseudo-inverse instead of solve() for rectangular {
and norm != "2"}:[] 
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 []    \T1/pcr/m/n/9 kappa(A, exact=TRUE, norm = "1", inv_z = solve(A, tol = 1e
-19)) ## 5.22057e16[] 
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[]\T1/ptm/m/n/10 The value of the in-ter-nal eval-u-a-tion of a top-level \T1/p
hv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sion is al-ways as-signed to
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[]\T1/ptm/m/n/10 In late 2017 a []\T1/pcr/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/pcr/m/n/10 libcurl []\T
1/ptm/m/n/10 and
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[][][]$\T1/pcr/m/n/10 https : / / curl . se / docs / sslcerts . html$[][] \T1/p
tm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / curl . se / docs /
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[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/pcr/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2970) in paragraph at lines 21996--21999
[]\T1/pcr/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/pcr/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a
Underfull \hbox (badness 2951) in paragraph at lines 21996--21999
\T1/ptm/m/n/10 hid-den di-rec-tory and may not be viewed by some soft-ware. It 
may be opened by
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[]\T1/ptm/m/n/10 To sup-press mes-sages dur-ing the load-ing of pack-ages use
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[][][]\T1/pcr/m/n/10 suppressPackageStartupMessages[][][][]\T1/ptm/m/n/10 : thi
s will sup-press all mes-sages from \T1/phv/m/n/10 R \T1/ptm/m/n/10 it-self
Underfull \hbox (badness 1221) in paragraph at lines 22114--22121
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 is called with no
 []\T1/pcr/m/n/10 package []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 help []\T1/ptm/m
/n/10 ar-gu-ment, it lists all avail-able pack-
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[][][]\T1/pcr/m/n/10 attach[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 detach
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 search[][][][]\T1/ptm/m/n/10 , []
[][]\T1/pcr/m/n/10 objects[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 autoloa
d[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 requireNamespace[][][][]\T1/ptm/
m/n/10 ,
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[]\T1/ptm/m/n/10 Do not use [][][]\T1/pcr/m/n/10 dyn.unload[][][] []\T1/ptm/m/n
/10 on a DLL loaded by []\T1/pcr/m/n/10 library.dynam[]\T1/ptm/m/n/10 : use
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 files[][][] []\T1/ptm/
m/n/10 for many more file han-dling func-tions and
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 []          \T1/pcr/m/n/9 identical(L$b, e$b)) # "$" working for environments 
as for lists[] 
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 []              \T1/pcr/m/n/9 df = data.frame(x = rnorm(20), y = rbinom(20, 1,
 prob = 0.2))),[] 
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 []\T1/pcr/m/n/9 ## This however annihilates all objects in .GlobalEnv with the
 same names ![] 
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 []\T1/pcr/m/n/9 attach("all.rda") # safer and will warn about masked objects w
/ same name in .GlobalEnv[] 
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[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-
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[]\T1/ptm/m/n/10 Almost all the out-put rou-tines used by \T1/phv/m/n/10 R \T1/
ptm/m/n/10 it-self un-der Win-dows ig-nore the set-ting of
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 []\T1/pcr/m/n/9 Sys.setlocale("LC_TIME", "de_DE.UTF-8")  # Linux, macOS, other
 Unix-alikes[] 
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 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # in C_TIME locale \T
S1/pcr/m/n/9 '\T1/pcr/m/n/9 cT\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 ; typically German
[] 
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 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # "standard" (still p
latform specific ?)[] 
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 []\T1/pcr/m/n/9 ## Not run: Sys.setlocale("LC_COLLATE", "C")   # turn off loca
le-specific sorting,[] 
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 []\T1/pcr/m/n/9 Sys.setenv("LANGUAGE" = "es") # set the language for error/war
ning messages[] 
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[][][]\T1/pcr/m/n/10 raw[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logical[]
[][] []\T1/ptm/m/n/10 or `number-like' vec-tors (i.e., of types [][][]\T1/pcr/m
/n/10 double[][][] []\T1/ptm/m/n/10 (class
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 []\T1/pcr/m/n/9 zN <- c(complex(real = NA , imaginary =  r ), complex(real =  
r , imaginary = NA ),[] 
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 []        \T1/pcr/m/n/9 complex(real =  r , imaginary = NaN), complex(real = N
aN, imaginary =  r ))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 24168--24168
 []\T1/pcr/m/n/9 zM ##--> many "NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s" (= 1) and th
e four non-NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s (3 different ones, at 7,9,10)[] 
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 []\T1/pcr/m/n/9 match.arg(c("a", ""),  c("", NA, "bb", "abc"), several.ok=TRUE
) # |-->  "abc"[] 
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[]\T1/ptm/m/n/10 `function' on this help page means an in-ter-preted func-tion 
(also known as a `clo-sure'):
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[]\T1/ptm/m/n/10 For ma-trix \T1/ptm/m/it/10 cross \T1/ptm/m/n/10 prod-ucts, []
[][]\T1/pcr/m/n/10 crossprod[][][]() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 tcro
ssprod() []\T1/ptm/m/n/10 are typ-i-cally prefer-able.
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[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
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\T1/ptm/m/n/10 changed to al-low more (up to 3Gb). See [][]$\T1/pcr/m/n/10 http
s : / / docs . microsoft . com / en-[]gb /
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 []      \T1/pcr/m/n/10 by.x = by, by.y = by, all = FALSE, all.x = all, all.y =
 all,[] 
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[]\T1/pcr/m/n/10 anyNA(recursive = FALSE) []\T1/ptm/m/n/10 works the same way a
s []\T1/pcr/m/n/10 is.na[]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 anyNA(recursive =
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[]\T1/pcr/m/n/10 as.name []\T1/ptm/m/n/10 first co-erces its ar-gu-ment in-ter-
nally to a char-ac-ter vec-tor (so meth-ods for
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[]\T1/ptm/m/n/10 For an [][][]\T1/pcr/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list,
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\T1/ptm/m/n/10 i.e., []\T1/pcr/m/n/10 names(as.list(env, all.names = TRUE)) []\
T1/ptm/m/n/10 which are also given by [][][]\T1/pcr/m/n/10 ls[][][](env,
Underfull \hbox (badness 3148) in paragraph at lines 25988--25994
\T1/pcr/m/n/10 all.names = TRUE, sorted = FALSE)[]\T1/ptm/m/n/10 . If the en-vi
-ron-ment is used as a hash ta-ble,
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[]\T1/ptm/m/n/10 character string: par-tial match-ing to one of []\T1/pcr/m/n/1
0 c("bytes", "chars",
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[]\T1/ptm/m/n/10 optional [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/pcr/m/n/10 print()[]\T1/ptm/m/n/10 , used by
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\T1/ptm/m/n/10 tion []\T1/pcr/m/n/10 GetFinalPathNameByHandle []\T1/ptm/m/n/10 
and in case of an er-ror (such as in-suf-fi-cient per-
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[]\T1/ptm/m/n/10 Loading a names-pace should where pos-si-ble be silent, with s
tartup mes-sages given by
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[]\T1/pcr/m/n/10 .onAttach[]\T1/ptm/m/n/10 . These mes-sages (and any es-sen-ti
al ones from []\T1/pcr/m/n/10 .onLoad[]\T1/ptm/m/n/10 ) should use
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[]\T1/ptm/m/n/10 Uses of []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 with ar-gu-m
ent []\T1/pcr/m/n/10 help []\T1/ptm/m/n/10 to dis-play ba-sic in-for-ma-tion ab
out the pack-
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\T1/ptm/m/n/10 age should use []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 on the c
om-puted pack-age in-for-ma-tion ob-ject and pass this to
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 []\T1/pcr/m/n/10 attachNamespace(ns, pos = 2L, depends = NULL, exclude, includ
e.only) 
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 []              \T1/pcr/m/n/10 keep.parse.data = getOption("keep.parse.data.pk
gs"))[] 
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[]\T1/pcr/m/n/10 loadNamespace []\T1/ptm/m/n/10 does not at-tach the name space
 it loads to the search path.
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[]\T1/pcr/m/n/10 attachNamespace []\T1/ptm/m/n/10 can be used to at-tach a fram
e con-tain-ing the ex-ported val-ues of a
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[]\T1/pcr/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/pcr/m/n/10 pkg %in%
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 [] \T1/pcr/m/n/9 ## The string "foo" and the symbol \TS1/pcr/m/n/9 '\T1/pcr/m/
n/9 foo\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 can be used interchangably here:[] 
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[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 is.numeric []\T1/ptm/
m/n/10 re-turns []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 if its ar-gu-ment is of 
[][]mode[][][]
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\T1/ptm/m/n/10 ject as ob-tained by [][][]\T1/pcr/m/n/10 R.version[][][][]\T1/p
tm/m/n/10 . For []\T1/pcr/m/n/10 as.numeric_version []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 date ob-jects or char-ac-ter vec-tors. (Char-ac-ter vec-tors a
re con-verted by
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[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-
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[]\T1/ptm/m/n/10 default PDF viewer. The de-fault is set from the en-vi-ron-men
t vari-able
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[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/pcr/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
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\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/pcr/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
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\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
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[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
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[]\T1/ptm/m/n/10 logical: should per-directory pack-age lock-ing be used by
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[]\T1/ptm/m/n/10 Used by [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
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[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/pcr/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/pcr/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The de-fault type of pack-ages to be down-loaded and in-stalle
d -- see
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[]\T1/pcr/m/n/10 "source" []\T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN 
ma-cOS
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\T1/ptm/m/n/10 build), []\T1/pcr/m/n/10 "mac.binary" []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 "both" []\T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS
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\T1/ptm/m/n/10 builds). ([]\T1/pcr/m/n/10 "mac.binary.el-capitan"[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 "mac.binary.mavericks"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "mac.binary.leopard" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "ma
c.binary.universal" []\T1/ptm/m/n/10 are no longer
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 []\T1/pcr/m/n/9 system.time(o <- sort.list(xx, method = "radix")) # 0.007 sec,
 300X faster[] 
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[]\T1/ptm/m/n/10 where el-e-ment []\T1/pcr/m/n/10 A[c(arrayindex.x, arrayindex.
y)] = FUN(X[arrayindex.x],
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[]\T1/pcr/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/pcr/m/n/10 parse(tex
t=s,
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 []\T1/pcr/m/n/9 tryCatch(parse(text = txt, srcfile = sf), error = function(e) 
"Syntax error.")[] 
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\T1/ptm/m/n/10 zero-length [][][]\T1/pcr/m/n/10 character[][][](0)[]\T1/ptm/m/n
/10 . Note that when []\T1/pcr/m/n/10 collapse []\T1/ptm/m/n/10 is a string,
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[][][]\T1/pcr/m/n/10 toString[][][] []\T1/ptm/m/n/10 typ-i-cally calls []\T1/pc
r/m/n/10 paste(*, collapse=", ")[]\T1/ptm/m/n/10 . String ma-nip-u-la-tion with
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 []\T1/pcr/m/n/9 ## Notice that the recycling rules make every input as long as
 the longest input.[] 
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 []\T1/pcr/m/n/9 paste("1st", "2nd", "3rd", collapse = ", ") # probably not wha
t you wanted[] 
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 []\T1/pcr/m/n/9 ## zero length arguments recycled as \TS1/cmtt/m/n/9 `\T1/pcr/
m/n/9 ""\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 -- NB: \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 {
}\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 <==> character(0)  here[] 
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 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 recycle0 = TRUE\TS1/pcr/m/n/9
 ' \T1/pcr/m/n/9 allows standard vectorized behaviour, i.e., zero-length[] 
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 []\T1/pcr/m/n/9 ##                   recycling resulting in zero-length result
 character(0):[] 
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 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- not so good!") # ->  "..
 value is  -- not .."[] 
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 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- good: empty!", recycle0=
TRUE) # -> character(0)[] 
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 []\T1/pcr/m/n/9 paste("foo", {}, "bar", collapse = "|")                  # |--
>  "foo  bar"[] 
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 []\T1/pcr/m/n/9 ## If all arguments are empty (and collapse a string),   ""  r
esults always[] 
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 []\T1/pcr/m/n/9 mtcars |> subset(cyl == 4) |> nrow()  # same as nrow(subset(mt
cars, cyl == 4))[] 
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 []\T1/pcr/m/n/9 stop() |> (function(...) {})() # stop() is not used on RHS so 
is not evaluated[] 
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[]\T1/ptm/m/n/10 All other []\T1/pcr/m/n/10 type[]\T1/ptm/m/n/10 s give a warn-
ing or an er-ror; us-ing, e.g., []\T1/pcr/m/n/10 type =
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\T1/ptm/m/n/10 i.e., strictly in-clude the bounds of []\T1/pcr/m/n/10 x[]\T1/pt
m/m/n/10 . New from \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0, al-low-ing
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[]\T1/ptm/m/n/10 This func-tion is al-most never used: []\TS1/cmtt/m/n/10 `\T1/
pcr/m/n/10 name\TS1/cmtt/m/n/10 ` []\T1/ptm/m/n/10 or, more care-fully, [][][]\
T1/pcr/m/n/10 get[][][](name, envir =
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[]\T1/ptm/m/n/10 character string (or []\T1/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/pcr/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
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[]\T1/ptm/m/n/10 Option []\T1/pcr/m/n/10 width []\T1/ptm/m/n/10 con-trols the p
rint-ing of vec-tors, ma-tri-ces and ar-rays, and op-tion
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 []\T1/pcr/m/n/9 (x <- 2^seq(-8, 30, by=1/4)) # auto-prints; by default all in 
"exponential" format[] 
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[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
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 []           \T1/pcr/m/n/9 c1 = rep(c(1,0,0), 2), c2 = rep(c(0,1,0), 2), c3 = 
rep(c(0,0,1),2))[] 
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 []\T1/pcr/m/n/9 (nn <- "\u0126\u0119\u1114\u022d\u2001\u03e2\u0954\u0f3f\u13d3
\u147b\u203c")[] 
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 []\T1/pcr/m/n/9 n2 <- "\U0126\U0119\U1114\U022d\U2001\U03e2\U0954\U0f3f\U13d3\
U147b\U203c"[] 
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 []\T1/pcr/m/n/9 ## https://cran.r-project.org/doc/manuals/r-release/R-lang.htm
l#Literal-constants[] 
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 []\T1/pcr/m/n/9 ## nul characters (for terminating strings in C) are not allow
ed (parse errors)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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[]\T1/ptm/m/n/10 Do \T1/ptm/m/it/10 not \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R.v
ersion$os []\T1/ptm/m/n/10 to test the plat-form the code is run-ning on: use
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 []\T1/pcr/m/n/9 mtext(R.version.string, side = 1, line = 4, adj = 1) # a usefu
l bottom-right note[] 
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 []\T1/pcr/m/n/10 set.seed(seed, kind = NULL, normal.kind = NULL, sample.kind =
 NULL)[] 
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[]\T1/pcr/m/n/10 normal.kind []\T1/ptm/m/n/10 can be []\T1/pcr/m/n/10 "Kinderma
n-Ramage"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Buggy Kinderman-Ramage" []\T1/ptm
/m/n/10 (not
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\T1/ptm/m/n/10 uni-form pseudo-random num-ber gen-er-a-tor, \T1/ptm/m/it/10 ACM
 Trans-ac-tions on Mod-el-ing and Com-puter
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\T1/ptm/m/n/10 Now see [][]$\T1/pcr/m/n/10 http : / / www . math . sci . hirosh
ima-[]u . ac . jp / ~m-[]mat / MT / VERSIONS /
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[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
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 []     \T1/pcr/m/n/10 ties.method = c("average", "first", "last", "random", "m
ax", "min"))[] 
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[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/pcr/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
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 []\T1/pcr/m/n/9 rapply(X, function(x) x, how = "replace") -> X.; stopifnot(ide
ntical(X, X.))[] 
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 []\T1/pcr/m/n/9 rapply(X, deparse, control = "all") # passing extras. argument
 of deparse()[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "list")[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character",                      h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 rapply(E, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 ## Bit representation  [ sign | exponent | mantissa ] of doubl
e prec numbers :[] 
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 []\T1/pcr/m/n/9 bitC <- function(x) noquote(vapply(as.double(x), function(x) {
 # split one double[] 
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 []\T1/pcr/m/n/9 d2bI <- function(x) vapply(as.double(x), function(x) intToBits
(numToInts(x)), raw(64L))[] 
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 []\T1/pcr/m/n/9 d2b  <- function(x) vapply(as.double(x), function(x)          
 numToBits(x) , raw(64L))[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:
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[]\T1/ptm/m/n/10 Either an ob-ject whose mode will give the mode of the vec-tor
 to
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\T1/ptm/m/n/10 be read, or a char-ac-ter vec-tor of length one de-scrib-ing the
 mode:
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\T1/ptm/m/n/10 one of []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/pcr/m/
n/10 "double"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 "int"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/
10 ,
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 infoRDS[]\T1/ptm/m/n/10 , an \T1/phv/m/n/
10 R \T1/ptm/m/n/10 list with el-e-ments []\T1/pcr/m/n/10 version []\T1/ptm/m/n
/10 (ver-sion num-ber, cur-rently 2 or 3),
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 []\T1/pcr/m/n/9 ## or examine the object via a connection, which will be opene
d as needed.[] 
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[]\T1/pcr/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1968) in paragraph at lines 33874--33876
[]\T1/ptm/m/n/10 This help page is based on the TRE doc-u-men-ta-tion and the P
OSIX stan-dard, and the
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[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/pcr/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs /
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/pcr/m
/n/10 https : / / www .
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 []\T1/pcr/m/n/9 rep(1:4, each = 2, times = 3)         # length 24, 3 complete 
replications[] 
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[][][]\T1/pcr/m/n/10 TRUE[][][] [][]FALSE[][][] [][]NULL[][][] [][]Inf[][][] []
[]NaN[][][] [][]NA[][][] [][]NA_integer_[][][] [][]NA_real_[][][] [][]NA_comple
x_[][][]
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[]\T1/pcr/m/n/10 signif []\T1/ptm/m/n/10 rounds the val-ues in its first ar-gu-
ment to the spec-i-fied num-ber of \T1/ptm/m/it/10 sig-nif-i-cant
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\T1/ptm/m/n/10 dig-its. Hence, for []\T1/pcr/m/n/10 numeric x[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 signif(x, dig) []\T1/ptm/m/n/10 is the same as []\T1/pcr/m/n/
10 round(x, dig -
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"))[] 
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
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 []           \T1/pcr/m/n/10 useHash = (n > 1e+07 && !replace && is.null(prob) 
&& size <= n/2))[] 
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 []     \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, skipNul =
 FALSE)[] 
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
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 []\T1/pcr/m/n/9 cat("TITLE extra line", "2 3 5 7", "11 13 17", file = "ex.data
", sep = "\n") 
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[]\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence []\T1/pcr/
m/n/10 1, 2, ..., length(along.with)[]\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 The fifth form gen-er-ates the se-quence []\T1/pcr/m/n/10 1, 2
, ..., length(from) []\T1/ptm/m/n/10 (as if ar-gu-ment
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[]\T1/pcr/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use
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\T1/ptm/m/n/10 with []\T1/pcr/m/n/10 getConnection[]\T1/ptm/m/n/10 , cor-re-spo
nd-ing to the row names of the ta-ble re-turned by
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[]\T1/ptm/m/n/10 In Win-dows, com-mand line in-ter-pre-ta-tion is done by the a
p-pli-ca-tion as well as the
Underfull \hbox (badness 3492) in paragraph at lines 36819--36830
\T1/ptm/m/n/10 shell. It may de-pend on the com-piler used: Mi-crosoft's rules 
for the C run-time
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\T1/ptm/m/n/10 are given at [][]$\T1/pcr/m/n/10 https : / / learn . microsoft .
 com / en-[]us / cpp / c-[]language /
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\T1/pcr/m/n/10 parsing-[]c-[]command-[]line-[]arguments ? view = msvc-[]160$[][
]\T1/ptm/m/n/10 . It may de-pend on the
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 []         \T1/pcr/m/n/10 method = c("auto", "shell", "quick", "radix"), index
.return = FALSE)[] 
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 []\T1/pcr/m/n/9 sort_by.data.frame(mtcars, ~ list(am, -mpg)) |> subset(select 
= c(am, mpg))[] 
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 []              \T1/pcr/m/n/10 print. = TRUE, echo = TRUE, max.deparse.length 
= Inf,[] 
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 []              \T1/pcr/m/n/10 deparseCtrl = c("keepInteger", "showAttributes"
, "keepNA"),[] 
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 vec-tor, passed as []\T1/
pcr/m/n/10 control []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 deparse[][][]()[]\T
1/ptm/m/n/10 , see also
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[][][]\T1/pcr/m/n/10 .deparseOpts[][][][]\T1/ptm/m/n/10 . In \T1/phv/m/n/10 R \
T1/ptm/m/n/10 ver-sion <= 3.3.x, this was hard-coded to
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 []\T1/pcr/m/n/9 ## (all should look "as if on top level", e.g. non-assignments
 should print:)[] 
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 []\T1/pcr/m/n/9 ### Calculate \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 z-scores\TS1/pcr/m
/n/9 ' \T1/pcr/m/n/9 by group (standardize to mean zero, variance one)[] 
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 []\T1/pcr/m/n/9 ## Notice that assignment form is not used since a variable is
 being added[] 
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[][][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions /
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 []\T1/pcr/m/n/10 srcfile(filename, encoding = getOption("encoding"), Enc = "un
known") 
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 []\T1/pcr/m/n/10 srcfilecopy(filename, lines, timestamp = Sys.time(), isFile =
 FALSE)[] 
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 []\T1/pcr/m/n/9 startsWith(search(), "package:") # typically at least two FALS
E, nowadays often three 
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[]\T1/ptm/m/n/10 A func-tion []\T1/pcr/m/n/10 .First []\T1/ptm/m/n/10 (and [][]
[]\T1/pcr/m/n/10 .Last[][][][]\T1/ptm/m/n/10 ) can be de-fined in ap-pro-pri-at
e `\T1/pcr/m/n/10 .Rprofile\T1/ptm/m/n/10 ' or
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' files or have been
 saved in `\T1/pcr/m/n/10 .RData\T1/ptm/m/n/10 '. If you want a dif-fer-ent
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\T1/ptm/m/n/10 set of pack-ages than the de-fault ones when you start, in-sert 
a call to [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 in the
Underfull \hbox (badness 1231) in paragraph at lines 39104--39114
\T1/pcr/m/n/10 = character()) []\T1/ptm/m/n/10 will at-tach no ex-tra pack-ages
 on startup (only the \T1/ptm/b/n/10 base \T1/ptm/m/n/10 pack-age) (or
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\T1/ptm/m/n/10 set []\T1/pcr/m/n/10 R_DEFAULT_PACKAGES=NULL []\T1/ptm/m/n/10 as
 an en-vi-ron-ment vari-able be-fore run-ning \T1/phv/m/n/10 R\T1/ptm/m/n/10 ).
 Us-ing
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[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/pcr/m/n/10 Renviron.site\T1/ptm/m/n/10 '
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\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
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\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/pcr/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be
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[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
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\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
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\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
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 []\T1/pcr/m/n/9 # Variable expansion in double quotes, string literals with ba
ckslashes in[] 
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[]\T1/ptm/m/n/10 The de-fault han-dler stores the er-ror mes-sage in a buffer; 
it can be re-trieved by
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[]\T1/pcr/m/n/10 geterrmessage()[]\T1/ptm/m/n/10 . It also stores a trace of th
e call stack that can be re-trieved by
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[]\T1/ptm/m/n/10 alternative to []\T1/pcr/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/pcr/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
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 [] \T1/pcr/m/n/10 assert <- function(exprs) eval.parent(substitute(stopifnot(e
xprs = exprs))) 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(pi, 3.141593),  2 < 2, (1:10 < 12), "a" < 
"b") |> try()[] 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(rep(list(pi),4), list(3.1, 3.14, 3.141, 3.
1415))) |> try()[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 '   \T1/pcr/m/n/9 {Yes, learn how to use do.c
all(substitute, ...) in a powerful manner !!}[] 
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 []\T1/pcr/m/n/9 bdy        <- do.call(substitute, list(bdy,   list(stopifnot =
 quote(warnifnot))))[] 
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 []\T1/pcr/m/n/9 bdy[[N-1]] <- do.call(substitute, list(bdy[[N-1]], list(stop =
 quote(warning))))[] 
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[]\T1/ptm/m/n/10 integer de-ter-min-ing the []\T1/pcr/m/n/10 format()[]\T1/ptm/
m/n/10 ing of sec-onds when needed. Note
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 []\T1/pcr/m/n/9 z3 # prints without fractional seconds by default, digits.sec 
= NULL ("= 0")[] 
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 []\T1/pcr/m/n/9 format(s1 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 19
78-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 day
\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ,   len =  7), "%a")[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []\T1/pcr/m/n/9 format(s2 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 20
00-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 mon
th\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 12), "%b")[] 
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 []            \T1/pcr/m/n/10 add the string to the left of the match to the ou
tput.[] 
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 []        \T1/pcr/m/n/10 exdent = 0, prefix = "", simplify = TRUE, initial = p
refix)[] 
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 []\T1/pcr/m/n/9 x <- paste(readLines(file.path(R.home("doc"), "THANKS")), coll
apse = "\n")[] 
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 []\T1/pcr/m/n/9 ## In fact, you can pass vectors into several arguments, and e
verything gets added.[] 
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 []\T1/pcr/m/n/9 ## If there are missing values, the sum is unknown, i.e., also
 missing, ....[] 
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[]\T1/ptm/m/n/10 integer, used for num-ber for-mat-ting with [][][]\T1/pcr/m/n/
10 signif[][][]() []\T1/ptm/m/n/10 (for
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[]\T1/pcr/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][][]\T1/pcr/m/n/10 form
at[][][]() []\T1/ptm/m/n/10 (for []\T1/pcr/m/n/10 summary.data.frame[]\T1/ptm/m
/n/10 ).
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 []\T1/pcr/m/n/9 summary(attenu, digits = 4) #-> summary.data.frame(...), defau
lt precision 
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 []    \T1/pcr/m/n/9 cat(ch,":", switch(EXPR = ch, a =, A = 1, b = 2:3, "Otherw
ise: last"),"\n")[] 
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 []\T1/pcr/m/n/9 if(.Platform$OS.type == "unix") ## on Unix-alikes such Linux, 
macOS, FreeBSD:[] 
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[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-
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\T1/ptm/m/n/10 tails of wild-cards ex-pan-sion, see your sys-tem's doc-u-men-ta
-tion on the []\T1/pcr/m/n/10 glob []\T1/ptm/m/n/10 sys-tem call.
Underfull \hbox (badness 4792) in paragraph at lines 41557--41562
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/pcr/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
Underfull \hbox (badness 1107) in paragraph at lines 41557--41562
[]\T1/pcr/m/n/10 Sys.glob("*.RData") []\T1/ptm/m/n/10 may or may not match `\T1
/pcr/m/n/10 .RData\T1/ptm/m/n/10 ' but will not usu-ally match
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[]\T1/pcr/m/n/10 sys.status() []\T1/ptm/m/n/10 re-turns a list with com-po-nent
s []\T1/pcr/m/n/10 sys.calls[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sys.parents []\
T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 sys.call []\T1/ptm/m/n/10 re-turns a call, []\T1/pcr/m/n/10 sy
s.function []\T1/ptm/m/n/10 a func-tion def-i-ni-tion, and []\T1/pcr/m/n/10 sys
.frame []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/9 is.symlink <- function(paths) isTRUE(nzchar(Sys.readlink(paths
), keepNA=TRUE))[] 
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 []\T1/pcr/m/n/9 print(Sys.setenv(R_TEST = "testit", "A+C" = 123))  # \TS1/cmtt
/m/n/9 `\T1/pcr/m/n/9 A+C\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 could also be used 
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[]\T1/ptm/m/n/10 logical. If []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
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[][][]\T1/pcr/m/n/10 source[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 lo
adNamespace[][][] []\T1/ptm/m/n/10 which is called from [][][]\T1/pcr/m/n/10 li
brary[][][](.) []\T1/ptm/m/n/10 and uses
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[]\T1/ptm/m/n/10 a log-i-cal (not []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 ) in-di-c
at-ing whether mes-sages writ-ten to `\T1/pcr/m/n/10 stdout\T1/ptm/m/n/10 ' or
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\T1/ptm/m/n/10 con-sider it to be piped or redi-rected: []\T1/pcr/m/n/10 stdout
 = TRUE []\T1/ptm/m/n/10 uses a pipe whereas []\T1/pcr/m/n/10 stdout =
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[]\T1/ptm/m/n/10 Use [][][]\T1/pcr/m/n/10 ftable[][][] []\T1/ptm/m/n/10 for pri
nt-ing (and more) of mul-ti-di-men-sional ta-bles. [][][]\T1/pcr/m/n/10 margin.
table[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/pcr/m/n/10 bin []\T1/ptm/m/n/10 can
 have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/pcr/
m/n/10 length(bin) >
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 []            \T1/pcr/m/n/9 matrix(c(1L, 2L, NA, 3L), 2, dimnames = list(c("1"
, "2"), c("A", "B")))),[] 
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 []            \T1/pcr/m/n/9 array(list(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 2\TS1/cm
tt/m/n/9 ` \T1/pcr/m/n/9 = structure(c(2, 5.75, 9.5, 13.25, 17), names = nq),[]
 
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 []                 \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 4\TS1/cmtt/m/n/9 ` \T1/pcr/m
/n/9 = NULL, \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 5\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 = 
NULL), dim=4, dimnames=list(as.character(2:5)))))[] 
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[]\T1/pcr/m/n/10 removeTaskCallback []\T1/ptm/m/n/10 un-registers a func-tion t
hat was reg-is-tered ear-lier via
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[][][]\T1/pcr/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer .
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[]\T1/ptm/m/n/10 Duncan Tem-ple Lang (2001) \T1/ptm/m/it/10 Top-level Task Call
-backs in R\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / developer .
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[][][]\T1/pcr/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/pcr/m/n/10 https : / /
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\T1/ptm/m/n/10 may also be known as `[]\T1/pcr/m/n/10 GB[]\T1/ptm/m/n/10 ', `[]
\T1/pcr/m/n/10 GB-Eire[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Belfast[]\T1
/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Guernsey[]\T1/ptm/m/n/10 ',
Underfull \hbox (badness 2253) in paragraph at lines 44147--44152
[]\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-turns a char-ac-ter vec-tor, se
e the ex-am-ples for typ-i-cal cases. It may
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\T1/ptm/m/n/10 have an at-tribute []\T1/pcr/m/n/10 "Version"[]\T1/ptm/m/n/10 , 
some-thing like `[]\T1/pcr/m/n/10 "2023a"[]\T1/ptm/m/n/10 '. (It does on sys-te
ms us-ing
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[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-
turns the time-zone names known to the cur-rently se-
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\T1/ptm/m/n/10 lected Ol-son/IANA database. The system-specific lo-ca-tion in t
he file sys-tem varies,
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\T1/ptm/m/n/10 a file `\T1/pcr/m/n/10 localtime\T1/ptm/m/n/10 ', usu-ally un-de
r `\T1/pcr/m/n/10 /etc\T1/ptm/m/n/10 ' (but pos-si-bly un-der `\T1/pcr/m/n/10 /
usr/local/etc\T1/ptm/m/n/10 ' or
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[]\T1/ptm/m/n/10 `Because the time zone iden-ti-fier is ex-tracted from the sym
-link tar-get name of
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / data . iana . org /
Underfull \hbox (badness 4429) in paragraph at lines 44370--44372
[][][]$\T1/pcr/m/n/10 https : / / data . iana . org / time-[]zones / theory . h
tml$[][] \T1/ptm/m/n/10 for the `rules' of the Ol-
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 []\T1/pcr/m/n/9 ## typically some acronyms/aliases such as "UTC", "NZ", "MET",
 "Eire", ..., but[] 
[642]
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Overfull \hbox (15.18042pt too wide) in paragraph at lines 44720--44720
 []\T1/pcr/m/n/9 trace(pt, tracer = quote(cat(sprintf("tracing pt(*, ncp = %.15
g)\n", ncp))),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 44722--44722
 []\T1/pcr/m/n/9 power.t.test(20, 1, power=0.8, sd=NULL)  ##--> showing the ncp
 root finding:[] 
[647]
[648]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 44819--44819
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
Overfull \hbox (84.78088pt too wide) in paragraph at lines 44821--44821
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
[649]
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Underfull \hbox (badness 6542) in paragraph at lines 45095--45097
[]\T1/pcr/m/n/10 cospi(x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sinpi(x)[]\T1/ptm/
m/n/10 , and []\T1/pcr/m/n/10 tanpi(x)[]\T1/ptm/m/n/10 , com-pute []\T1/pcr/m/n
/10 cos(pi*x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sin(pi*x)[]\T1/ptm/m/n/10 , an
d
[652]
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 []\T1/pcr/m/n/10 trimws(x, which = c("both", "left", "right"), whitespace = "[
 \t\r\n]") 
[654]
Underfull \hbox (badness 1708) in paragraph at lines 45282--45290
[]\T1/pcr/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
 er-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 3713) in paragraph at lines 45282--45290
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/pcr/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[655]
Underfull \hbox (badness 4859) in paragraph at lines 45322--45327
[][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 for set-ting er-ror han-dle
rs and sup-press-ing the print-ing of er-ror mes-sages;
[656]
Underfull \hbox (badness 3895) in paragraph at lines 45384--45397
[]\T1/ptm/m/n/10 A char-ac-ter string. The pos-si-ble val-ues are listed in the
 struc-ture []\T1/pcr/m/n/10 TypeTable []\T1/ptm/m/n/10 in
Underfull \hbox (badness 1303) in paragraph at lines 45384--45397
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/main/util.c\T1/ptm/m/n/10 '. Cur-rent val-ue
s are the vec-tor types []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "integer"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2452) in paragraph at lines 45384--45397
[]\T1/pcr/m/n/10 "promise"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "object"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "language"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "char"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "..."[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "a
ny"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expression"[]\T1/ptm/m/n/10 ,
[657]
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 45733--45733
 []\T1/pcr/m/n/9 ll <- list(as.name("sinc"), quote( a + b ), 1:10, letters, exp
ression(1+x))[] 
[662]
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[]\T1/ptm/m/n/10 When a func-tion call-ing []\T1/pcr/m/n/10 UseMethod("fun") []
\T1/ptm/m/n/10 is ap-plied to an ob-ject with class vec-tor
[665]
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[669]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 46251--46251
 []\T1/pcr/m/n/9 (xx <- intToUtf8(x, , TRUE)) # will only display in some local
es and fonts[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 46260--46260
 []\T1/pcr/m/n/9 system(paste("od -x", foo)) # 2-byte units, correct on little-
endian platforms[] 
[670]
Underfull \hbox (badness 1721) in paragraph at lines 46322--46339
[][][]\T1/pcr/m/n/10 file.rename[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 f
ile.symlink[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 dir.create[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dir.exists[][][][]\T1/ptm/m/n/10 , [][][]\
T1/pcr/m/n/10 normalizePath[][][][]\T1/ptm/m/n/10 ,
[671]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 46424--46424
 []\T1/pcr/m/n/9 try( substr(x, 1,1) ) # gives \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 in
valid multibyte string\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 error in a UTF-8 locale[] 
[672]
Underfull \hbox (badness 1803) in paragraph at lines 46487--46490
[]\T1/ptm/m/n/10 The atomic modes are []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric" []\
T1/ptm/m/n/10 (syn-onym []\T1/pcr/m/n/10 "double"[]\T1/ptm/m/n/10 ),
Underfull \hbox (badness 3471) in paragraph at lines 46491--46497
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 mode = "any"[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 is.vector []\T1/ptm/m/n/10 may re-turn []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/
n/10 for the atomic modes, [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 and
[673]
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[675]
Underfull \hbox (badness 1014) in paragraph at lines 46719--46722
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if
[676]
[677]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 46828--46828
 []      \T1/pcr/m/n/10 header = ngettext(n, "Warning message:\n", "Warning mes
sages:\n"),[] 
[678]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 46905--46905
 []\T1/pcr/m/n/9 ## at the end prints all three warnings, from the \TS1/pcr/m/n
/9 '\T1/pcr/m/n/9 option(warn = 0)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 above[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 46913--46913
 []\T1/pcr/m/n/9 x <- 1:36; for(n in 1:13) for(m in 1:12) A <- matrix(x, n,m) #
 There were 105 warnings ...[] 
[679]
Underfull \hbox (badness 1783) in paragraph at lines 46978--46980
[]\T1/pcr/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 months []\T1/pt
m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[680]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 47008--47008
 []\T1/pcr/m/n/9 ## Show how easily you get month, day, year, day (of {month, w
eek, yr}), ... :[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 47020--47020
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Even simpler:  Date -> Matrix
 - dropping time info {sec,min,hour, isdst}[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 47023--47023
 []\T1/pcr/m/n/9 d2mat(seq(as.Date("2000-02-02"), by=1, length.out=30)) # has R
 1.0.0\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s release date[] 
[681]
Underfull \hbox (badness 10000) in paragraph at lines 47085--47090
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 arr.ind == TRUE []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 x []\T1/ptm/m/n/10 is an [][][]\T1/pcr/m/n/10 array[][][] []\T1/ptm
/m/n/10 (has a [][][]\T1/pcr/m/n/10 dim[][][] []\T1/ptm/m/n/10 at-tribute), the
 re-sult is
Underfull \hbox (badness 2564) in paragraph at lines 47085--47090
[]\T1/pcr/m/n/10 arrayInd(which(x), dim(x), dimnames(x))[]\T1/ptm/m/n/10 , name
ly a ma-trix whose rows each
[682]
Underfull \hbox (badness 2818) in paragraph at lines 47183--47189
[]\T1/ptm/m/n/10 For a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 vec-
tor []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with both []\T1/pcr/m/n/10 FALSE []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 val-ues, []\T1/pcr/m/n/10
 which.min(x) []\T1/ptm/m/n/10 and
[683]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 47218--47218
 []\T1/pcr/m/n/9 ## Find the first occurrence, i.e. the first TRUE, if there is
 at least one:[] 
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Underfull \hbox (badness 2846) in paragraph at lines 47713--47717
[]\T1/pcr/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[691]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 47753--47753
 []\T1/pcr/m/n/9 .packages(all.available = TRUE) # return all available as char
acter vector[] 
Underfull \hbox (badness 3209) in paragraph at lines 47774--47778
[]\T1/pcr/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[692]) (./compiler-pkg.tex
Chapter 2.
[693]
Underfull \hbox (badness 2884) in paragraph at lines 107--121
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 options []\T1/ptm/m/n/10 ar-gu-ment can b
e used to con-trol com-piler op-er-a-tion. There are cur-
Underfull \hbox (badness 10000) in paragraph at lines 107--121
\T1/ptm/m/n/10 rently four op-tions: []\T1/pcr/m/n/10 optimize[]\T1/ptm/m/n/10 
, []\T1/pcr/m/n/10 suppressAll[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressUndef
ined[]\T1/ptm/m/n/10 , and
[694]
[695]
[696]) (./datasets-pkg.tex
Chapter 3.
[697]
[698]
[699]
[700]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 297--297
 []  \T1/pcr/m/n/9 plot(ff, data = anscombe, col = "red", pch = 21, bg = "orang
e", cex = 1.2,[] 
[701]
[702]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 375--375
 []\T1/pcr/m/n/9 coplot(accel ~ dist | as.factor(event), data = attenu, show.gi
ven = FALSE)[] 
[703]
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 613--613
 []           \T1/pcr/m/n/9 start = c(lrc = log(.35)), algorithm = "plinear", t
race = TRUE)[] 
[706]
[707]
Underfull \hbox (badness 4779) in paragraph at lines 700--703
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[708]
[709]
Underfull \hbox (badness 4779) in paragraph at lines 832--835
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[710]
[711]
Underfull \hbox (badness 1097) in paragraph at lines 1034--1038
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[712]
[713]
Underfull \hbox (badness 4779) in paragraph at lines 1149--1152
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[714]
[715]
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[718]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1463--1463
 []\T1/pcr/m/n/9 plot(names(te), te, type = "h", main = f.tit, xlab = "Eruption
 time (sec)")[] 
[719]
[720]
Underfull \hbox (badness 10000) in paragraph at lines 1548--1551
[]\T1/ptm/m/n/10 Finally, []\T1/pcr/m/n/10 freeny []\T1/ptm/m/n/10 is a data fr
ame with vari-ables []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lag.q
uarterly.revenue[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2903) in paragraph at lines 1548--1551
[]\T1/pcr/m/n/10 price.index[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 income.level[]\
T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 market.potential []\T1/ptm/m/n/10 ob-taine
d from the above
[721]
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[723]
Underfull \hbox (badness 4779) in paragraph at lines 1737--1740
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[724]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1835--1835
 []\T1/pcr/m/n/9 model1 <- glm(case ~ spontaneous+induced, data = infert, famil
y = binomial())[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1843--1843
 []  \T1/pcr/m/n/9 model3 <- clogit(case ~ spontaneous+induced+strata(stratum),
 data = infert)[] 
[725]
[726]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1960--1960
 []\T1/pcr/m/n/9 ## Iris versicolor "differs twice as much from I. setosa as fr
om I. virginica"[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1965--1965
 []\T1/pcr/m/n/9 ## equivalence of legacy array (iris3) and data.frame (iris) r
epresentation[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1969--1969
 []                                        \T1/pcr/m/n/9 sub(" W.",".Width", dn
i3[[2]])))),[] 
[727]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1970--1970
 []    \T1/pcr/m/n/9 Species = gl(3, 50, labels = sub("S", "s", sub("V", "v", d
ni3[[3]]))))[] 
[728]
[729]
[730]
Underfull \hbox (badness 4779) in paragraph at lines 2173--2176
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
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[738]
[739]
Underfull \hbox (badness 4779) in paragraph at lines 2738--2741
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
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[741]
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[743]
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[745]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3168--3168
 []\T1/pcr/m/n/9 pairs(quakes, main = "Fiji Earthquakes, N = 1000", cex.main = 
1.2, pch = ".")[] 
[746]
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 []\T1/pcr/m/n/9 myrandu <- matrix(NA_real_, 400, 3, dimnames = list(NULL, c("x
","y","z")))[] 
[747]
[748]
[749]
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[751]
Overfull \hbox (47.58038pt too wide) in paragraph at lines 3521--3521
 []\T1/pcr/m/n/9 ## Alaska and Hawaii are placed just off the West Coast (for c
ompact map drawing):[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 3523--3523
 []\T1/pcr/m/n/9 ## state.center2 := version of state.center with "correct" coo
rdinates for AK & HI:[] 
Overfull \hbox (85.38034pt too wide) in paragraph at lines 3524--3524
 []\T1/pcr/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
[752]
Underfull \hbox (badness 1259) in paragraph at lines 3572--3575
\T1/ptm/m/n/10 Av. Cir-cu-laire, 3, B-1180 BRUS-SELS Cur-rently at [][]$\T1/pcr
/m/n/10 https : / / www . sidc . be / SILSO /
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3618--3618
 []\T1/pcr/m/n/9 ## How to recreate the "old" sunspot.month (R <= 3.0.3) =: sun
spot.month.0[] 
[753]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3671--3671
 []\T1/pcr/m/n/9 (t2 <- c(min(  end(sm)[1],end(sy)[1]), 12)) # Dec 1983 (will n
ot be updated!)[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3675--3675
 []          \T1/pcr/m/n/9 ## The yearly series *is* close to the averages of t
he monthly one:[] 
[754] [755]
[756]
Underfull \hbox (badness 4779) in paragraph at lines 3823--3826
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[757]
[758]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 4032--4032
 []       \T1/pcr/m/n/9 xlab = "ToothGrowth data: length vs dose, given type of
 supplement")[] 
[759]
Underfull \hbox (badness 10000) in paragraph at lines 4068--4070
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/pcr/m/n/10 h
ttps : / / web . archive . org / web /
Underfull \hbox (badness 10000) in paragraph at lines 4068--4070
\T1/pcr/m/n/10 20110523225828 / http : / / www . ltrr . arizona . edu / ~hallma
n / sitephotos /
[760]
[761]
[762]
[763]
[764]
[765] [766]
[767]
[768]
[769]
[770]
[771]
[772]
[773]) (./grDevices-pkg.tex
[774]
Chapter 4.
[775]
[776]
[777]
[778]
Underfull \hbox (badness 4752) in paragraph at lines 297--302
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/pcr/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/pcr/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
Underfull \hbox (badness 2865) in paragraph at lines 297--302
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R\T1/pcr/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 
' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack
-age func-tion
[779]
[780]
[781]
[782]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 527--527
 []\T1/pcr/m/n/10 cairo_pdf(filename = if(onefile) "Rplots.pdf" else "Rplot%03d
.pdf",[] 
[783]
[784]
[785]
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[787]
Underfull \hbox (badness 2245) in paragraph at lines 909--914
[]\T1/ptm/m/n/10 Hexadecimal string col-ors can be in the long hex-adec-i-mal f
orm (e.g., []\T1/pcr/m/n/10 "#rrggbb" []\T1/ptm/m/n/10 or
[788]
[789]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 973--973
 []\T1/pcr/m/n/9 names(clmult) <- sapply(clmult, function(x) paste(crgb[,x[1]],
 collapse = ","))[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 980--980
 []    \T1/pcr/m/n/9 lattice::cloud(blue ~ red + green, data = as.data.frame(tc
), col = cNms)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 983--983
 []\T1/pcr/m/n/9 cNms[isC] # "white" "black" "blue" "cyan" "green" "magenta" "r
ed" "yellow"[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 990--990
 []   \T1/pcr/m/n/9 plot3d (tc, col = cNms, size = 11) # --> rotate w/ mouse; e
nlarged corners:[] 
[790]
[791]
[792]
[793]
Underfull \hbox (badness 5175) in paragraph at lines 1229--1231
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[794]
[795]
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 []\T1/pcr/m/n/9 zapsmall(lab <- convertColor(cols, from = "sRGB", to = "Lab", 
scale.in = 255))[] 
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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/pcr/m/n/10 c("LinearGradient", "RadialGradient", "TilingPattern")
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[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 dev.print []\T1/ptm/m/n/10 i
s to pro-duce and print a postscript copy. This will not
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\T1/ptm/m/n/10 sys-tem: see [][][]\T1/pcr/m/n/10 postscript[][][] []\T1/ptm/m/n
/10 for how to set this up. Win-dows users may pre-fer to use
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 []\T1/pcr/m/n/10 dev2bitmap(file, type = "png16m", height = 7, width = 7, res 
= 72,[] 
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[]\T1/ptm/m/n/10 The types avail-able will de-pend on the ver-sion of []\T1/pcr
/m/n/10 ghostscript[]\T1/ptm/m/n/10 , but are likely to in-
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[]\T1/pcr/m/n/10 "tiffg4"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffgray"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "tifflzw"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffp
ack"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiff12nc"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "tiff24nc"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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ter())[] 
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/pcr/m/n/10 embedGlyphs() []\T1/ptm/m/n/10 is rec-om-mended for []\T1/pcr/
m/n/10 pdf() []\T1/ptm/m/n/10 files that con-tain type-set glyphs (see
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[]\T1/ptm/m/n/10 are given, then it uses those in a call to []\T1/pcr/m/n/10 se
tGraphicsEventHandlers []\T1/ptm/m/n/10 to re-place
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\T1/ptm/m/n/10 any ex-ist-ing han-dlers in the cur-rent de-vice. This is for co
m-pat-i-bil-ity with pre-2.12.0
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\T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions. The cur-rent nor-mal way to set up e
vent han-dlers is to set them us-ing
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[]\T1/pcr/m/n/10 setGraphicsEventHandlers []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 
setGraphicsEventEnv []\T1/ptm/m/n/10 on one or more graph-ics
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 []\T1/pcr/m/n/9 dragplot <- function(..., xlim = NULL, ylim = NULL, xaxs = "r"
, yaxs = "r") {[] 
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 []\T1/pcr/m/n/10 gray.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE) 
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 []\T1/pcr/m/n/10 grey.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE)[] 
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 []\T1/pcr/m/n/10 colorConverter(toXYZ, fromXYZ, name, white = NULL, vectorized
 = FALSE)[] 
[827]
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 []\T1/pcr/m/n/9 zapsmall(luv <- convertColor(cols, from = "sRGB", to = "Luv", 
scale.in = 255))[] 
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 []\T1/pcr/m/n/9 (hex <- convertColor(luv, from = "Luv",  to = hexcolor, scale.
out = NULL))[] 
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[]\T1/pcr/m/n/10 nclass.FD []\T1/ptm/m/n/10 uses the Freedman-Diaconis choice b
ased on the inter-quartile range
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 []\T1/pcr/m/n/10 palette.colors(n = NULL, palette = "Okabe-Ito", alpha, recycl
e = FALSE,[] 
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 []\T1/pcr/m/n/9 (palette(gray(seq(0,.9,length.out = 25)))) # gray scales; prin
t old palette[] 
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 []\T1/pcr/m/n/9 ## Demonstrate the colors 1:8 in different palettes using a cu
stom matplot()[] 
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 []    \T1/pcr/m/n/9 matplot(x, type = "l", lwd = 4, lty = 1, col = 1:n, ylab =
 "", main=main)[] 
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 []\T1/pcr/m/n/9 palROB <- colorRampPalette(c("red", "darkorange2", "blue"), sp
ace = "Lab")[] 
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 []\T1/pcr/m/n/10 hcl.colors(n, palette = "viridis", alpha = NULL, rev = FALSE,
 fixup = TRUE) 
[834]
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[]\T1/ptm/m/n/10 the type of palettes to list: []\T1/pcr/m/n/10 "qualitative"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sequential"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 For ex-am-ple, []\T1/pcr/m/n/10 "Dark 3" []\T1/ptm/m/n/10 work
s well for shad-ing points or lines in up to five groups,
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\T1/pcr/m/n/10 wikipedia . org / w / index . php ? title = HCL _ color _ space 
& oldid = 883465135$[][]\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 as `\T1/pcr/m/n/10 "CP1250.enc"\T1/ptm/m/n/10 ' (Cen-tral Eu-r
o-pean), []\T1/pcr/m/n/10 "CP1251.enc"
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\T1/ptm/m/n/10 PostScript fonts fam-i-lies of those names which are in-cluded (
or cloned) in all com-mon
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\T1/ptm/m/n/10 cod-ings (ex-cept []\T1/pcr/m/n/10 "TeXtext"[]\T1/ptm/m/n/10 ) a
gree over that range. Some en-cod-ings are su-per-sets of
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\T1/ptm/m/n/10 ISO-Latin1. How-ever, if ac-cented and spe-cial char-ac-ters do 
not come out as you ex-
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 fonts[]\T1/ptm/m/n/10 ,
[844]
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[846]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4875 \aliasA{symbol}{plotmath}{symbol}
                                         [847] [848]
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, [][]$\T1/pcr/m/n/10 https : / / ww
w . iso . org / standard / 34342 . html$[][]\T1/ptm/m/n/10 . See also
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 []\T1/pcr/m/n/9 ## Not run: dev.print(png, filename = "myplot.png", width = 10
24, height = 768)[] 
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[]\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE[]\T1/ptm/m/n/10 
, give a C in-te-ger for-mat such as
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[][][]\T1/pcr/m/n/10 postscriptFonts[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 Devices[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 check.options[][][]
 []\T1/ptm/m/n/10 which is called from both
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[]\T1/pcr/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Bookman"[]\T1
/ptm/m/n/10 , []\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "He
lvetica"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10 
,
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[]\T1/pcr/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/pc
r/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "URWBookman"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusMon"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusSan" []\T1/ptm/m/n/10 (syn-onym []\T1/p
cr/m/n/10 "URWHelvetica"[]\T1/ptm/m/n/10 ),
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[]\T1/ptm/m/n/10 There are also map-pings for []\T1/pcr/m/n/10 "ComputerModern"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ComputerModernItalic" []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 "Japan1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1HeiMin"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1GothicBBB"[]\T1/ptm/m/n/10 , and []\T1/p
cr/m/n/10 "Japan1Ryumin" []\T1/ptm/m/n/10 for
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[]\T1/pcr/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/p
cr/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[862]
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 []\T1/pcr/m/n/9 ## time ranges in diverse scales:% also in ../../../../tests/r
eg-tests-1c.R[] 
[864]
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 []\T1/pcr/m/n/10 quartz.save(file, type = "png", device = dev.cur(), dpi = 100
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[]\T1/ptm/m/n/10 Calling []\T1/pcr/m/n/10 quartz() []\T1/ptm/m/n/10 sets [][][]
\T1/pcr/m/n/10 .Device[][][] []\T1/ptm/m/n/10 to []\T1/pcr/m/n/10 "quartz" []\T
1/ptm/m/n/10 for on-screen de-vices and to
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 []  \T1/pcr/m/n/9 quartzFonts("mono")          # the list(mono = ..) sublist o
f quartzFonts()[] 
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\T1/ptm/m/n/10 play List", [][]$\T1/pcr/m/n/10 https : / / stattech . wordpress
 . fos . auckland . ac . nz / 2015 / 12 / 21 /
[871]
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 []\T1/pcr/m/n/9 rgb((0:15)/15, green = 0, blue = 0, names = paste("red", 0:15,
 sep = "."))[] 
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[]\T1/pcr/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
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 []\T1/pcr/m/n/9 p <- persp(x, y, fxy <- outer(x,y), phi = 20, theta = 15, r = 
3, ltheta = -75,[] 
[876]
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 []\T1/pcr/m/n/9 ## now some "horizontal rays" (going from center to very left 
or very right):[] 
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 []    \T1/pcr/m/n/9 lines(trans3d(x=seq(x1, x2, by=0.5), y= -0.7, z = z, pmat 
= p, continuous = CNT),[] 
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 []\T1/pcr/m/n/9 doHor(-10,  0, z = -0.5, col = 2)  # x in [-10, 0] -- to the v
ery left : fine[] 
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 []\T1/pcr/m/n/9 doHor(-.5,  2, z = -0.52,col = 4) # x in [-0.5, 2] only {to th
e right} --> all fine[] 
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 []\T1/pcr/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 continuous=TRUE\TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 ):[] 
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 []\T1/pcr/m/n/10 windows(width, height, pointsize, record, rescale, xpinch, yp
inch, 
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 []\T1/pcr/m/n/10 win.metafile(filename = "", width = 7, height = 7, pointsize 
= 12,[] 
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 record[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 rescale[]\T1/ptm/m/n/10
 ,
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[]\T1/pcr/m/n/10 xpinch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 ypinch[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 canvas[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 gamma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 xpos[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 ypos[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 buffered[]\T1/
ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 restoreConsole[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 clickToConfi
rm[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 
fillOddEven []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/9 windows()  # make sure we have the right device type (availabl
e on Windows only)[] 
[884]
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[]\T1/ptm/m/n/10 The \T1/phv/m/n/10 R \T1/ptm/m/n/10 func-tion is a wrap-per fo
r two de-vices, one based on Xlib ([][]$\T1/pcr/m/n/10 https : / /
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\T1/pcr/m/n/10 en . wikipedia . org / wiki / Xlib$[][]\T1/ptm/m/n/10 ) and one 
us-ing cairo-graph-ics ([][]$\T1/pcr/m/n/10 https : / / www .
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 []    \T1/pcr/m/n/10 fonts, family, xpos, ypos, title, type, antialias, symbol
family)[] 
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/pcr/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
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[]\T1/ptm/m/n/10 Problems with in-cor-rect ren-der-ing of sym-bols (e.g., of []
\T1/pcr/m/n/10 quote(pi) []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 expression(10^degree)[]\T1/ptm/m/n/10 ) have been seen on Linu
x sys-tems which have the Wine
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[]\T1/pcr/m/n/10 type = "Xlib" []\T1/ptm/m/n/10 sup-ports `True-Color', `Pseu-d
o-Color', `GrayScale', []\T1/pcr/m/n/10 StaticGray []\T1/ptm/m/n/10 and
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 []        \T1/pcr/m/n/9 function(...) grDevices::X11.options(width = 8, height
 = 6, xpos = 0,[] 
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[]\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica" []\T1
/ptm/m/n/10 (the de-fault), []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10
 ,
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 []\T1/pcr/m/n/9 op <- options(warn = 2)# ==> warnings would be errors, we supp
ress the one "we know":[] 
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., []\T1/pcr/m/n/10
 number[i] []\T1/ptm/m/n/10 is the mul-ti-plic-ity of
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 []\T1/pcr/m/n/9 xy <- data.frame(x = round(sort(stats::rnorm(100))), y = stats
::rnorm(100))[] 
[895]
[896]) (./graphics-pkg.tex
Chapter 5.
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[]\T1/ptm/m/n/10 For a com-plete list of func-tions with in-di-vid-ual help pag
es, use []\T1/pcr/m/n/10 library(help =
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 []  \T1/pcr/m/n/10 gap.axis <- if(perpendicular(side, las)) 0.25 else 1[] 
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[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 at = NULL[]\T1/ptm/m/n/10 , pretty tick 
mark lo-ca-tions are com-puted in-ter-nally (the same way
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Overfull \hbox (47.58038pt too wide) in paragraph at lines 580--580
 []\T1/pcr/m/n/9 ## now shrink the window (in x- and y-direction) and observe t
he axis labels drawn[] 
[906]
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 []\T1/pcr/m/n/9 axis.Date(3, at = as.integer(as.Date("2023-04-01")), col.axis 
= "darkgreen")[] 
[907]
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 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.POSIXct("2022-10-01 00:01:30"), col.ax
is = "orange")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 717--717
 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.numeric(as.POSIXct("2022-10-01 00:00:3
0")) + 0.25,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 718--718
 []                \T1/pcr/m/n/9 col.axis = "forestgreen", col = "darkgreen", m
gp = c(3,2,0))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 724--724
 []\T1/pcr/m/n/9 plot(data.frame(HST, y = 1), xaxt = "n", xlab = "Hawaii Standa
rd Time (HST)")[] 
Underfull \hbox (badness 10000) in paragraph at lines 751--755
[]\T1/ptm/m/n/10 numeric vec-tor of length three, de-fault-ing to [][][]\T1/pcr
/m/n/10 par[][][]("xaxp") []\T1/ptm/m/n/10 or
Underfull \hbox (badness 3250) in paragraph at lines 751--755
[][][]\T1/pcr/m/n/10 par[][][]("yaxp") []\T1/ptm/m/n/10 de-pend-ing on the []\T
1/pcr/m/n/10 side []\T1/ptm/m/n/10 ar-gu-ment ([]\T1/pcr/m/n/10 par("xaxp") []\
T1/ptm/m/n/10 if
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 838--838
 []                 \T1/pcr/m/n/9 axp = c(get_axp(usr.i), n = 3), log = TRUE, n
intLog = 5))[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 875--875
 []        \T1/pcr/m/n/10 add = FALSE, ann = !add && par("ann"), args.legend = 
NULL, ...)[] 
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[911]
Underfull \hbox (badness 10000) in paragraph at lines 1020--1024
[][][]\T1/pcr/m/n/10 plot[][][](..., type = "h")[]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 dotchart[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 hist[][][] []\T1
/ptm/m/n/10 for bars of a \T1/ptm/m/it/10 con-tin-u-ous \T1/ptm/m/n/10 vari-abl
e.
[912]
Overfull \hbox (133.98029pt too wide) in paragraph at lines 1037--1037
 []        \T1/pcr/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1039--1039
 []\T1/pcr/m/n/9 (xt <- xtabs(Freq ~ Survived + Class + Sex, d.Titanic, subset 
= Age=="Adult"))[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 1041--1041
 []\T1/pcr/m/n/9 mosaicplot(xt[,,"Male"], main = "mosaicplot(Freq ~ Class + Sur
vived, *)", color=TRUE)[] 
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Overfull \hbox (31.3804pt too wide) in paragraph at lines 1324--1324
 []\T1/pcr/m/n/9 # *add* notches (somewhat funny here <--> warning "notches .. 
outside hinges"):[] 
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[919]
Underfull \hbox (badness 2503) in paragraph at lines 1486--1495
\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 horizontal []\T1/ptm/m/n/10 is false, and 
[]\T1/pcr/m/n/10 xlim []\T1/ptm/m/n/10 hor-i-zon-tally. []\T1/pcr/m/n/10 xaxt[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yaxt[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3375) in paragraph at lines 1521--1523
[]\T1/ptm/m/n/10 whisker line type (de-fault: []\T1/pcr/m/n/10 "dashed"[]\T1/pt
m/m/n/10 ),
[920]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1593--1593
 []\T1/pcr/m/n/9 boxplot(z,   col.axis = "skyblue3", main = "boxplot(*, col.axi
s=..,main=..)")[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1594--1594
 []\T1/pcr/m/n/9 plot(z[[1]], col.axis = "skyblue3", main =    "plot(*, col.axi
s=..,main=..)")[] 
[921]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1600--1600
 []\T1/pcr/m/n/9 splus <- list(boxwex = 0.4, staplewex = 1, outwex = 1, boxfill
 = "grey40",[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 1601--1601
 []              \T1/pcr/m/n/9 medlwd = 3, medcol = "white", whisklty = 3, outl
ty = 1, outpch = NA)[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1634--1634
 []  \T1/pcr/m/n/10 yaxlabels = NULL, xlim = NULL, ylim = c(0, 1), weights = NU
LL, ...)[] 
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[923]
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[926]
Underfull \hbox (badness 10000) in paragraph at lines 1907--1913
[][][]\T1/pcr/m/n/10 contourLines[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
filled.contour[][][] []\T1/ptm/m/n/10 for color-filled con-tours, [][][]\T1/pcr
/m/n/10 contourplot[][][] []\T1/ptm/m/n/10 (and
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1927--1927
 []\T1/pcr/m/n/9 contour(x, x, z, ylim = c(-6, 6), nlevels = 20, lty = 2, metho
d = "simple",[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 1939--1939
 []\T1/pcr/m/n/9 contour(z, levels=levs[-c(1,length(levs))], col = 1:5, lwd = 1
:3 *1.5, lty = 1:3)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1955--1955
 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1964--1964
 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
[927]
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 2049--2049
 []\T1/pcr/m/n/10 coplot(formula, data, given.values, panel = points, rows, col
umns, 
[929]
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Overfull \hbox (31.3804pt too wide) in paragraph at lines 2178--2178
 []\T1/pcr/m/n/9 coplot(lat ~ long | depth, data = quakes, given.values = given
.depth, rows = 1)[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2183--2183
 []\T1/pcr/m/n/9 coplot(ll.dm, data = quakes, number = c(4, 7), show.given = c(
TRUE, FALSE))[] 
[931]
[932]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 2357--2357
 []\T1/pcr/m/n/10 dotchart(x, labels = NULL, groups = NULL, gdata = NULL, offse
t = 1/8, 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 2358--2358
 []         \T1/pcr/m/n/10 ann = par("ann"), xaxt = par("xaxt"), frame.plot = T
RUE, log = "",[] 
[933]
Underfull \hbox (badness 1430) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/pcr/m/n/10 
"n" []\T1/ptm/m/n/10 to sup-press and see also
[934]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 2469--2469
 []               \T1/pcr/m/n/10 color.palette = function(n) hcl.colors(n, "YlO
rRd", rev = TRUE),[] 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 2471--2471
 []               \T1/pcr/m/n/10 plot.title, plot.axes, key.title, key.axes, ke
y.border = NULL,[] 
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[935]
Underfull \hbox (badness 7273) in paragraph at lines 2564--2568
[][][]\T1/pcr/m/n/10 contour[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 image
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 hcl.colors[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 gray.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 palette[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 contourplot[][][] []\T1/p
tm/m/n/10 and
[936]
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 2813--2813
 []\T1/pcr/m/n/9 ## maybe change the desired number of tick marks:  par(lab = c
(mx, my, 7))[] 
[940]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 2834--2834
 []\T1/pcr/m/n/9 plot(8:270, log="xy") ; grid() # at (1, 10, 100); if preferrin
g "all" grid lines:[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2861--2861
 []     \T1/pcr/m/n/10 density = NULL, angle = 45, col = "lightgray", border = 
NULL,[] 
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[942]
Underfull \hbox (badness 1226) in paragraph at lines 2988--2992
\T1/pcr/m/n/10 1)[]\T1/ptm/m/n/10 , they are the rel-a-tive fre-quen-cies []\T1
/pcr/m/n/10 counts/n []\T1/ptm/m/n/10 and in gen-eral sat-isfy
[943]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3041--3041
 []\T1/pcr/m/n/9 ## Extreme outliers; the "FD" rule would take very large numbe
r of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 breaks\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3045--3045
 []\T1/pcr/m/n/9 length(hh$breaks) ## typically 1 million -- though 1e6 was "a 
suggestion only"[] 
[944]
Underfull \hbox (badness 10000) in paragraph at lines 3107--3110
[][][]\T1/ptm/m/n/10 graphical pa-ram-e-ters[][][], or ar-gu-ments to [][][]\T1
/pcr/m/n/10 hist.default[][][] []\T1/ptm/m/n/10 such as
[945]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3158--3158
 []\T1/pcr/m/n/9 ## The default fuzz in hist.default()  "kills" this, with a "w
rong" message:[] 
[946]
[947]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3322--3322
 []\T1/pcr/m/n/9 identifyPch <- function(x, y = NULL, n = length(x), plot = FAL
SE, pch = 19, ...)[] 
Overfull \hbox (79.98035pt too wide) in paragraph at lines 3327--3327
 []        \T1/pcr/m/n/9 ans <- identify(x[!sel], y[!sel], labels = which(!sel)
, n = 1, plot = plot, ...)[] 
[948]
[949]
Underfull \hbox (badness 10000) in paragraph at lines 3469--3474
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 useRaster []\T1/ptm/m/n/10 is not spec-i-f
ied, raster im-ages are used when the
Underfull \hbox (badness 10000) in paragraph at lines 3469--3474
[][][]\T1/pcr/m/n/10 getOption[][][]("preferRaster") []\T1/ptm/m/n/10 is true, 
the grid is reg-u-lar and ei-ther
Underfull \hbox (badness 10000) in paragraph at lines 3469--3474
[][][]\T1/pcr/m/n/10 dev.capabilities[][][]("rasterImage")$rasterImage []\T1/pt
m/m/n/10 is []\T1/pcr/m/n/10 "yes" []\T1/ptm/m/n/10 or it is
Overfull \hbox (31.3804pt too wide) in paragraph at lines 3504--3504
 []\T1/pcr/m/n/9 # Visualize as matrix.  Need to transpose matrix and then flip
 it horizontally:[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 3506--3506
 []\T1/pcr/m/n/9 imageM <- function(m, grid = max(dim(m)) <= 25, asp = (nrow(m)
-1)/(ncol(m)-1), ...) {[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3509--3509
 []        \T1/pcr/m/n/9 axis(side, at=at, labels=as.character(j+1L), col="gray
", col.axis=1, ...)[] 
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[952]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3666--3666
 []\T1/pcr/m/n/9 barplot(yhist$counts, axes = FALSE, xlim = c(0, top), space = 
0, horiz = TRUE)[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 3685--3685
 []       \T1/pcr/m/n/10 box.lwd = par("lwd"), box.lty = par("lty"), box.col = 
par("fg"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3689--3689
 []       \T1/pcr/m/n/10 text.font = NULL, merge = do.lines && has.pch, trace =
 FALSE,[] 
[953]
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[955]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3874--3874
 []  \T1/pcr/m/n/9 text  (1, y.leg[i] - 0.1, paste("cex=", formatC(cexv[i])), c
ex = 0.8, adj = 0)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3875--3875
 []  \T1/pcr/m/n/9 legend(3, y.leg[i], leg.txt, pch = "sSvV", col = c(1, 3), ce
x = cexv[i])[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3879--3879
 []       \T1/pcr/m/n/9 cex = 1+(-1:2)/8, trace = TRUE)# trace: show computed l
engths & coords[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3889--3889
 []  \T1/pcr/m/n/9 title("legend(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 top\TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 , lty = c(2, -1, 1), pch = c(NA, 3, 4), merge = TRUE)",[] 
[956]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3920--3920
 []                      \T1/pcr/m/n/9 "text(c(3,3),2:3,\"c(rect(...)\")"), adj
 = c(0, 0.3))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3946--3946
 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Filled\TS1/pcr/m/n/9 ' \T1/pc
r/m/n/9 boxes -- see also example(barplot) which may call legend(*, fill=)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3948--3948
 []\T1/pcr/m/n/9 legend("topright", rownames(VADeaths), fill = gray.colors(nrow
(VADeaths)))[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[957]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3959--3959
 []\T1/pcr/m/n/9 legend("bottomright", paste("sin(", 1:7, "pi * x)"), col = 1:7
, lty = 1:7,[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3974--3974
 []\T1/pcr/m/n/9 legend(.4,1, "sin(c x)", pch = 21, pt.bg = "white", lty = 1, c
ol = "blue")[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3982--3982
 []\T1/pcr/m/n/9 legend("topleft",     "(x,y)", pch=1, title= "topleft, inset =
 .05", inset = .05)[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3984--3984
 []\T1/pcr/m/n/9 legend("topright",    "(x,y)", pch=1, title= "topright, inset 
= .02",inset = .02)[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3992--3992
 []   \T1/pcr/m/n/9 plot(1, type = "n", axes = FALSE, ann = FALSE); title(paste
("text.font =",i))[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4002--4002
 []\T1/pcr/m/n/9 legend("bottomleft", c("This legend", "has", "optimally sized"
, "columns."),[] 
[958]
Underfull \hbox (badness 10000) in paragraph at lines 4064--4068
[][][]\T1/pcr/m/n/10 lines.formula[][][] []\T1/ptm/m/n/10 for the for-mula meth
od; [][][]\T1/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , par-tic-u-larly for []\
T1/pcr/m/n/10 type %in%
[959]
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Overfull \hbox (6.78088pt too wide) in paragraph at lines 4176--4176
 []        \T1/pcr/m/n/10 log = "", ..., add = FALSE, verbose = getOption("verb
ose"))[] 
[961]
[962]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 4330--4330
 []\T1/pcr/m/n/9 nd <- length(dv <- seq(as.Date("1959-02-21"), by = "weeks", le
ngth.out = 100))[] 
[963]
Underfull \hbox (badness 3930) in paragraph at lines 4409--4411
[]\T1/ptm/m/n/10 The mag-ni-fi-ca-tion to be used for axis an-no-ta-tion, as a 
mul-ti-ple of
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[967]
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Underfull \hbox (badness 1286) in paragraph at lines 4725--4728
[]\T1/ptm/m/n/10 which draws the ti-tle. You may want to spec-ify []\T1/pcr/m/n
/10 oma []\T1/ptm/m/n/10 when chang-ing
Underfull \hbox (badness 3229) in paragraph at lines 4733--4738
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[969]
[970]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4829--4829
 []\T1/pcr/m/n/9 pairs(USJudgeRatings, lower.panel = panel.smooth, upper.panel 
= panel.cor,[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4834--4834
 []      \T1/pcr/m/n/9 main = "Lengths and Widths in [log]", line.main=1.5, oma
=c(2,2,3,2))[] 
[971]
[972]
Underfull \hbox (badness 1264) in paragraph at lines 5096--5109
\T1/ptm/m/n/10 func-tions such as [][][]\T1/pcr/m/n/10 plot.default[][][][]\T1/
ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.window[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lines[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 abline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 axis[][][][]\T1/ptm/m/n/10 ,
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[976 </builddir/build/BUILD/R-4.4.3/library/graphics/help/figures/mai.pdf>]
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[977 </builddir/build/BUILD/R-4.4.3/library/graphics/help/figures/oma.pdf>]
[978]
[979]
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 []\T1/pcr/m/n/9 c(prof.pilots = 16, lawyers = 11, farmers = 10, salesmen = 9, 
physicians = 9,[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5673--5673
 []  \T1/pcr/m/n/9 mechanics = 6, policemen = 6, managers = 6, engineers = 5, t
eachers = 4,[] 
[980]
[981]
[982]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5890--5890
 []\T1/pcr/m/n/9 points(trans3d(xy[,1], xy[,2], z = 6,          pmat = res), co
l = 2, pch = 16)[] 
[983]
[984]
[985]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6037--6037
 []\T1/pcr/m/n/9 pie(c(Sky = 78, "Sunny side of pyramid" = 17, "Shady side of p
yramid" = 5),[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 6038--6038
 []    \T1/pcr/m/n/9 init.angle = 315, col = c("deepskyblue", "yellow", "yellow
3"), border = FALSE)[] 
[986]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6097 \aliasA{plot}{plot.default}{plot}
                                        
[987]
[988]
[989]
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[991]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6427--6427
 []\T1/pcr/m/n/9 plot(weight ~ group, data = PlantGrowth)           # numeric v
ector ~ factor[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6433--6433
 []\T1/pcr/m/n/9 plot(PlantGrowth$group, axes = FALSE, main = "no axes")  # ext
remely silly[] 
[992]
[993]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 6557--6557
 []               \T1/pcr/m/n/10 main = paste("Histogram of", paste(x$xname, co
llapse = "\n")),[] 
[994]
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[996]
[997]
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[]\T1/ptm/m/n/10 background (fill) color for the open plot sym-bols 21:25: see
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[999]
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[]\T1/ptm/m/n/10 character (or sym-bol) ex-pan-sion: a nu-mer-i-cal vec-tor. Th
is works as a mul-ti-ple of
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[][] 
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lue", cex = .6,[] 
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[]\T1/ptm/m/n/10 The code im-ple-ment-ing poly-gon shad-ing was do-nated by Kev
in Buhr
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 []\T1/pcr/m/n/9 yy <- c(c(0, cumsum(stats::rnorm(n))), rev(c(0, cumsum(stats::
rnorm(n)))))[] 
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[]\T1/ptm/m/n/10 character value spec-i-fy-ing the path fill mode: ei-ther []\T
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ace = "Lab")[] 
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h obs.number):[] 
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 number[i] == 1[]\T1/ptm/m/n/10 , a (sligh
tly en-larged) usual plot-ting sym-bol ([]\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 ) 
is drawn. For
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 []     \T1/pcr/m/n/9 "Le fran�ais, c\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 est facile: 
R�gles, Libert�, Egalit�, Fraternit�...")[] 
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[]\T1/ptm/m/n/10 The po-si-tions of []\T1/pcr/m/n/10 xlab[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sub []\T1/ptm/m/n/10 a
re []\T1/pcr/m/n/10 line []\T1/ptm/m/n/10 (de-fault for []\T1/pcr/m/n/10 xlab [
]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 be-ing
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[]\T1/ptm/m/n/10 vectors con-tain-ing the co-or-di-nates of the ver-tices of th
e poly-gon. See
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[1037]) (./grid-pkg.tex
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Chapter 6.
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[]\T1/ptm/m/n/10 Modification of the view-port (should all be valid ar-gu-ments
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a cir-cle grob (a graph-i-cal ob-ject 
de-scrib-ing a cir-cle), but only
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ck"), name="r1")[] 
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[]\T1/ptm/m/n/10 The meth-ods for grob and gTree call the generic hook func-tio
ns []\T1/pcr/m/n/10 preDrawDetails[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions call []\T1/pcr/m/n/10 editDetails []\T1/ptm/m/
n/10 to al-low a grob to per-form cus-tom ac-tions and
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a frame grob (a graph-i-cal ob-ject de
-scrib-ing a frame), but only
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[]\T1/ptm/m/n/10 The jus-ti-fi-ca-tion of the glyphs rel-a-tive to the ([]\T1/p
cr/m/n/10 x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) lo-ca-tion. 
Can be
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Another pos-si-ble use of []\T1/pcr/m/n/10 grid.group() []\T1/
ptm/m/n/10 is to spec-ify both []\T1/pcr/m/n/10 src []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 dst []\T1/ptm/m/n/10 and com-bine
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[]\T1/pcr/m/n/10 "multiply"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "screen"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "overlay"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "darke
n"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lighten"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
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 []  \T1/pcr/m/n/9 mask <- as.mask(rectGrob(gp=gpar(col=NA, fill="grey50")), ty
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[]\T1/ptm/m/n/10 There are two hooks called []\T1/pcr/m/n/10 "before.grid.newpa
ge" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "grid.newpage" []\T1/ptm/m/n/10 (see
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i-clockwise")[] 
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anti-clockwise")[] 
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 []\T1/pcr/m/n/9 # Not specifying pathId will treat all points as part of the s
ame path, thus[] 
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 gridCoords []\T1/ptm/m/n/10 a nu-meric ve
c-tor. For []\T1/pcr/m/n/10 gridGrobCoords []\T1/ptm/m/n/10 a list
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\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 "GridCoords" []\T1/ptm/m/n/10 ob-jects. For 
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[]\T1/ptm/m/n/10 Either a []\T1/pcr/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 an
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 grid.legend()[]\T1/ptm/m/n/10 : all the a
r-gu-ments above are passed to
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[]\T1/ptm/m/n/10 This func-tion can be used to gen-er-ate a view-port path for 
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[][][]\T1/pcr/m/n/10 viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 push
Viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 popViewport[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 seekViewport[][][][]\T1/ptm/m/n/10 ,
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Chapter 7.
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[][][]\T1/pcr/m/n/10 GroupGenericFunctions[][][] []\T1/ptm/m/n/10 for other in-
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 []\T1/pcr/m/n/9 ## vector.  The next method will always be the default, usuall
y a primitive.[] 
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ith no arguments[] 
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e default method[] 
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 []\T1/pcr/m/n/9 ## Although the argument here is numeric, it\TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 s still the "B0" method that\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s called[
] 
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 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i), sum(1:10, 1+1i))) # the "N
umber" method[] 
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 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i, TRUE), c(1:10, 1+1i, TRUE))
) # the default[] 
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/pcr/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/pcr/m/n/10 where =
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[]\T1/ptm/m/n/10 To see the ac-tual ta-ble (an [][][]\T1/pcr/m/n/10 environment
[][][][]\T1/ptm/m/n/10 ) used for meth-ods dis-patch, call
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/pcr/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 Object of class []\T1/pcr/m/n/10 "optionalMethod" []\T1/ptm/m/
n/10 (a union of classes []\T1/pcr/m/n/10 "function" []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/10 removeMethods(f, where = topenv(parent.frame()), all = missin
g(where))[] 
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 []\T1/pcr/m/n/9 ## get the function "myFun" -- throw an error if 0 or > 1 vers
ions visible:[] 
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[]\T1/ptm/m/n/10 Function []\T1/pcr/m/n/10 implicitGeneric() []\T1/ptm/m/n/10 r
e-turns the im-plicit generic ver-sion,
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[]\T1/pcr/m/n/10 setGenericImplicit() []\T1/ptm/m/n/10 turns a generic im-plici
t, []\T1/pcr/m/n/10 prohibitGeneric() []\T1/ptm/m/n/10 pre-vents
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[]\T1/ptm/m/n/10 For a class (or class def-i-ni-tion, see [][][]\T1/pcr/m/n/10 
getClass[][][] []\T1/ptm/m/n/10 and the de-scrip-tion of class
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[]
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[] \T1/pcr/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude =
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[]\T1/pcr/m/n/10 setMethod("plot", c("Pos", "missing"), function(x, y, ...) {
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[]\T1/pcr/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
,
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[]\T1/ptm/m/n/10 A call to [][][]\T1/pcr/m/n/10 selectSuperClasses[][][](cl) []
\T1/ptm/m/n/10 re-turns a list of su-per-classes, sim-i-larly to
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 []\T1/pcr/m/n/10 makeClassRepresentation(name, slots=list(), superClasses=char
acter(), 
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 []                        \T1/pcr/m/n/10 prototype=NULL, package, validity, ac
cess,[] 
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 []\T1/pcr/m/n/10 method.skeleton(generic, signature, file, external = FALSE, w
here) 
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[]\T1/ptm/m/n/10 For ad-di-tional in-for-ma-tion see doc-u-men-ta-tion for the 
im-por-tant steps: ([][][]\T1/pcr/m/n/10 setMethod[][][]()[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 In prin-ci-ple, a generic func-tion could be any func-tion tha
t eval-u-ates a call to
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 []\T1/pcr/m/n/9 f3 <- function(x)UseMethod("f3") # an S3 generic to illustrate
 inheritance[] 
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 []\T1/pcr/m/n/9 stopifnot(identical(abs(y), abs(x))) # (version 2.9.0 or earli
er fails here)[] 
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 []\T1/pcr/m/n/9 ## The S3 method for classA and the closest inherited S3 metho
d for classB[] 
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[]\T1/pcr/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...)
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 $initialize() []\T1/p
tm/m/n/10 is equiv-a-lent to in-vok-ing the method
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[]\T1/ptm/m/n/10 Typically, a spe-cial-ized []\T1/pcr/m/n/10 $initialize() []\T
1/ptm/m/n/10 method car-ries out its own com-pu-ta-tions,
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\T1/ptm/m/n/10 then in-vokes []\T1/pcr/m/n/10 $initFields() []\T1/ptm/m/n/10 to
 per-form stan-dard ini-tial-iza-tion, as shown in the
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[]\T1/ptm/m/n/10 This method is equiv-a-lent to call-ing the gen-er-a-tor func-
tion re-turned by
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[]\T1/ptm/m/n/10 Reference classes can have va-lid-ity meth-ods in the same sen
se as any S4 class (see
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[][][]\T1/pcr/m/n/10 setValidity[][][][]\T1/ptm/m/n/10 ). Such meth-ods are of-
ten a good idea; they will be called by call-ing
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
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 []\T1/pcr/m/n/10 ## Create a new object from the class or use the replacement 
version of as().[] 
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 []\T1/pcr/m/n/9 fit <- lm(sepal ~ Petal.Length + Petal.Width + Species, data =
 datasets::iris)[] 
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 []\T1/pcr/m/n/9 myReg <- setClass("myReg", slots = c(title = "character"), con
tains = "mlm")[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7232 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7235 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
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<to be read again> 
                   \relax 
l.7238 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
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[]\T1/pcr/m/n/10 "abs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sign"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "sqrt"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ceiling"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "floor"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trunc"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cummax"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "acosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "asin"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "asinh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "atan"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "atanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "exp"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expm1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "c
os"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "cosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cospi"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "sin"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sinh"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "sinpi"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tan"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanp
i"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 name of the class or (more ef-fi-ciently) the class def-i-ni-t
ion ob-ject (see
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[]\T1/ptm/m/n/10 The typ-i-cal user level func-tion is []\T1/pcr/m/n/10 selectS
uperClasses() []\T1/ptm/m/n/10 which calls
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 []\T1/pcr/m/n/9 selectSuperClasses("C", dropVirtual=TRUE, directOnly=FALSE)# d
itto w/o "Root"[] 
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 []\T1/pcr/m/n/10 setGroupGeneric(name, def= , group=list(), valueClass=charact
er(), 
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 []      \T1/pcr/m/n/10 by = character(), where = topenv(parent.frame()), class
Def =,[] 
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 []\T1/pcr/m/n/9 ## "trackMultiCurve", by making the y, smooth slots into 1-col
umn matrices[] 
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 []  \T1/pcr/m/n/9 setLoadAction(function(ns) assign("myCount", 0, envir = ns),
 "setCount")[] 
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 []\T1/pcr/m/n/9 ## Using a short form for the signature, which matches like fo
rmal arguments[] 
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 []\T1/pcr/m/n/9 ## Define a new generic function to compute the residual degre
es of freedom[] 
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/pcr/m/n/10 https : / / johnmchambers . su .
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[]\T1/ptm/m/n/10 Object of the orig-i-nal class; e.g., []\T1/pcr/m/n/10 "functi
on" []\T1/ptm/m/n/10 for class
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
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[]\T1/pcr/m/n/10 "functionWithTrace" []\T1/ptm/m/n/10 ex-tends []\T1/pcr/m/n/10
 "function"[]\T1/ptm/m/n/10 . Each of the spe-cific classes ex-tends
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[1302]) (./parallel-pkg.tex
Chapter 8.
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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/p
cr/m/n/10 "L\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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[]\T1/ptm/m/n/10 a vec-tor for []\T1/pcr/m/n/10 clusterApply []\T1/ptm/m/n/10 a
nd []\T1/pcr/m/n/10 clusterApplyLB[]\T1/ptm/m/n/10 , a ma-trix for
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[]\T1/ptm/m/n/10 Two ex-cep-tions: []\T1/pcr/m/n/10 parLapply []\T1/ptm/m/n/10 
has ar-gu-ment []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 not []\T1/pcr/m/n/10 x []\T1
/ptm/m/n/10 for con-sis-tency with [][][]\T1/pcr/m/n/10 lapply[][][][]\T1/ptm/m
/n/10 , and
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
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[]\T1/ptm/m/n/10 Character vec-tor of ad-di-tional ar-gu-ments for []\T1/pcr/m/
n/10 Rscript []\T1/ptm/m/n/10 such as
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[]\T1/pcr/m/n/10 mcfork []\T1/ptm/m/n/10 re-turns an ob-ject of the class []\T1
/pcr/m/n/10 "childProcess" []\T1/ptm/m/n/10 to the mas-ter and of class
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[]\T1/pcr/m/n/10 "masterProcess" []\T1/ptm/m/n/10 to the child: both the classe
s in-herit from class []\T1/pcr/m/n/10 "process"[]\T1/ptm/m/n/10 . If
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 []         \T1/pcr/m/n/10 mc.cleanup = TRUE, mc.allow.recursive = TRUE, affini
ty.list = NULL)[] 
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 []\T1/pcr/m/n/9 mclapply(list(A, A, A), first, mc.preschedule = FALSE, affinit
y.list = affL)[] 
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 []\T1/pcr/m/n/9 # To optimize the overall execution time elements of X are sch
eduled to suitable CPUs[] 
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[]\T1/pcr/m/n/10 mcparallel []\T1/ptm/m/n/10 re-turns an ob-ject of the class [
]\T1/pcr/m/n/10 "parallelJob" []\T1/ptm/m/n/10 which in-her-its from
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[]\T1/ptm/m/n/10 The be-haviour with []\T1/pcr/m/n/10 mc.set.seed = TRUE []\T1/
ptm/m/n/10 is dif-fer-ent only if
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 []\T1/pcr/m/n/9 mccollect(p, wait = FALSE, 10) # will retrieve the result (sin
ce it\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s fast)[] 
[1321]
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 []                 \T1/pcr/m/n/9 as.integer(runif(N, 1, 12)), as.integer(runif
(N, 1, 28)))[] 
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 []\T1/pcr/m/n/9 system.time(c <- unlist(mclapply(dates, as.POSIXct,  format = 
"%Y-%m-%d")))[] 
Underfull \hbox (badness 1577) in paragraph at lines 1400--1403
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/pcr/m/n/10 
.Random.seed []\T1/ptm/m/n/10 when the
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 nextRNGStream []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 nextRNGSubStream[]\T1/ptm/m/n/10 , a value which can be as-signed to
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[1325]) (./splines-pkg.tex
[1326]
Chapter 9.
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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/pcr/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
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 []\T1/pcr/m/n/9 ispl <- polySpline(interpSpline( weight ~ height,  women, bSpl
ine = TRUE))[] 
[1335]
Underfull \hbox (badness 1043) in paragraph at lines 599--601
[]\T1/ptm/m/n/10 An in-te-ger be-tween 0 and []\T1/pcr/m/n/10 splineOrder(objec
t) - 1 []\T1/ptm/m/n/10 spec-i-fy-ing the
[1336]
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Overfull \hbox (25.98041pt too wide) in paragraph at lines 713--713
 []\T1/pcr/m/n/9 Matrix::drop0(zapsmall(6*splineDesign(knots = 1:40, x = 4:37, 
sparse = TRUE)))[] 
[1338]
[1339]
[1340]) (./stats-pkg.tex
Chapter 10.
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[]\T1/pcr/m/n/10 .MFclass() []\T1/ptm/m/n/10 re-turns a char-ac-ter string, one
 of []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ordered"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "factor"[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 (xl <- .getXlevels(terms(mf), mf)) # a list with one entry " $
 Species" with 3 levels:[] 
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 []  \T1/pcr/m/n/9 identical(.getXlevels(terms(mc), mc), xl[0]) # a empty named
 list, as no factors[] 
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 []\T1/pcr/m/n/9 add1(glm.D93, scope = ~outcome*treatment, test = "Rao") ## Pea
rson Chi-square[] 
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 []\T1/pcr/m/n/10 addmargins(A, margin = seq_along(dim(A)), FUN = sum, quiet = 
FALSE) 
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/pcr/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
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 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
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 []                 \T1/pcr/m/n/9 approx(xn, yn, xout=xout, method=M, rule=R, n
a.rm=na.)$y),[] 
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 []\T1/pcr/m/n/9 (amy <- approx(x, y, xout = x)$y) # warning, can be avoided by
 specifying \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ties=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[
] 
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 []\T1/pcr/m/n/10 ARMAacf(ar = numeric(), ma = numeric(), lag.max = r, pacf = F
ALSE) 
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 []\T1/pcr/m/n/9 lines(ave(breaks, wool, tension, FUN = median), type = "s", co
l = "green")[] 
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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Bartlett test of homo
geneity of
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 []\T1/pcr/m/n/10 pbeta(q, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
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 []\T1/pcr/m/n/10 qbeta(p, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
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Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3674.
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 []\T1/pcr/m/n/9 plot (k, dbinom(k, n, pi/10, log = TRUE), type = "l", ylab = "
log density",[] 
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 []\T1/pcr/m/n/10 Box.test(x, lag = 1, type = c("Box-Pierce", "Ljung-Box"), fit
df = 0) 
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 []\T1/pcr/m/n/10 pcauchy(q, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
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 []\T1/pcr/m/n/10 qcauchy(p, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
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 []\T1/pcr/m/n/9 chisq.test(x, p = p)            #               maybe doubtful
, but is ok![] 
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 []  \T1/pcr/m/n/9 plot(pp, sort(pchisq(rr <- rchisq(n, df = df, ncp = L), df =
 df, ncp = L)),[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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 []\T1/pcr/m/n/10 confint(object, parm, level = 0.95, trace = FALSE, test=c("LR
T", "Rao"), ...)[] 
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 []\T1/pcr/m/n/9 constrOptim(c(-1.2,0.9), fr, grr, ui = rbind(c(-1,0), c(0,-1))
, ci = c(-1,-1))[] 
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 []\T1/pcr/m/n/9 constrOptim(c(.5,0), fr, grr, ui = rbind(c(-1,0), c(1,-1)), ci
 = c(-0.9,0.1))[] 
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 []\T1/pcr/m/n/9 ## using sparse contrasts: % useful, once model.matrix() works
 with these :[] 
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 []\T1/pcr/m/n/10 convolve(x, y, conj = TRUE, type = c("circular", "open", "fil
ter")) 
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter string giv-ing a method for com-put-i
ng co-vari-ances
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\T1/ptm/m/n/10 in the pres-ence of miss-ing val-ues. This must be (an ab-bre-vi
-a-tion of)
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\T1/ptm/m/n/10 one of the strings []\T1/pcr/m/n/10 "everything"[]\T1/ptm/m/n/10
 , []\T1/pcr/m/n/10 "all.obs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "complete.obs"
[]\T1/ptm/m/n/10 ,
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 []         \T1/pcr/m/n/10 exact = NULL, conf.level = 0.95, continuity = FALSE,
 ...)[] 
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 []\T1/pcr/m/n/10 cov.wt(x, wt = rep(1/nrow(x), nrow(x)), cor = FALSE, center =
 TRUE, 
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 []\T1/pcr/m/n/10 decompose(x, type = c("additive", "multiplicative"), filter =
 NULL) 
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 []\T1/pcr/m/n/10 reformulate(termlabels, response = NULL, intercept = TRUE, en
v = parent.frame())[] 
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if a box around the plot should be drawn
, see
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[]\T1/ptm/m/n/10 Objects of class []\T1/pcr/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/pcr/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing 
method
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[]\T1/pcr/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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\T1/ptm/m/n/10 has []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y [
]\T1/ptm/m/n/10 (and op-tional fur-ther ar-gu-ments) as branches. Note that be-
fore \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.1.2,
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[][][]\T1/pcr/m/n/10 dendrapply[][][] []\T1/ptm/m/n/10 for ap-ply-ing a func-ti
on to \T1/ptm/m/it/10 each \T1/ptm/m/n/10 node. [][][]\T1/pcr/m/n/10 order.dend
rogram[][][] []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/9 str(dend1, max.level = 2, last.str =  "\TS1/pcr/m/n/9 '\T1/pcr
/m/n/9 ") # only the first two sub-levels[] 
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 []\T1/pcr/m/n/9 plot(dend2$lower[[3]], nodePar = list(col = 4), horiz = TRUE, 
type = "tr")[] 
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 []\T1/pcr/m/n/9 ## merge() all parts back (using default \TS1/pcr/m/n/9 '\T1/p
cr/m/n/9 height\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 instead of original one):[] 
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 []\T1/pcr/m/n/9 plot(d3, nodePar= nP, edgePar = list(col = "gray", lwd = 2), h
oriz = TRUE)[] 
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 []\T1/pcr/m/n/9 abline(h = 1/1022, v = range(x), lty=2); axis(2, at=1/1022, "1
/(2n-2)", las=1)[] 
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 []                     \T1/pcr/m/n/9 function(k) density(kernel = k, give.Rker
n = TRUE))))[] 
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[]\T1/pcr/m/n/10 "maximum"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "manhattan"[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 "canberra"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "bi
nary" []\T1/ptm/m/n/10 or
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/pcr/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/pcr/m/n/10 ht
tps : / / CRAN . R-[]project . org / view =
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[]\T1/ptm/m/n/10 Each row of the re-sult-ing ma-trix con-sists of se-quences []
\T1/pcr/m/n/10 x[t][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 x[t-1][]\T1/ptm/m/n/10 ,
 ...,
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[]\T1/ptm/m/n/10 Components of []\T1/pcr/m/n/10 control []\T1/ptm/m/n/10 can al
so be sup-plied as named ar-gu-ments to
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 []\T1/pcr/m/n/9 glm.qD93 <- glm(counts ~ outcome + treatment, d.AD, family = q
uasipoisson())[] 
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 []\T1/pcr/m/n/9 ## Not run: glm(y ~ x, family = quasi(variance = "mu^3", link 
= "log")) # fails[] 
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 []\T1/pcr/m/n/9 glm(y ~ x, family = quasi(variance = "mu(1-mu)", link = "logit
"), start = c(0,1))[] 
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 []           \T1/pcr/m/n/9 dimnames = list(income = c("< 15k", "15-25k", "25-4
0k", "> 40k"),[] 
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 []                     \T1/pcr/m/n/9 satisfaction = c("VeryD", "LittleD", "Mod
erateS", "VeryS")))[] 
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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Fligner-Killeen test 
of homogeneity of
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[][][]\T1/pcr/m/n/10 ftable.formula[][][] []\T1/ptm/m/n/10 for the for-mula in-
ter-face (which al-lows a []\T1/pcr/m/n/10 data = . []\T1/ptm/m/n/10 ar-gu-ment
);
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[]\T1/ptm/m/n/10 See also [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or
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 []    \T1/pcr/m/n/10 x = FALSE, y = TRUE, singular.ok = TRUE, contrasts = NULL
, ...)[] 
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 the method to be used in fit-ting the model. The de-fault meth
od
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[]\T1/ptm/m/n/10 A spec-i-fi-ca-tion of the form []\T1/pcr/m/n/10 first:second 
[]\T1/ptm/m/n/10 in-di-cates the set of terms ob-tained by tak-
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[]\T1/ptm/m/n/10 The generic ac-ces-sor func-tions [][][]\T1/pcr/m/n/10 coeffic
ients[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 effects[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 fitted.values []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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[][][]\T1/pcr/m/n/10 glm[][][] []\T1/ptm/m/n/10 for com-put-ing []\T1/pcr/m/n/1
0 glm.obj[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 anova.glm[][][][]\T1/ptm/m/n/1
0 ; the cor-re-spond-ing \T1/ptm/m/it/10 generic \T1/ptm/m/n/10 func-tions,
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[]\T1/pcr/m/n/10 "average" []\T1/ptm/m/n/10 (= UP-GMA), []\T1/pcr/m/n/10 "mcqui
tty" []\T1/ptm/m/n/10 (= WPGMA), []\T1/pcr/m/n/10 "median" []\T1/ptm/m/n/10 (=
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\T1/ptm/m/n/10 There are [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/n/10 , [][
][]\T1/pcr/m/n/10 plot[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 identify []\
T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 identify.hclust[][][][]\T1/ptm/m/n/10 )
 meth-ods and the
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
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 []\T1/pcr/m/n/9 heatmap(Ca, Rowv = FALSE, symm = TRUE, RowSideColors = cc, Col
SideColors = cc,[] 
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 []            \T1/pcr/m/n/10 optim.start = c(alpha = 0.3, beta = 0.1, gamma = 
0.1),[] 
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[]\T1/ptm/m/n/10 Character string to se-lect an []\T1/pcr/m/n/10 "additive" []\
T1/ptm/m/n/10 (the de-fault) or
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 []\T1/pcr/m/n/9 identify(hci, function(k) barplot(table(iris[k,5]), col = 2:4)
, DEV.FUN = nD)[] 
[1519]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12050 \aliasA{hat}{influence.measures}{hat}
                                             
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 []\T1/pcr/m/n/10 cooks.distance(model, infl = lm.influence(model, do.coef = FA
LSE),[] 
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 []\T1/pcr/m/n/10 hatvalues(model, infl = lm.influence(model, do.coef = FALSE),
 ...)[] 
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[]\T1/ptm/m/n/10 The op-tional []\T1/pcr/m/n/10 infl[]\T1/ptm/m/n/10 , []\T1/pc
r/m/n/10 res []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sd []\T1/ptm/m/n/10 ar-gu-me
nts are there to en-cour-age the use of these di-
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[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists 
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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 []                 \T1/pcr/m/n/10 type = c("l", "p", "b", "o", "c"), legend = 
TRUE,[] 
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 []                 \T1/pcr/m/n/10 trace.label = deparse1(substitute(trace.fact
or)),[] 
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/pcr/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 SSinit =
Underfull \hbox (badness 4739) in paragraph at lines 12805--12807
[]\T1/ptm/m/n/10 the es-ti-mate at time $\OML/cmm/m/it/10 t \OMS/cmsy/m/n/10 ^^
@ \OT1/cmr/m/n/10 1$ \T1/ptm/m/n/10 of the state un-cer-tainty ma-trix $\OML/cm
m/m/it/10 Q$ \T1/ptm/m/n/10 (not up-dated by
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[]\T1/ptm/m/n/10 an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of class []\T1/pcr/
m/n/10 "kmeans"[]\T1/ptm/m/n/10 , typ-i-cally the re-sult []\T1/pcr/m/n/10 ob [
]\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 ob <-
Underfull \hbox (badness 2894) in paragraph at lines 13124--13128
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
Underfull \hbox (badness 1038) in paragraph at lines 13124--13128
\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 "Hartigan-Wong"[]\T1/ptm/m/n/10 ): if pos-i-ti
ve (or true), trac-ing in-for-ma-tion on the
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Underfull \hbox (badness 1496) in paragraph at lines 13552--13558
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 13807--13807
 []\T1/pcr/m/n/9 lag.plot(sqrt(sunspots), set.lags = c(1:4, 9:12), pch = ".", c
ol = "gold")[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 13907--13907
 []\T1/pcr/m/n/9 dimnames(cAS) <- list(paste("it =", format(1:10)), c("intercep
t", "slope"))[] 
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Underfull \hbox (badness 4518) in paragraph at lines 13955--13960
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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Underfull \hbox (badness 10000) in paragraph at lines 14155--14159
[]\T1/ptm/m/n/10 More []\T1/pcr/m/n/10 lm() []\T1/ptm/m/n/10 ex-am-ples are ava
il-able e.g., in [][][]\T1/pcr/m/n/10 anscombe[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 attitude[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 freeny[][][]
[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 1163) in paragraph at lines 14497--14505
\T1/ptm/m/n/10 els, [][][]\T1/pcr/m/n/10 influence[][][] []\T1/ptm/m/n/10 (etc 
on that page) for re-gres-sion di-ag-nos-tics, [][][]\T1/pcr/m/n/10 weighted.re
siduals[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 4518) in paragraph at lines 14617--14622
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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 []\T1/pcr/m/n/10 plogis(q, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 14808--14808
 []\T1/pcr/m/n/10 qlogis(p, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
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 []\T1/pcr/m/n/10 plnorm(q, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 15153--15153
 []\T1/pcr/m/n/10 qlnorm(p, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
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 []\T1/pcr/m/n/10 lowess(x, y = NULL, f = 2/3, iter = 3, delta = 0.01 * diff(ra
nge(x))) 
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Underfull \hbox (badness 2726) in paragraph at lines 15655--15658
[]\T1/ptm/m/n/10 character; one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cauchit"[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 "cloglog"[]\T1/ptm/m/n/10 ,
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 15749--15749
 []\T1/pcr/m/n/9 stopifnot(all.equal(pfm, pf2)) ## was off (rel.diff. 0.0766) i
n R <= 3.5.0[] 
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 []\T1/pcr/m/n/9 a <- model.frame(cbind(ncases,ncontrols) ~ agegp + tobgp + alc
gp, data = esoph) 
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Underfull \hbox (badness 1490) in paragraph at lines 16528--16533
\T1/ptm/m/n/10 those spec-i-fied in []\T1/pcr/m/n/10 ... []\T1/ptm/m/n/10 which
 are re-cy-cled to the num-ber of data frame rows. Un-like
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 16564--16564
 []\T1/pcr/m/n/9 model.frame(dist ~ speed, data = cars, subset = speed < 10, z 
= log(dist))[] 
Underfull \hbox (badness 1648) in paragraph at lines 16600--16602
[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
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 []\T1/pcr/m/n/9 model.matrix(~ a + b, dd, contrasts.arg = list(a = "contr.sum"
, b = contr.poly))[] 
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 []\T1/pcr/m/n/9 m.orth <- model.matrix(~a+b, dd, contrasts.arg = list(a = "con
tr.helmert"))[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 17241--17241
 []\T1/pcr/m/n/9 stopifnot(all(na.omit(1:3) == 1:3))  # does not affect objects
 with no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] 
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 []\T1/pcr/m/n/9 persp(x, size, dnb <- outer(x, size, function(x,s) dnbinom(x, 
s, prob = 0.4)),[] 
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Underfull \vbox (badness 10000) has occurred while \output is active
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Overfull \hbox (42.18039pt too wide) in paragraph at lines 18194--18194
 []\T1/pcr/m/n/9 ## adjusting the convergence test by adding \TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 scaleOffset\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 to its denominator RSS:[]
 
Underfull \vbox (badness 10000) has occurred while \output is active
[1611]
Overfull \hbox (74.58035pt too wide) in paragraph at lines 18213--18213
 []\T1/pcr/m/n/9 ## Here, requiring close convergence, must use more accurate n
umerical differentiation,[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 18214--18214
 []\T1/pcr/m/n/9 ## as this typically gives Error: "step factor .. reduced belo
w \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 minFactor\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 .."[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 18218--18218
 []\T1/pcr/m/n/9 ## central differencing works here typically (PR#18165: not co
nverging on *some*):[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 18219--18219
 []\T1/pcr/m/n/9 ctr2 <- nls.control(nDcentral=TRUE, tol = 8e-8, # <- even smal
ler than above[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 18222--18222
 []        \T1/pcr/m/n/9 (grepl("^aarch64.*linux", R.version$platform) && grepl
("^NixOS", osVersion)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 18254--18254
 []              \T1/pcr/m/n/9 start = list(a = rep(b[2], 21), b = rep(b[3], 21
), th = b[1]))[] 
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 []\T1/pcr/m/n/9 DN.srt <- sortedXyData(expression(log(conc)), expression(densi
ty), DNase.2)[] 
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 18477--18477
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 18524--18524
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
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 []             \T1/pcr/m/n/10 eps = .Machine$double.eps ^ (1/if(central) 3 els
e 2), central = FALSE)[] 
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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 1661) in paragraph at lines 19073--19077
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
Underfull \hbox (badness 1478) in paragraph at lines 19081--19085
\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 control$trace []\T1/ptm/m/n/10 is pos-i-tive
. De-faults to ev-ery 10 it-er-a-tions for []\T1/pcr/m/n/10 "BFGS" []\T1/ptm/m/
n/10 and
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Underfull \hbox (badness 2042) in paragraph at lines 19139--19141
[]\T1/ptm/m/n/10 indicates an er-ror from the []\T1/pcr/m/n/10 "L-BFGS-B" []\T1
/ptm/m/n/10 method; see com-po-nent
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Overfull \hbox (15.18042pt too wide) in paragraph at lines 19245--19245
 []      \T1/pcr/m/n/9 lower = rep(2, 25), upper = rep(4, 25)) # par[24] is *no
t* at boundary[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 19288--19288
 []     \T1/pcr/m/n/9 main = "initial solution of traveling salesman problem", 
axes = FALSE)[] 
Overfull \hbox (123.1803pt too wide) in paragraph at lines 19306--19306
 []\T1/pcr/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 
Overfull \hbox (96.18033pt too wide) in paragraph at lines 19309--19309
 []\T1/pcr/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 19329--19329
 []\T1/pcr/m/n/10 optimize(f, interval, ..., lower = min(interval), upper = max
(interval), 
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 []\T1/pcr/m/n/10 optimise(f, interval, ..., lower = min(interval), upper = max
(interval),[] 
Underfull \hbox (badness 2564) in paragraph at lines 19367--19378
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 f []\T1/ptm/m/n/10 is never eva
l-u-ated at two points closer to-gether than $\OML/cmm/m/it/10 ^^O$$\OMS/cmsy/m
/n/10 j\OML/cmm/m/it/10 x[]\OMS/cmsy/m/n/10 j \OT1/cmr/m/n/10 + (\OML/cmm/m/it/
10 tol=\OT1/cmr/m/n/10 3)$\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1082) in paragraph at lines 19367--19378
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 ^^O$ \T1/ptm/m/n/10 is ap-prox-i-mately 
[]\T1/pcr/m/n/10 sqrt([][].Machine[][][]$double.eps) []\T1/ptm/m/n/10 and $\OML
/cmm/m/it/10 x[]$ \T1/ptm/m/n/10 is the fi-nal ab-scissa
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 19430--19430
 []\T1/pcr/m/n/9 f  <- function(x) ifelse(x > -1, ifelse(x < 4, exp(-1/abs(x - 
1)), 10), 10)[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 19660--19660
 []\T1/pcr/m/n/9 matplot(p, p.adj, ylab="p.adjust(p, meth)", type = "l", asp = 
1, lty = 1:6,[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1639]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 20089--20089
 []      \T1/pcr/m/n/10 par.fit = list(col = "red", cex = 1.5, pch = 13, lwd = 
1.5),[] 
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[1641]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 20176--20176
 []       \T1/pcr/m/n/10 expression("Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s dist
 vs Leverage* " * h[ii] / (1 - h[ii]))),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 20178--20178
 []              \T1/pcr/m/n/10 panel.smooth(x, y, iter=iter.smooth, ...) else 
points,[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 20180--20180
 []     \T1/pcr/m/n/10 ask = prod(par("mfcol")) < length(which) && dev.interact
ive(),[] 
[1642]
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/pcr/m/n/10 "bottomleft", legend = "Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s di
stance", lty = cook.lty,
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/pcr/m/n/10 col = cook.col, text.col = cook.col, bty = "n", x.intersp
Underfull \hbox (badness 10000) in paragraph at lines 20248--20254
[]\T1/ptm/m/n/10 the num-ber of ro-bust-ness it-er-a-tions, the ar-gu-ment []\T
1/pcr/m/n/10 iter []\T1/ptm/m/n/10 in
Underfull \hbox (badness 10000) in paragraph at lines 20259--20262
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 1 or 2, to be used in []\T1/pcr/m
/n/10 ylim <-
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 []\T1/pcr/m/n/9 nlmod <- nls(y ~  Const + A * exp(B * x), start=list(Const=100
, A=10, B=1))[] 
[1647]
[1648]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 20657--20657
 []                    \T1/pcr/m/n/10 main = NULL, ci.col = "blue", ci.lty = 3,
 ...)[] 
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Underfull \hbox (badness 1194) in paragraph at lines 20667--20670
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
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Underfull \hbox (badness 1107) in paragraph at lines 20725--20727
[]\T1/ptm/m/n/10 numeric vec-tor of ab-scissa val-ues at which to eval-u-ate []
\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . De-faults to
Overfull \hbox (20.58041pt too wide) in paragraph at lines 20780--20780
 []\T1/pcr/m/n/9 plot(sfun.2);plot(sfun.2, xval = tt, add = TRUE, col = "orange
") # all colors[] 
[1651]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 20787--20787
 []\T1/pcr/m/n/9 legend(2.5, 1.9, paste("f =", c(0, 0.2, 1)), col = 1:3, lty = 
1, y.intersp = 1)[] 
[1652]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 20881--20881
 []\T1/pcr/m/n/9 title("plot(ts(..), axes=FALSE, ann=FALSE, frame.plot=TRUE, ma
r..., oma...)")[] 
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[1654]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 21009--21009
 []    \T1/pcr/m/n/9 ppois(10*(15:25), lambda = 100, lower.tail = FALSE)  # no 
cancellation[] 
[1655]
Underfull \hbox (badness 7740) in paragraph at lines 21072--21074
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 "Comparison of
[1656]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 21120--21120
 []\T1/pcr/m/n/10 poly(x, ..., degree = 1, coefs = NULL, raw = FALSE, simple = 
FALSE) 
Underfull \hbox (badness 10000) in paragraph at lines 21176--21178
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 poly(*, simple=TRUE)[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 polym(*, coefs=<non-NULL>)[]\T1/ptm/m/n/10 , and
[1657]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 21213--21213
 [] \T1/pcr/m/n/9 zm <- zapsmall(polym (    1:4, c(1, 4:6),  degree = 3)) # or 
just poly():[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 21218--21218
 []\T1/pcr/m/n/9 ## poly(<matrix>, df) --- used to fail till July 14 (vive la F
rance!), 2017:[] 
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Overfull \hbox (58.38037pt too wide) in paragraph at lines 22072--22072
 []          \T1/pcr/m/n/9 all.equal(pz3$sdev, pZ$sdev, tolerance = 1e-15)) # e
xactly equal typically[] 
[1671]
Underfull \hbox (badness 6859) in paragraph at lines 22139--22146
[][][]\T1/pcr/m/n/10 predict.glm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
redict.lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.loess[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.nls[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 predict.poly[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 22150--22156
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/pcr/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
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Overfull \hbox (54.78088pt too wide) in paragraph at lines 22438--22438
 []        \T1/pcr/m/n/10 rankdeficient = c("warnif", "simple", "non-estim", "N
A", "NAwarn"),[] 
Underfull \hbox (badness 10000) in paragraph at lines 22464--22467
[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string
 spec-i-fy-ing what should hap-pen in the
Underfull \hbox (badness 10000) in paragraph at lines 22464--22467
\T1/ptm/m/n/10 case of a rank de-fi-cient model, i.e., when []\T1/pcr/m/n/10 ob
ject$rank <
[1677]
Underfull \hbox (badness 5832) in paragraph at lines 22469--22474
\T1/ptm/m/n/10 cases, i.e., vec-tors not in the same pre-dic-tor sub-space as t
he
Underfull \hbox (badness 8151) in paragraph at lines 22469--22474
\T1/ptm/m/n/10 orig-i-nal data (with tol-er-ance []\T1/pcr/m/n/10 tol[]\T1/ptm/
m/n/10 ). In that case, the non-
Underfull \hbox (badness 1184) in paragraph at lines 22469--22474
\T1/ptm/m/n/10 estimable in-dices are also re-turned as at-tribute []\T1/pcr/m/
n/10 "non-estim" []\T1/ptm/m/n/10 (see
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[1683]
[1684]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 22937--22937
 []         \T1/pcr/m/n/10 subset = rep_len(TRUE, nrow(as.matrix(x))), fix_sign
 = TRUE, ...)[] 
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 23221--23221
 []             \T1/pcr/m/n/10 has.Pvalue = nc >= 4L && length(cn <- colnames(x
)) &&[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 23222--23222
 []                          \T1/pcr/m/n/10 substr(cn[nc], 1L, 3L) %in% c("Pr("
, "p-v"),[] 
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Underfull \hbox (badness 1337) in paragraph at lines 23626--23632
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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 []\T1/pcr/m/n/9 with(d, qqplot(Female, Male, pch = 19, xlim = c(-31, 31), ylim
 = c(-31, 31),[] 
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Underfull \hbox (badness 10000) in paragraph at lines 24251--24253
[]\T1/ptm/m/n/10 Wicklin, R. (2017) Sam-ple quan-tiles: A com-par-i-son of 9 de
f-i-ni-tions;
Underfull \hbox (badness 10000) in paragraph at lines 24251--24253
\T1/ptm/m/n/10 SAS Blog. [][]$\T1/pcr/m/n/10 https : / / blogs . sas . com / co
ntent / iml / 2017 / 05 / 24 /
Underfull \hbox (badness 10000) in paragraph at lines 24254--24255
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _
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Overfull \hbox (48.78088pt too wide) in paragraph at lines 24365--24365
 []       \T1/pcr/m/n/10 method = c("non.compact", "row.compact", "col.compact"
, "compact"),[] 
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Underfull \hbox (badness 1028) in paragraph at lines 24423--24426
[]\T1/ptm/m/n/10 further ar-gu-ments to be passed to or from meth-ods; for []\T
1/pcr/m/n/10 write() []\T1/ptm/m/n/10 and
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Underfull \hbox (badness 10000) in paragraph at lines 24538--24541
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
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[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 reorder[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
[1710]
Underfull \hbox (badness 7099) in paragraph at lines 24657--24659
[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 relevel[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
[1711]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 24692--24692
 []\T1/pcr/m/n/9 bymedianR <- with(InsectSprays, reorder(spray, count, median, 
decreasing=TRUE))[] 
[1712]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 24768--24768
 []\T1/pcr/m/n/9 plot(reorder(dd, 10:1, agglo.FUN = mean), main = "reorder(dd, 
10:1, mean)")[] 
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[1714]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 24885--24885
 []\T1/pcr/m/n/10 #         varying = ___,  # list / matrix / vector (use with 
care)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 24886--24886
 []\T1/pcr/m/n/10 #         v.names = ___,  # vector of variable names in long 
format[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 24887--24887
 []\T1/pcr/m/n/10 #         timevar, times, # name / values of constructed time
 variable[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 24888--24888
 []\T1/pcr/m/n/10 #         idvar, ids)     # name / values of constructed id v
ariable[] 
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[1716]
Underfull \hbox (badness 10000) in paragraph at lines 25045--25050
[][][]\T1/pcr/m/n/10 stack[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 aperm[]
[][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 relist[][][] []\T1/ptm/m/n/10 for r
e-shap-ing the re-sult of [][][]\T1/pcr/m/n/10 unlist[][][][]\T1/ptm/m/n/10 . [
][][]\T1/pcr/m/n/10 xtabs[][][] []\T1/ptm/m/n/10 and
Underfull \hbox (badness 2495) in paragraph at lines 25045--25050
[][][]\T1/pcr/m/n/10 as.data.frame.table[][][] []\T1/ptm/m/n/10 for cre-at-ing 
con-tin-gency ta-bles and con-vert-ing them back to
[1717]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 25056--25056
 []\T1/pcr/m/n/9 ## long to wide (direction = "wide") requires idvar and timeva
r at a minimum[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 25057--25057
 []\T1/pcr/m/n/9 reshape(Indometh, direction = "wide", idvar = "Subject", timev
ar = "time")[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 25076--25076
 []\T1/pcr/m/n/9 reshape(df, timevar = "visit", idvar = "id", direction = "wide
", v.names = "x")[] 
[1718]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 25181--25181
 []       \T1/pcr/m/n/10 na.action = c("+Big_alternate", "-Big_alternate", "na.
omit", "fail"),[] 
[1719]
Underfull \hbox (badness 1033) in paragraph at lines 25224--25230
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
Underfull \hbox (badness 10000) in paragraph at lines 25245--25248
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/pcr/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/pcr/m/n/10 y[j] =
[1720]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 25323--25323
 []\T1/pcr/m/n/9 plot(myNHT, type = "b", ylim = c(48, 60), main = "Running Medi
ans Example")[] 
[1721]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 25349--25349
 []\T1/pcr/m/n/9 ## An example with initial NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s -
 used to fail badly (notably for "Turlach"):[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 25361--25361
 []\T1/pcr/m/n/9 matplot(y = cbind(x15, rT15), type = "b", ylim = c(1,9), pch=1
:5, xlab = NA,[] 
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[1726]
[1727]
[1728]
Underfull \hbox (badness 6268) in paragraph at lines 25820--25825
[][][]\T1/pcr/m/n/10 SSasympOrig[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 S
Sbiexp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfol[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 SSfpl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSgo
mpertz[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSlogis[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 SSmicmen[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 1867) in paragraph at lines 26030--26032
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to
Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
[]\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 PP
Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
\T1/pcr/m/n/10 <- sum(!is.na([][]coef[][][](object))) []\T1/ptm/m/n/10 -- where
 in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was
Overfull \hbox (20.58041pt too wide) in paragraph at lines 26088--26088
 []\T1/pcr/m/n/9 sigma(lm1) # ~= 7.165  = "Residual standard error"  printed fr
om summary(lm1)[] 
[1733]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 26095--26095
 []\T1/pcr/m/n/9 stopifnot(all.equal(sigma(fm.DN1), summary(fm.DN1)$sigma, tole
rance=1e-15))[] 
[1734]
[1735]
Underfull \hbox (badness 2495) in paragraph at lines 26277--26286
[]\T1/ptm/m/n/10 For an in-verse gaus-sian GLM the model as-sumed is $\OML/cmm/
m/it/10 IG\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 ^^V[]; ^^Uw[]\OT1/cmr/m/n/10 )$ \T1
/ptm/m/n/10 (see [][]$\T1/pcr/m/n/10 https : / / en .
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[1737]
[1738]
Underfull \hbox (badness 2197) in paragraph at lines 26423--26426
[]\T1/pcr/m/n/10 psmirnov []\T1/ptm/m/n/10 gives the dis-tri-bu-tion func-tion,
 []\T1/pcr/m/n/10 qsmirnov []\T1/ptm/m/n/10 gives the quan-tile func-tion, and
Overfull \hbox (24.78088pt too wide) in paragraph at lines 26443--26443
 []       \T1/pcr/m/n/10 twiceit = FALSE, endrule = c("Tukey", "copy"), do.ends
 = FALSE)[] 
Underfull \hbox (badness 1412) in paragraph at lines 26450--26452
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing the kind of smoother re-qui
red; de-faults to
[1739]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 26535--26535
 []\T1/pcr/m/n/9 matlines(cbind(smooth(x, "3R"), smooth(x, "S"), smooth(x, "3RS
S"), smooth(x)))[] 
[1740]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 26560--26560
 []\T1/pcr/m/n/10 smooth.spline(x, y = NULL, w = NULL, df, spar = NULL, lambda 
= NULL, cv = FALSE, 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 26563--26563
 []              \T1/pcr/m/n/10 control.spar = list(), tol = 1e-6 * IQR(x), kee
p.stuff = FALSE)[] 
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[1742]
[1743]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 26788--26788
 []    \T1/pcr/m/n/10 nx <- length(x) - sum(duplicated( round((x - mean(x)) / t
ol) ))[] 
Underfull \hbox (badness 2547) in paragraph at lines 26792--26798
[]\T1/ptm/m/n/10 The de-fault []\T1/pcr/m/n/10 all.knots = FALSE []\T1/ptm/m/n/
10 and []\T1/pcr/m/n/10 nknots = .nknots.smspl[]\T1/ptm/m/n/10 , en-tails us-in
g only
Overfull \hbox (4.38043pt too wide) in paragraph at lines 26839--26839
 []\T1/pcr/m/n/9 plot(dist ~ speed, data = cars, main = "data(cars)  &  smoothi
ng splines")[] 
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Overfull \hbox (47.58038pt too wide) in paragraph at lines 26860--26860
 []\T1/pcr/m/n/9 with(cars.spl$fit, min + range * knot[-c(1:3, nk+1 +1:3)]) # =
= unique(cars$speed)[] 
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[1746]
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 27052--27052
 []\T1/pcr/m/n/10 spec.ar(x, n.freq, order = NULL, plot = TRUE, na.action = na.
fail, 
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Underfull \hbox (badness 10000) in paragraph at lines 27317--27322
\T1/ptm/m/n/10 This makes the spec-tral den-sity a den-sity over the range []\T
1/pcr/m/n/10 (-frequency(x)/2,
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[1753]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 27431--27431
 []          \T1/pcr/m/n/10 method = c("fmm", "periodic", "natural", "monoH.FC"
, "hyman"),[] 
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[1755]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 27613--27613
 []\T1/pcr/m/n/9 set.seed(8); x <- sort(round(rnorm(30), 1)); y <- round(sin(pi
 * x) + rnorm(30)/10, 3)[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 27619--27619
 []\T1/pcr/m/n/9 plot(x, y, main = "spline(x,y, ties=list(\"ordered\", mean))  
for when x has ties")[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 27628--27628
 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "monoH.FC")(x), add = TRUE, c
ol = 3, n = 1001)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 27629--27629
 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "hyman")   (x), add = TRUE, c
ol = 4, n = 1001)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[1756]
Underfull \hbox (badness 2922) in paragraph at lines 27698--27703
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1757]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 27735--27735
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5.2), xlim
 = c(-.3, 5),[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 27738--27738
 []                    \T1/pcr/m/n/9 {f[phi](x) == phi[1] + (phi[2]-phi[1])*~e^
{-e^{phi[3]}*~x}}))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 27747--27747
 []         \T1/pcr/m/n/9 c(0  ,  1   ), 1, length = 0.08, angle = 25); text(0.
5, 1, quote(1))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 27748--27748
 []  \T1/pcr/m/n/9 y0 <- 1 + 4*exp(-3/4) ; t.5 <- log(2) / exp(-3/4) ; AR2 <- 3
 # (Asym + R0)/2[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 27752--27752
 []  \T1/pcr/m/n/9 axis(2, at = c(1,AR2,5), labels= expression(phi[2], frac(phi
[1]+phi[2],2), phi[1]),[] 
[1758]
Underfull \hbox (badness 3240) in paragraph at lines 27806--27809
[][][]\T1/pcr/m/n/10 nls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 selfStart
[][][][]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 example(SSasympOff) []\T1/ptm/m/n/10 
gives graph show-ing the []\T1/pcr/m/n/10 SSasympOff
[1759]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 27827--27827
 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOff(xx, Asym = 5, lrc = log(
0.4), c0 = 3/4)) )[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27830--27830
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(-.5,6), xlim
 = c(-1, 8),[] 
[1760]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27913--27913
 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOrig(xx, Asym = 5, lrc = log
(log(2)))) )[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27917--27917
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5), xlim =
 c(-1/4, 5),[] 
Overfull \hbox (58.38037pt too wide) in paragraph at lines 27927--27927
 []  \T1/pcr/m/n/9 axis(2, at = 5*c(1/2,1), labels= expression(frac(phi[1],2), 
phi[1]), pos=0, las=1)[] 
Overfull \hbox (106.98032pt too wide) in paragraph at lines 27932--27932
 []       \T1/pcr/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1761]
Underfull \hbox (badness 2922) in paragraph at lines 27968--27974
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27990--27990
 []\T1/pcr/m/n/9 print(getInitial(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), dat
a = Indo.1),[] 
[1762]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 28006--28006
 []  \T1/pcr/m/n/9 legend("topright", c("y1+y2", "y1 = 3.5 * exp(-4*x)", "y2 = 
1.5 * exp(-x)"),[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 28020--28020
 []\T1/pcr/m/n/9 ## Fails by default (scaleOffset=0) on most platforms {also af
ter increasing maxiter !}[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 28022--28022
 []        \T1/pcr/m/n/9 nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, trace=TRUE)[] 
Overfull \hbox (128.58029pt too wide) in paragraph at lines 28028--28028
 []            \T1/pcr/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 
[1763]
[1764]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 28139--28139
 []\T1/pcr/m/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input) - exp(-exp(lK
a)*input)) 
[1765]
Underfull \hbox (badness 2922) in paragraph at lines 28201--28206
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1766]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 28239--28239
 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "A", phi[2] == "B", phi[3] == "xm
id", phi[4] == "scal")))[] 
Underfull \hbox (badness 2922) in paragraph at lines 28288--28293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1767]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28319--28319
 []\T1/pcr/m/n/9 lines(x, do.call(SSgompertz, c(list(x=x), coef(fm1))), col = "
red", lwd=2)[] 
Underfull \hbox (badness 2922) in paragraph at lines 28353--28358
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1768]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 28378--28378
 []\T1/pcr/m/n/9 ## Initial values are in fact the converged one here, "Number 
of iter...: 0" :[] 
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 []\T1/pcr/m/n/9 fm2 <- update(fm1, control=nls.control(tol = 1e-9, warnOnly=TR
UE), trace = TRUE)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28402--28402
 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "Asym", phi[2] == "xmid", phi[3] 
== "scal")))[] 
[1769]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 28412--28412
 []  \T1/pcr/m/n/9 segments(c(2,2.6,2.6), c(0,  2.5,3.5),   # NB.  SSlogis(x = 
xmid = 2) = 2.5[] 
Underfull \hbox (badness 2922) in paragraph at lines 28447--28452
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28469--28469
 []\T1/pcr/m/n/9 print(getInitial(rate ~ SSmicmen(conc, Vm, K), data = PurTrt),
 digits = 3)[] 
[1770]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 28487--28487
 []       \T1/pcr/m/n/9 ann = FALSE, axes = FALSE, main = "Parameters in the SS
micmen model")[] 
[1771]
Underfull \hbox (badness 6493) in paragraph at lines 28539--28544
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28567--28567
 []\T1/pcr/m/n/9 getInitial(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28569--28569
 []\T1/pcr/m/n/9 fm1 <- nls(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 28573--28573
 []\T1/pcr/m/n/9 plot(weight ~ Time, Chick.6, xlim = c(0, 21), main = "SSweibul
l() fit to Chick.6")[] 
Overfull \hbox (69.18036pt too wide) in paragraph at lines 28576--28576
 []\T1/pcr/m/n/9 As <- coef(fm1)[["Asym"]]; abline(v = 0, h = c(As, As - coef(f
m1)[["Drop"]]), lty = 3)[] 
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[]\T1/pcr/m/n/10 is.mts(x) []\T1/ptm/m/n/10 tests if an ob-ject []\T1/pcr/m/n/1
0 x []\T1/ptm/m/n/10 is a mul-ti-vari-ate time se-ries, i.e., ful-fills []\T1/p
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[1844]) (./stats4-pkg.tex
Chapter 11.
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Chapter 12.
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[][][]\T1/pcr/m/n/10 select.list[][][] []\T1/ptm/m/n/10 (a text ver-sion ex-cep
t on Win-dows and the ma-cOS GUI), [][][]\T1/pcr/m/n/10 menu[][][] []\T1/ptm/m/
n/10 (whose
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Chapter 13.
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diff \T1/ptm/m/n/10 or \T1/pcr/m/n/10 \dontshow\T1/ptm/m/n/10 , and \T1/pcr/m/n
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r
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' meta-data for the cu
r-rent pack-ages in the CRAN pack-age repos-i-
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/pcr/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CR
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\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion 3.2.0, User-d
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 []         \T1/pcr/m/n/10 stylesheet = file.path(R.home("doc"), "html", "R-nav
.css"),[] 
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 []         \T1/pcr/m/n/10 hooks = list(pkg_href = function(pkg) sprintf("%s.ht
ml", pkg)),[] 
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 []         \T1/pcr/m/n/10 mathjax_config = file.path(R.home("doc"), "html", "m
athjax-config.js"),[] 
[1923]
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 []\T1/pcr/m/n/10 checkDocFiles   (package, dir, lib.loc = NULL, chkInternal = 
NULL) 
[1926]
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 []\T1/pcr/m/n/10 checkRdContents (package, dir, lib.loc = NULL, chkInternal = 
NULL)[] 
[1927]
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[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-
tor of links, as re-turned by
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 []             \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macro
s", "system.Rd"))[] 
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[]\T1/ptm/m/n/10 By de-fault, the tags \T1/pcr/m/n/10 \S3method\T1/ptm/m/n/10 ,
 \T1/pcr/m/n/10 \S4method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \command\T1/ptm/m/n/10
 , \T1/pcr/m/n/10 \docType\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \email\T1/ptm/m/n/10 
,
[1935]
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[1937]
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[]\T1/ptm/m/n/10 This func-tion starts the in-ter-nal HTTP server, which runs o
n the loop-back in-ter-face
[1938]
[1939]
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 []                      \T1/pcr/m/n/10 types = c("examples", "tests", "vignett
es"),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 4207--4207
 []\T1/pcr/m/n/10 testInstalledBasic(scope = c("basic", "devel", "both", "inter
net", "all"),[] 
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1940]
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 []\T1/pcr/m/n/9 (prio <- sapply(as.vector(pNms), packageDescription, fields = 
"Priority"))[] 
[1941]
[1942]
Underfull \hbox (badness 7832) in paragraph at lines 4388--4391
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/pcr/m/n/10 texi2dvi []\T1/ptm/m/n/10 5
.0 and later; []\T1/pcr/m/n/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-ti
on
[1943]
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[1945]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4623--4623
 []  \T1/pcr/m/n/10 "mac.binary", "win.binary"), verbose.level = as.integer(dry
run),[] 
[1946]
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Underfull \hbox (badness 10000) in paragraph at lines 4807--4810
[]\T1/ptm/m/n/10 optional char-ac-ter strings for the `[]\T1/pcr/m/n/10 Copyrig
ht[]\T1/ptm/m/n/10 ' and
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[]\T1/ptm/m/n/10 All ex-ist-ing files in di-rec-tory []\T1/pcr/m/n/10 po []\T1/
ptm/m/n/10 with names `\T1/pcr/m/n/10 R-\T1/ptm/m/sl/10 lang\T1/pcr/m/n/10 .po\
T1/ptm/m/n/10 ' are up-dated from
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/pcr/m/n/10 po
/\T1/ptm/m/sl/10 pkgname\T1/pcr/m/n/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. T
he
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in t
he pack-age are ex-am-ined to cre-ate a file
[1949]
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[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 vignetteEngine[][][][]\T1/ptm/m/n/10 
, such as []\T1/pcr/m/n/10 "utils::Sweave" []\T1/ptm/m/n/10 or
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5094--5094
 []               \T1/pcr/m/n/10 verbose = FALSE, unpacked = FALSE, subdirs = F
ALSE,[] 
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 []               \T1/pcr/m/n/10 latestOnly = TRUE, addFiles = FALSE, rds_compr
ess = "xz",[] 
[1953]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/10 ',
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[]\T1/pcr/m/n/10 "Package"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Version"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Priority"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Depe
nds"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Imports"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1127) in paragraph at lines 5150--5156
[]\T1/pcr/m/n/10 write_PACKAGES []\T1/ptm/m/n/10 scans the named di-rec-tory fo
r R pack-ages, ex-tracts in-for-ma-tion from
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\T1/ptm/m/n/10 each pack-age's `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file
, and writes this in-for-ma-tion into the `\T1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/1
0 ',
[1954]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
Underfull \hbox (badness 2772) in paragraph at lines 5204--5209
\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 PACKAGES.gz\T1/ptm/m/n/10 ' files. See [][][
]\T1/pcr/m/n/10 update_PACKAGES[][][] []\T1/ptm/m/n/10 for ef-fi-ciently up-dat
-ing ex-ist-ing
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 []  \T1/pcr/m/n/9 "    stop(errorCondition(gettext(\TS1/pcr/m/n/9 '\T1/pcr/m/n
/9 needs Deep Thought\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), class=\TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 myError\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ))",[] 
[1957]) (./utils-pkg.tex
[1958]
Chapter 14.
Underfull \hbox (badness 1072) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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 []\T1/pcr/m/n/9 find("cor", numeric = TRUE)                     # numbers with
 these names[] 
[1963]
[1964]
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\T1/ptm/m/n/10 are []\T1/pcr/m/n/10 c("vertical", "horizontal", "cascade", "min
imize",
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 of win-dow 
han-dles, by de-fault pro-duced by
[1965]
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 []\T1/pcr/m/n/9 # This default is useful only in SDI mode:  it will tile any F
irefox window[] 
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 []\T1/pcr/m/n/9 .arrangeWindowsDefaults <- list(c("R", "all"), pattern = c("",
 "Firefox"))[] 
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 []         \T1/pcr/m/n/10 prompts = getOption("askYesNo", gettext(c("Yes", "No
", "Cancel"))),[] 
[1966]
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[1968]
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 []\T1/pcr/m/n/10 aspell_package_R_files(dir, ignore = character(), control = l
ist(),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 692--692
 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
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 []\T1/pcr/m/n/10 aspell_package_C_files(dir, ignore = character(), control = l
ist(),[] 
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 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
[1969]
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[]\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 aspell_package_Rd_files[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 4416) in paragraph at lines 728--734
[]\T1/pcr/m/n/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 a
spell_package_C_files []\T1/ptm/m/n/10 per-form spell check-
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[1971]
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[]\T1/ptm/m/n/10 A char-ac-ter ma-trix with one row per pack-age, row names the
 pack-age names and col-
[1972]
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 []\T1/pcr/m/n/9 db <- available.packages(repos = findCRANmirror("web"), filter
s = "duplicates")[] 
[1973]
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 []\T1/pcr/m/n/10 bibentry(bibtype, textVersion = NULL, header = NULL, footer =
 NULL, 
[1974]
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[][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if Bib-TeX co
de should be given ad-di-tion-ally;
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\T1/ptm/m/n/10 cur-rently ap-plies only to []\T1/pcr/m/n/10 style = "citation"[
]\T1/ptm/m/n/10 . The de-fault for
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\T1/ptm/m/n/10 the []\T1/pcr/m/n/10 print() []\T1/ptm/m/n/10 method de-pends on
 the num-ber of (bib) en-tries and
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\T1/ptm/m/n/10 For ex-am-ple, to see no Bib-TeX at all, you can change the de-f
ault by
[1975]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1976]
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[]\T1/ptm/m/n/10 The DOI ([][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Digital _ Object _
[1977]
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 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
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[]\T1/ptm/m/n/10 For ex-am-ple, sup-pose that on a data set which you know to b
e quite large the com-
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\T1/ptm/m/n/10 mand []\T1/pcr/m/n/10 data.frame(x, y, z, monday, tuesday) []\T1
/ptm/m/n/10 never re-turns. Do not re-port that
[1984]
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 []                                     \T1/pcr/m/n/9 data = infert, family = b
inomial())))[] 
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 []     \T1/pcr/m/n/10 md5sum = FALSE, digest = NULL, full.names = length(path)
 > 1,[] 
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 []\T1/pcr/m/n/10 changedFiles(before, after, path = before$path, timestamp = b
efore$timestamp,[] 
[1986]
[1987]
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 []\T1/pcr/m/n/9 snapshot <- fileSnapshot(dir, timestamp = tempfile("timestamp"
), md5sum=TRUE)[] 
[1988]
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[]\T1/pcr/m/n/10 charClass []\T1/ptm/m/n/10 was added in \T1/phv/m/n/10 R \T1/p
tm/m/n/10 4.1.0. A less di-rect way to ex-am-ine char-ac-ter classes
[1989]
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 []\T1/pcr/m/n/9 cl <- c("alnum", "alpha", "blank", "digit", "graph", "punct", 
"upper", "xdigit")[] 
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 []\T1/pcr/m/n/9 X <- as.data.frame(X); row.names(X) <- sQuote(intToUtf8(x, mul
tiple = TRUE))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2146--2146
 []\T1/pcr/m/n/9 ## How many printable characters are there? (Around 280,000 in
 Unicode 13.)[] 
[1990]
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 []\T1/pcr/m/n/10 chooseBioCmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1992]
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 []\T1/pcr/m/n/10 chooseCRANmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1993]
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[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/pcr/m/n/10 citation() []\T1/
ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print
Underfull \hbox (badness 1400) in paragraph at lines 2461--2468
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
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 []\T1/pcr/m/n/10 citeNatbib(keys, bib, textual = FALSE, before = NULL, after =
 NULL,[] 
[1996]
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 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
[1997]
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 []\T1/pcr/m/n/10 citEntry(entry, textVersion = NULL, header = NULL, footer = N
ULL, ...) 
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[][][]\T1/pcr/m/n/10 citation[][][] []\T1/ptm/m/n/10 for more in-for-ma-tion ab
out cit-ing R and R pack-ages and `\T1/pcr/m/n/10 CITATION\T1/ptm/m/n/10 ' file
s;
[1998]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
                                                  
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[]\T1/ptm/m/n/10 The Win-dows clip-board of-fers data in a num-ber of for-mats:
 see e.g. [][]$\T1/pcr/m/n/10 https : / / docs .
[1999]
[2000]
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[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
[2001]
[2002]
[2003]
Underfull \hbox (badness 10000) in paragraph at lines 3083--3085
[]\T1/ptm/m/n/10 character string, in-di-cat-ing which type of pack-ages: see
[2004]
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[2007]
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[]\T1/ptm/m/n/10 To just look in the `\T1/pcr/m/n/10 data\T1/ptm/m/n/10 ' di-re
c-tory of the cur-rent work-ing di-rec-tory, set []\T1/pcr/m/n/10 package =
[2008]
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 []\T1/pcr/m/n/9 try(data(package = "rpart"), silent = TRUE) # list the data se
ts in the rpart package[] 
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 []\T1/pcr/m/n/9 data(USArrests, "VADeaths")    # load the data sets \TS1/pcr/m
/n/9 '\T1/pcr/m/n/9 USArrests\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and \TS1/pcr/m/n/9 
'\T1/pcr/m/n/9 VADeaths\TS1/pcr/m/n/9 '[] 
[2009]
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[]\T1/ptm/m/n/10 The data en-try win-dow re-sponds to X re-sources of class []\
T1/pcr/m/n/10 R_dataentry[]\T1/ptm/m/n/10 . Re-sources
[2010]
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[2015]
[2016]
Overfull \hbox (74.58035pt too wide) in paragraph at lines 3967--3967
 []  \T1/pcr/m/n/9 DLL.version(file.path(R.home(), "library/stats/libs", .Platf
orm$r_arch, "stats.dll"))[] 
[2017]
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[]\T1/ptm/m/n/10 Support for method []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10
 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[2018]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/pcr/m/n/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
Underfull \hbox (badness 7238) in paragraph at lines 4167--4172
[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 "curl" []\T1/ptm/m/n/10 meth-ods, prox-ies can be set \T1/ptm/m/it/1
0 via \T1/ptm/m/n/10 the en-vi-ron-
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\T1/ptm/m/n/10 ment vari-ables []\T1/pcr/m/n/10 http_proxy []\T1/ptm/m/n/10 or 
[]\T1/pcr/m/n/10 ftp_proxy[]\T1/ptm/m/n/10 . See [][]$\T1/pcr/m/n/10 https : / 
/ curl . se / libcurl / c /
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\T1/ptm/m/n/10 string con-tain-ing `[]\T1/pcr/m/n/10 "Schannel"[]\T1/ptm/m/n/10
 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-
[2019]
[2020]
Underfull \hbox (badness 4660) in paragraph at lines 4308--4311
\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 do
wnload.file[][][] []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 Data frame columns are co-erced on in-put to \T1/ptm/m/it/10 c
har-ac-ter \T1/ptm/m/n/10 un-less nu-meric (in the sense of
[2024]
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 []        \T1/pcr/m/n/10 character.only = FALSE, give.lines = FALSE, local = F
ALSE,[] 
[2025]
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\T1/ptm/m/n/10 is saved, then ini-tial-ized to a spec-i-fied state, the ex-am-p
le is run and
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\T1/ptm/m/n/10 the (saved) state is re-stored. []\T1/pcr/m/n/10 setRNG = TRUE [
]\T1/ptm/m/n/10 sets the same state as
Underfull \hbox (badness 2846) in paragraph at lines 4637--4644
[]\T1/pcr/m/n/10 R CMD [][]check[][][] []\T1/ptm/m/n/10 does for run-ning a pac
k-age's ex-am-ples. This is cur-
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\T1/ptm/m/n/10 rently equiv-a-lent to []\T1/pcr/m/n/10 setRNG = {RNGkind("defau
lt", "default",
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[]\T1/ptm/m/n/10 logical (or []\T1/pcr/m/n/10 "default"[]\T1/ptm/m/n/10 ) in-di
-cat-ing if [][][]\T1/pcr/m/n/10 devAskNewPage[][][](ask = TRUE)
[2026]
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[]\T1/ptm/m/n/10 An en-try in []\T1/pcr/m/n/10 getOption("repos") []\T1/ptm/m/n
/10 named `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' which is not the de-fault
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 []\T1/pcr/m/n/9 # Set a breakpoint in both copies of that function, assuming o
ne is in the[] 
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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 []\T1/pcr/m/n/10 ## NB: The methods for \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 data.f
rame\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 and \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 array\
TS1/pcr/m/n/10 '  \T1/pcr/m/n/10 are identical to the \TS1/pcr/m/n/10 '\T1/pcr/
m/n/10 matrix\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 one[] 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 6178--6178
 []\T1/pcr/m/n/10 tail(x, n = 6L, keepnums = TRUE, addrownums, ...) # exported 
as tail.matrix()[] 
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Overfull \hbox (15.18042pt too wide) in paragraph at lines 6312--6312
 []    \T1/pcr/m/n/9 ## BUT if I use "useAttrib(.)", this is *not* ok, when n i
s of length 2:[] 
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 []    \T1/pcr/m/n/9 ## --- because [i,j]-indexing of data frames *also* drops 
"other" attributes ..[] 
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 6523--6523
 [] \T1/pcr/m/n/9 ## -> nicely formatted pdf -- including math formula -- for h
elp(dgamma):[] 
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[]\T1/ptm/m/n/10 The post-ing guide ([][]$\T1/pcr/m/n/10 https : / / www . r-[]
project . org / posting-[]guide . html$[][]\T1/ptm/m/n/10 ), also
[2055]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-
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\T1/ptm/m/n/10 dex, `\T1/ptm/m/sl/10 R_DOC_DIR\T1/pcr/m/n/10 /html/packages.htm
l\T1/ptm/m/n/10 ', which can be re-made by
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/pcr/m/n/10 hsearch_db() []\T1/ptm/m/n/10 builds and caches the help searc
h database for sub-se-quent use by
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
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Underfull \hbox (badness 10000) in paragraph at lines 7239--7246
[]\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 means to use []\T1/pcr/m/n/10 c("Depends
", "Imports", "LinkingTo",
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\T1/pcr/m/n/10 "Suggests") []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pkgs []\T1/ptm
/m/n/10 and []\T1/pcr/m/n/10 c("Depends", "Imports",
Underfull \hbox (badness 1270) in paragraph at lines 7239--7246
\T1/pcr/m/n/10 "LinkingTo") []\T1/ptm/m/n/10 for added de-pen-den-cies: this in
-stalls all the pack-ages
Underfull \hbox (badness 1270) in paragraph at lines 7254--7264
\T1/ptm/m/n/10 for the `[]\T1/pcr/m/n/10 --configure-args[]\T1/ptm/m/n/10 ' fla
g in the call to []\T1/pcr/m/n/10 R CMD INSTALL[]\T1/ptm/m/n/10 . If
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed to []\T1/pcr/m/n/10 R
Underfull \hbox (badness 4913) in paragraph at lines 7297--7301
\T1/pcr/m/n/10 CMD INSTALL []\T1/ptm/m/n/10 for a source pack-age in-stall. E.g
., []\T1/pcr/m/n/10 c("--html",
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\T1/pcr/m/n/10 "--no-multiarch", "--no-test-load") []\T1/ptm/m/n/10 or, for ma-
cOS,
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
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[]\T1/ptm/m/n/10 further ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 downl
oad.file[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/pcr/m/n
/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
Underfull \hbox (badness 5175) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages
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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/pcr/m/n/10 type = "source" []\T1/pt
m/m/n/10 al-ways works pro-vided the pack-age con-tains no
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[]\T1/pcr/m/n/10 install.packages []\T1/ptm/m/n/10 needs to be able to com-pute
 all the de-pen-den-cies of []\T1/pcr/m/n/10 pkgs []\T1/ptm/m/n/10 from
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[][][]\T1/pcr/m/n/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pac
kages[][][][]\T1/ptm/m/n/10 ,
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 []  \T1/pcr/m/n/9 configure.args = c(RNetCDF = "--with-netcdf-include=/usr/inc
lude/udunits2"))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
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[]\T1/pcr/m/n/10 installed.packages []\T1/ptm/m/n/10 scans the `\T1/pcr/m/n/10 
DESCRIPTION\T1/ptm/m/n/10 ' files of each pack-age found along
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 7668--7668
 []\T1/pcr/m/n/9 plic <- installed.packages(.Library, priority = "high", fields
 = "License")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7673--7673
 []\T1/pcr/m/n/9 ## Keep packages that come with R (priority="high") and all ot
hers separate![] 
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[]\T1/ptm/m/n/10 The ac-tual link-ing com-mand is con-structed by the ver-sion 
of []\T1/pcr/m/n/10 libtool []\T1/ptm/m/n/10 in-stalled at
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 []\T1/pcr/m/n/9 ls.str(mode = "list")   #- what are the structured objects I h
ave defined?[] 
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 []\T1/pcr/m/n/10 make.socket(host = "localhost", port, fail = TRUE, server = F
ALSE) 
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[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
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 []   \T1/pcr/m/n/10 methods(generic.function, class, all.names = FALSE, dropPa
th = FALSE)[] 
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 []                                    \T1/pcr/m/n/10 all.names = FALSE, dropPa
th = FALSE)[] 
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[]\T1/ptm/m/n/10 a sym-bol or char-ac-ter string nam-ing a class: only used if
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/pcr/m/n/10 methods(..)[]\T1/ptm
/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
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[]\T1/ptm/m/n/10 logical spec-i-fy-ing that the news should be opened in the br
owser (by
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 []\T1/pcr/m/n/9 db4 <- news(Version == "4.0.0" & grepl("^BUG", Category) & gre
pl("PR#", Text),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 8637--8637
 []\T1/pcr/m/n/9 ## News from a date range (\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Matri
x\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 is there in a regular R installation):[] 
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 []\T1/pcr/m/n/9 ## Which categories have been in use? % R-core maybe should st
andardize a bit more[] 
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[]\T1/pcr/m/n/10 "B"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "KiB"[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 "MiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "GiB"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "TiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "PiB"[]\T1/ptm/m/
n/10 ,
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[]\T1/ptm/m/n/10 For all stan-dards, []\T1/pcr/m/n/10 units = "auto" []\T1/ptm/
m/n/10 is also al-lowed. If []\T1/pcr/m/n/10 standard =
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[]\T1/ptm/m/n/10 optionally a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/
n/10 string with an en-cod-ing for an op-tional
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 []            \T1/pcr/m/n/10 date.fields = c("Date", "Packaged", "Date/Publica
tion", "Built"),[] 
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%d/%y"),[] 
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ields=date.fields))[] 
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 asDateBuilt()[]\T1/ptm/m/n/10 , a [][][]\
T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string as from
Underfull \hbox (badness 10000) in paragraph at lines 9050--9052
[]\T1/pcr/m/n/10 packageVersion() []\T1/ptm/m/n/10 is a con-ve-nience short-cut
, al-low-ing things like []\T1/pcr/m/n/10 if
Underfull \hbox (badness 1259) in paragraph at lines 9058--9063
[]\T1/ptm/m/n/10 If a `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the 
given pack-age is found and can suc-cess-fully be read,
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 []          \T1/pcr/m/n/9 identical(pu, packageDate("stats"))) # as "utils" an
d "stats" are[] 
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 []                                   \T1/pcr/m/n/9 # both \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 base R\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and "Built" at same time[] 
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("ok", "upgrade",
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("installed", "not
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 []       \T1/pcr/m/n/10 include = c("given", "family", "email", "role", "comme
nt"),[] 
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 []       \T1/pcr/m/n/10 braces = list(given = "", family = "", email = c("<", 
">"),[] 
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 []         \T1/pcr/m/n/9 "S original, <http://statwww.epfl.ch/davison/BMA/libr
ary.html>"),[] 
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to
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 []         \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", "
no.loss"),[] 
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 []\T1/pcr/m/n/9 dd <- read.DIF(file.path(udir, "exDIF.dif"), header = TRUE, tr
anspose = TRUE)[] 
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 []\T1/pcr/m/n/9 read.fwf(ff, widths = list(c(1,0, 2,3), c(2,2,2))) #> 1 NA 23 
456 98 76 54[] 
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 []           \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss",
 "no.loss"),[] 
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 []           \T1/pcr/m/n/10 row.names, col.names, as.is = !stringsAsFactors, t
ryLogical = TRUE,[] 
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 []           \T1/pcr/m/n/10 skip = 0, check.names = TRUE, fill = !blank.lines.
skip,[] 
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 []           \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, ski
pNul = FALSE)[] 
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[]\T1/ptm/m/n/10 Using []\T1/pcr/m/n/10 row.names = NULL []\T1/ptm/m/n/10 force
s row num-ber-ing. Miss-ing or []\T1/pcr/m/n/10 NULL
Underfull \hbox (badness 2435) in paragraph at lines 11085--11089
[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 de-ter-m
in-ing if columns con-sist-ing en-tirely of []\T1/pcr/m/n/10 "F"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "FALSE"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "TRUE" []\T1/pt
m/m/n/10 should be con-verted to [][][]\T1/pcr/m/n/10 logical[][][][]\T1/ptm/m/
n/10 ; passed to
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 []\T1/pcr/m/n/10 readRegistry(key, hive = c("HLM", "HCR", "HCU", "HU", "HCC", 
"HPD"), 
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 []             \T1/pcr/m/n/10 maxdepth = 1, view = c("default", "32-bit", "64-
bit"))[] 
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are
Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 HKEY_CLASSES_ROOT[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/pcr/m/n/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_USER
S[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_CURRENT_CONFIG
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 []        \T1/pcr/m/n/10 ipar <- list(mean = c(0, 1), vcov = c bind(c(1, 1), c
(1, 0))) 
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[2128]
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[2130]
Underfull \hbox (badness 2469) in paragraph at lines 11853--11857
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2024). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
Underfull \hbox (badness 10000) in paragraph at lines 11853--11857
[][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / w / index . php ? title 
= Roman _ numerals & oldid =
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 []\T1/pcr/m/n/9 as.roman(c(NA, 1:3, "", strrep("I", 1:7))) # + NA with a warni
ng for the last.[] 
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 []\T1/pcr/m/n/9 ## simple consistency checks -- arithmetic when result is in  
{1,2,..,4999} :[] 
[2131]
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 []\T1/pcr/m/n/10 4. |     \-base:::tryCatchOne(expr, names, parentenv, handler
s[[1L]])[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 12031--12031
 []\T1/pcr/m/n/10 5. |       \-base:::doTryCatch(return(expr), name, parentenv,
 handler)[] 
[2133]
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[]\T1/ptm/m/n/10 The chap-ter on ``Tidy-ing and pro-fil-ing R code'' in `Writ-i
ng R Ex-ten-sions':
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[]\T1/ptm/m/n/10 If `[]\T1/pcr/m/n/10 --default-packages[]\T1/ptm/m/n/10 ' is n
ot used, then []\T1/pcr/m/n/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-me
nt vari-
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\T1/ptm/m/n/10 able []\T1/pcr/m/n/10 R_SCRIPT_DEFAULT_PACKAGES[]\T1/ptm/m/n/10 
. If this is set, then it takes prece-dence over
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 []            \T1/pcr/m/n/10 restrict = c("functions", "descriptions", "news",
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nettes"),[] 
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 []            \T1/pcr/m/n/10 sortby = c("score", "date:late", "date:early", "s
ubject",[] 
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scending"),[] 
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\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 score[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 date:
late []\T1/ptm/m/n/10 for sort-ing by date with lat-est re-sults first,
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\T1/ptm/m/n/10 der, []\T1/pcr/m/n/10 subject:descending []\T1/ptm/m/n/10 for re
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Rfunctions"))[] 
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[]\T1/ptm/m/n/10 Character string spec-i-fy-ing whether emacs style ([]\T1/pcr/
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / www . gnu . org / software /
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[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 stylepath []\T1/ptm/m/n/10 i
s now taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 The use of fancy quotes (see [][][]\T1/pcr/m/n/10 sQuote[][][]
[]\T1/ptm/m/n/10 ) can cause prob-lems when set-ting \T1/phv/m/n/10 R \T1/ptm/m
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[]\T1/ptm/m/n/10 The file `\T1/pcr/m/n/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ures
 the R GUI ([]\T1/pcr/m/n/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows
 and
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 con-fig-ured the map-ping of font num-bers to fonts, and
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end of report[] 
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[]\T1/ptm/m/n/10 Repository `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' is treated
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fix)) 
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[]\T1/pcr/m/n/10 getSrcFilename []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 getSrcDir
ectory []\T1/ptm/m/n/10 re-turn char-ac-ter vec-tors hold-ing the file-
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ive
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[][][]\T1/pcr/m/n/10 options[][][]("width")[]\T1/ptm/m/n/10 ; note that this ha
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h de-faults to []\T1/pcr/m/n/10 "no" []\T1/ptm/m/n/10 for back com-pat-i-bil-it
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lt, de-ter-min-ing the []\T1/pcr/m/n/10 nlines []\T1/ptm/m/n/10 ar-gu-ment to
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[]\T1/ptm/m/n/10 Options other than []\T1/pcr/m/n/10 memory = "none" []\T1/ptm/
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[]\T1/ptm/m/n/10 The chap-ter on `Tidy-ing and pro-fil-ing R code' in `Writ-ing
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[]\T1/ptm/m/n/10 further ar-gu-ments passed to the driver's setup func-tion. Se
e
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[][][]\T1/pcr/m/n/10 RweaveLatexSetup[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/
m/n/10 RtangleSetup[][][][]\T1/ptm/m/n/10 , re-spec-tively, for the ar-gu-
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fau
lt) then the avail-able syn-tax ob-jects are con-sulted in
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\T1/ptm/m/n/10 turn, and se-lected if their []\T1/pcr/m/n/10 extension []\T1/pt
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\T1/ptm/m/n/10 name. Ob-jects []\T1/pcr/m/n/10 SweaveSyntaxNoweb []\T1/ptm/m/n/
10 (with []\T1/pcr/m/n/10 extension = "[.][rsRS]nw$"[]\T1/ptm/m/n/10 ) and
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\T1/ptm/m/n/10 si-bly use-ful val-ues in-clude `[]\T1/pcr/m/n/10 -h[]\T1/ptm/m/
n/10 ' (fol-low sym-bolic links, also `[]\T1/pcr/m/n/10 -L[]\T1/ptm/m/n/10 ' on
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\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 --acls[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --
exclude-backups[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --exclude-vcs[]\T1/ptm/m/n
/10 ' (and sim-i-lar) and on Win-dows
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[]\T1/ptm/m/n/10 A con-ve-nient and ro-bust way to set op-tions for GNU []\T1/p
cr/m/n/10 tar []\T1/ptm/m/n/10 is via en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 is set t
o the com-mand []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment 
vari-able
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / pubs .
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\T1/pcr/m/n/10 opengroup . org / onlinepubs / 9699919799 / utilities / pax . ht
ml # tag _ 20 _ 92 _
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[]\T1/ptm/m/n/10 Download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
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\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
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[]\T1/ptm/m/n/10 by de-fault all in-stalled pack-ages, [][][]\T1/pcr/m/n/10 ins
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[]\T1/ptm/m/n/10 Arguments such as []\T1/pcr/m/n/10 destdir []\T1/ptm/m/n/10 an
d []\T1/pcr/m/n/10 dependencies []\T1/ptm/m/n/10 to be
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\T1/ptm/m/n/10 passed to [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
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[]\T1/pcr/m/n/10 max_repo_cache_age []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 noCac
he []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 available.packages[][][]
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
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[]\T1/pcr/m/n/10 available = NULL []\T1/ptm/m/n/10 make a call to []\T1/pcr/m/n
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\T1/pcr/m/n/10 contriburl, method = method) []\T1/ptm/m/n/10 and hence by de-fa
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[]\T1/ptm/m/n/10 Take care when us-ing []\T1/pcr/m/n/10 dependencies []\T1/ptm/
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 with
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[][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pa
ckages[][][][]\T1/ptm/m/n/10 ,
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csb/ch3a.txt") 
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[][][]\T1/pcr/m/n/10 browseVignettes[][][] []\T1/ptm/m/n/10 for an HTML-based v
i-gnette browser; [][][]\T1/pcr/m/n/10 RShowDoc[][][]("\T1/ptm/m/sl/10 basename
\T1/pcr/m/n/10 ",
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/m/n/9 ' \T1/pcr/m/n/9 is much faster in the case of many installed packages:[]
 
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ata = DAT)))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the ac-tion when that menu i
s se-lected, or
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 winMenuDel []\T1/ptm/m/n/10 func-tion wil
l delete a menu and all of its items and sub-menus.
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[]\T1/ptm/m/n/10 arguments to []\T1/pcr/m/n/10 write.table[]\T1/ptm/m/n/10 : []
\T1/pcr/m/n/10 append[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 col.names[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 sep[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dec []\T1/ptm/m/n
/10 and
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[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. []\T1/pcr/m/n/10 file =
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[2200] (./KernSmooth-pkg.tex
Chapter 15.
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e = TRUE) 
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[2210]) (./MASS-pkg.tex
Chapter 16.
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 []\T1/pcr/m/n/9 dreg <- cbind(sin = sin(2*pi*beav2$hours/24), cos = cos(2*pi*b
eav2$hours/24))[] 
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.g
lm}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1477 ...{confint.glm}{confint-MASS}{confint.glm}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.n
ls}) has been already used, duplicate ignored
<to be read again> 
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l.1478 ...{confint.nls}{confint-MASS}{confint.nls}
                                                  
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[]\T1/ptm/m/n/10 further ar-gu-ments for []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10
 and graph-i-cal pa-ram-e-ters. Note that
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[]\T1/pcr/m/n/10 "gamma"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "geometric"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "log-normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lo
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[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "negative binomi
al"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
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SE, ...)[] 
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 []\T1/pcr/m/n/9 survreg(Surv(time, cens) ~ factor(pair) + treat, gehan, dist =
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[]\T1/ptm/m/n/10 The va-ri-ety of bar-ley ([]\T1/pcr/m/n/10 "manchuria"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "svansota"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "velv
et"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trebi" []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/10 lm.ridge(formula, data, subset, na.action, lambda = 0, model 
= FALSE, 
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 []\T1/pcr/m/n/10 mvrnorm(n = 1, mu, Sigma, tol = 1e-6, empirical = FALSE, EISP
ACK = FALSE) 
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 []\T1/pcr/m/n/10 negative.binomial(theta = stop("\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 theta\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 must be specified"), link = "log") 
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                   \relax 
l.6080 ...sical N, P, K Factorial Experiment}{npk}
                                                  
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 []     \T1/pcr/m/n/9 start = list(fixed=c(L75=c(48.7, -0.03), lsc=0.24)), verb
ose = TRUE)))[] 
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 []     \T1/pcr/m/n/10 dimen, abbrev = FALSE, ..., cex=0.7, type = c("std", "tr
ellis"))[] 
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 []     \T1/pcr/m/n/10 method = c("logistic", "probit", "loglog", "cloglog", "c
auchit"))[] 
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[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
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 []\T1/pcr/m/n/9 house.plr <- polr(Sat ~ Infl + Type + Cont, weights = Freq, da
ta = housing)[] 
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[]\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than 
[]\T1/pcr/m/n/10 min(p,
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 []\T1/pcr/m/n/9 fm <- lqs(stack.loss ~ ., data = stackloss, method = "S", nsam
p = "exact")[] 
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 []        \T1/pcr/m/n/10 method = c("plug-in", "predictive", "debiased", "looC
V"), ...)[] 
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l.7508 ... for Profiling glm Objects}{profile.glm}
                                                  
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
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 []    \T1/pcr/m/n/10 maxit = 20, acc = 1e-4, test.vec = "resid", lqs.control =
 NULL)[] 
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[]\T1/ptm/m/n/10 A func-tion to spec-ify the ac-tion to be taken if []\T1/pcr/m
/n/10 NA[]\T1/ptm/m/n/10 s are found. The
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 []\T1/pcr/m/n/10 summary(object, method = c("XtX", "XtWX"), correlation = FALS
E, ...)[] 
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[]\T1/ptm/m/n/10 ``Fold your arms! Which is on top'' (Fac-tor, with lev-els []\
T1/pcr/m/n/10 "R on L"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "L on R"[]\T1/ptm/m/n
/10 ,
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[]\T1/ptm/m/n/10 how much the stu-dent smokes. (Fac-tor, lev-els []\T1/pcr/m/n/
10 "Heavy"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Regul" []\T1/ptm/m/n/10 (reg-u-l
arly),
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 []\T1/pcr/m/n/10 theta.md(y, mu, dfr, weights, limit = 20, eps = .Machine$doub
le.eps^0.25) 
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 []\T1/pcr/m/n/10 theta.ml(y, mu, n, weights, limit = 10, eps = .Machine$double
.eps^0.25,[] 
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 []\T1/pcr/m/n/10 theta.mm(y, mu, dfr, weights, limit = 10, eps = .Machine$doub
le.eps^0.25)[] 
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[]\T1/ptm/m/n/10 The orig-i-nal data are avail-able at [][]$\T1/pcr/m/n/10 http
s : / / lib . stat . cmu . edu / datasets / 1993 .
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[2356]) (./Matrix-pkg.tex
Chapter 17.
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[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
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\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
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[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
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[]\T1/ptm/m/n/10 in gen-eral an ar-bi-trary num-ber of \T1/phv/m/n/10 R \T1/ptm
/m/n/10 ob-jects; here, when the first is
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\T1/ptm/m/n/10 an []\T1/pcr/m/n/10 "[][]abIndex[][][]" []\T1/ptm/m/n/10 vec-tor
, these ar-gu-ments will be con-cate-nated to a new
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[]\T1/ptm/m/n/10 these three meth-ods are sim-ply us-ing
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[]\T1/ptm/m/n/10 There are more meth-ods, no-tably also for []\T1/pcr/m/n/10 "[
][]sparseVector[][][]"[]\T1/ptm/m/n/10 's, see
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[]\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic
 func-tion
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 []   \T1/pcr/m/n/9 band(sm5, -1, 1)# "dsyMatrix": symmetric band preserves sym
metry property[] 
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[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
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 []\T1/pcr/m/n/9 s1 <- bandSparse(13, k = -c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
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 []\T1/pcr/m/n/9 s2 <- bandSparse(13, k =  c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
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 []\T1/pcr/m/n/9 lLis <- lapply(list(rpois(20, 2), rpois(20, 1), rpois(20, 3))[
c(1:3, 2:3, 3:2)],[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Fast version of Matrix :: .bd
iag() -- for the case of *many*  (k x k) matrices:[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @param lmat list(<mat1>, <mat
2>, ....., <mat_N>)  where each mat_j is a  k x k \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 matrix\TS1/pcr/m/n/9 '[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @return a sparse (N*k x N*k) 
matrix of class  \code{"\linkS4class{dgCMatrix}"}.[] 
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 []        \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 i :\TS1/pcr/m/n/9 ' \
T1/pcr/m/n/9 maybe there\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s a faster way (w/o matri
x indexing), but elegant?[] 
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 []        \T1/pcr/m/n/9 i = as.vector(matrix(0L:(M-1L), nrow=k)[, rep(seq_len(
N), each=k)]),[] 
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 []\T1/pcr/m/n/9 L. <- L; L.[1:2,1] <- TRUE; L.@x[1:2] <- FALSE; L. # has "zero
s" to drop0()[] 
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[]\T1/pcr/m/n/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more 
typ-i-cally ob-tained as the value of
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[]\T1/pcr/m/n/10 signature(from = "p?BunchKaufman", logarithm =
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
[2369]
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[]\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing
 from vir-tual class
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 []\T1/pcr/m/n/9 stopifnot(all.equal(as(A, "matrix"), as(Reduce(\TS1/cmtt/m/n/9
 `\T1/pcr/m/n/9 %*%\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 , e.bk.A), "matrix")))[] 
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l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods}
                                                  
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l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2}
                                              
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[]\T1/ptm/m/n/10 Our class def-i-ni-tion help pages men-tion-ing []\T1/pcr/m/n/
10 cbind2() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 rbind2() []\T1/ptm/m/n/10 met
h-ods:
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[]\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/pcr/m/n/10 CHMfactor []\
T1/ptm/m/n/10 is based on CHOLMOD's C-level
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[]\T1/pcr/m/n/10 signature(from = "CHMfactor", logarithm = "logical")[]\T1/ptm/
m/n/10 : be-
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[]\T1/pcr/m/n/10 signature(update = ., C = ., object = "CHMfactor")[]\T1/ptm/m/
n/10 : see
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[]\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g
ithub . com / DrTimothyAldenDavis /
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\T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p
cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
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 []    \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(e.ch.A, L1 %*%
 D %*% L1.))[] 
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 []    \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(E.ch.A, L  %*%
         L. ))[] 
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 []\T1/pcr/m/n/9 u2 <- update(ch.A, t(M), mult = sqrt(2)) # updating with cross
prod(M), not M[] 
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\T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt
ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and
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[]\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g
ithub . com / DrTimothyAldenDavis /
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length []\T1/pcr/m/n/10 n*n []\T1/ptm/m/
n/10 ([]\T1/pcr/m/n/10 Cholesky[]\T1/ptm/m/n/10 ) or []\T1/pcr/m/n/10 n*(n+1)/2
 []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 pCholesky[]\T1/ptm/m/n/10 ), where
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[]\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 CholeskyFactorization[][][][]\T1/pt
m/m/n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1
/ptm/m/n/10 , by class
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[]\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T
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0 : re-turns a
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[]\T1/pcr/m/n/10 signature(from = "p?Cholesky", logarithm = "logical")[]\T1/ptm
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
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[]\T1/ptm/m/n/10 a [][]fi-nite[][][] num-ber. The ma-trix that is fac-tor-ized 
is []\T1/pcr/m/n/10 A + Imult *
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\T1/pcr/m/n/10 - diag(abs(A))) []\T1/ptm/m/n/10 en-sures that []\T1/pcr/m/n/10 
A + Imult * diag(nrow(A)) []\T1/ptm/m/n/10 is di-
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[]\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing
 from vir-tual class
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\T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt
ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and
Underfull \hbox (badness 1917) in paragraph at lines 2320--2324
[]\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g
ithub . com / DrTimothyAldenDavis /
Underfull \hbox (badness 8132) in paragraph at lines 2320--2324
\T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p
cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing
[2386]
[2387]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2437--2437
 []     \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm =  TRUE, super = FALSE, L
DL =  TRUE),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2438--2438
 []          \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm =  TRUE, super = FALSE, L
DL = FALSE),[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2439--2439
 []          \T1/pcr/m/n/9 super0 = Cholesky(A4, perm =  TRUE, super =  TRUE   
          )),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2441--2441
 []     \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm = FALSE, super = FALSE, L
DL =  TRUE),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2442--2442
 []          \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm = FALSE, super = FALSE, L
DL = FALSE),[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2443--2443
 []          \T1/pcr/m/n/9 super0 = Cholesky(A4, perm = FALSE, super =  TRUE   
          )))[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2447--2447
 []\T1/pcr/m/n/9 rapply2 <- function(object, f, ...) rapply(object, f, , , how 
= "list", ...)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2388]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 2514--2514
 []          \T1/pcr/m/n/9 x = c(1, 6, 38, 10, 60, 103, -4, 6, -32, -247, -2, -
16, -128, -2, -67))[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2389]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 2610--2610
 []  \T1/pcr/m/n/9 show(a1 <- sparseMatrix(i= c(1:4),   j=c(2:4,1),   x = 2,   
 dimnames=dns))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 2614--2614
 []  \T1/pcr/m/n/9 show(a2 <- sparseMatrix(i= c(1:4,4), j=c(2:4,1:2), x = TRUE,
 dimnames=dns))[] 
[2390]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2621--2621
 []  \T1/pcr/m/n/9 a. <- sparseMatrix(i=4:1, j=1:4, dimnames=list(n4, n4), repr
="T") # no \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 x\TS1/pcr/m/n/9 '[] 
[2391]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colMeans}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2696 ...asA{colMeans}{colSums-methods}{colMeans}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colSums})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2704 \aliasA{colSums}{colSums-methods}{colSums}
                                                 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowMeans}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowSums})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2719 \aliasA{rowSums}{colSums-methods}{rowSums}
                                                 
Underfull \hbox (badness 2922) in paragraph at lines 2771--2775
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sparse, i.e., i
n-her-it-ing from
Underfull \hbox (badness 1728) in paragraph at lines 2771--2775
\T1/ptm/m/n/10 class [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/n/10 . 
Only ap-pli-ca-ble when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is in-her-it-ing fr
om a
Underfull \hbox (badness 1237) in paragraph at lines 2782--2785
[][][]\T1/pcr/m/n/10 dimnames[][][](x) []\T1/ptm/m/n/10 are only kept (as [][][
]\T1/pcr/m/n/10 names[][][](v)[]\T1/ptm/m/n/10 ) when the re-sult-ing []\T1/pcr
/m/n/10 v []\T1/ptm/m/n/10 is [][][]\T1/pcr/m/n/10 numeric[][][][]\T1/ptm/m/n/1
0 , since
[2392]
[2393]
Underfull \hbox (badness 3547) in paragraph at lines 2888--2891
[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2394]
[2395]
[2396]
[2397]
[2398]
Underfull \hbox (badness 10000) in paragraph at lines 3290--3293
[]\T1/pcr/m/n/10 signature(from = "denseLU", logarithm = "logical")[]\T1/ptm/m/
n/10 : com-
[2399]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3345--3345
 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 3352--3352
 []              \T1/pcr/m/n/9 new(  "pMatrix", Dim = c(n, n), Dimnames = c(dn[
1L], list(NULL)),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3355--3355
 []              \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = list(
NULL, NULL),[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 3358--3358
 []              \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = c(lis
t(NULL), dn[2L]),[] 
[2400]
Underfull \hbox (badness 7379) in paragraph at lines 3486--3488
[]\T1/pcr/m/n/10 signature(x = "dgCMatrix")[]\T1/ptm/m/n/10 : com-putes the LU 
de-com-po-si-tion of a square
[2401]
[2402]
[2403]
Underfull \hbox (badness 4846) in paragraph at lines 3707--3711
[]\T1/ptm/m/n/10 Note that both []\T1/pcr/m/n/10 new(.) []\T1/ptm/m/n/10 and []
[][]\T1/pcr/m/n/10 spMatrix[][][] []\T1/ptm/m/n/10 con-struc-tors for []\T1/pcr
/m/n/10 "dgTMatrix" []\T1/ptm/m/n/10 (and other
Underfull \hbox (badness 2717) in paragraph at lines 3712--3716
[]\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in
 more than one pos-si-ble
[2404]
Underfull \hbox (badness 5231) in paragraph at lines 3757--3762
[]\T1/ptm/m/n/10 Construct a for-mally di-ag-o-nal [][][]\T1/pcr/m/n/10 Matrix[
][][][]\T1/ptm/m/n/10 , i.e., an ob-ject in-her-it-ing from vir-tual class
Overfull \hbox (84.78088pt too wide) in paragraph at lines 3768--3768
 []\T1/pcr/m/n/10 .sparseDiagonal(n, x = NULL, uplo = "U", shape = "t", unitri 
= TRUE, kind, cols)[] 
[2405]
Underfull \hbox (badness 10000) in paragraph at lines 3824--3827
[]\T1/pcr/m/n/10 .trDiagonal() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 .symDiagon
al() []\T1/ptm/m/n/10 are sim-ple wrap-pers, for
Underfull \hbox (badness 6792) in paragraph at lines 3824--3827
[]\T1/pcr/m/n/10 .sparseDiagonal(shape = "t") []\T1/ptm/m/n/10 and []\T1/pcr/m/
n/10 .sparseDiagonal(shape = "s")[]\T1/ptm/m/n/10 , re-spec-
[2406]
Underfull \hbox (badness 3646) in paragraph at lines 3901--3904
[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 dimnames[][][][]\T1/ptm/m/n/10 , a []
[][]\T1/pcr/m/n/10 list[][][][]\T1/ptm/m/n/10 , see the [][][]\T1/pcr/m/n/10 Ma
trix[][][] []\T1/ptm/m/n/10 class de-scrip-tion. Typ-i-cally
Underfull \hbox (badness 6542) in paragraph at lines 3936--3940
[]\T1/pcr/m/n/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these gr
oup meth-ods re-turn a
Underfull \hbox (badness 4518) in paragraph at lines 3945--3951
[]\T1/pcr/m/n/10 signature(e1 = "ddiMatrix", e2="denseMatrix")[]\T1/ptm/m/n/10 
: the re-sult is from class
[2407]
Underfull \hbox (badness 10000) in paragraph at lines 3952--3956
[]\T1/pcr/m/n/10 (object = "diagonalMatrix")[]\T1/ptm/m/n/10 : Re-turns an ob-j
ect of S3 class
Underfull \hbox (badness 2318) in paragraph at lines 3962--3966
[][][]\T1/pcr/m/n/10 Diagonal[][][]() []\T1/ptm/m/n/10 as con-struc-tor of thes
e ma-tri-ces, and [][][]\T1/pcr/m/n/10 isDiagonal[][][][]\T1/ptm/m/n/10 . [][][
]\T1/pcr/m/n/10 ddiMatrix[][][] []\T1/ptm/m/n/10 and
[2408]
[2409]
[2410]
Underfull \hbox (badness 10000) in paragraph at lines 4219--4221
[]\T1/pcr/m/n/10 signature(x = "dMatrix", digits = "numeric")[]\T1/ptm/m/n/10 :
 this group con-tains
[2411]
[2412]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 4360--4360
 []\T1/pcr/m/n/9 stopifnot(all.equal(S9p0, S9p))# same as as default, but diffe
rent from the random one[] 
[2413]
Underfull \hbox (badness 2469) in paragraph at lines 4474--4477
[]\T1/pcr/m/n/10 signature(x = "dpoMatrix")[]\T1/ptm/m/n/10 : Re-turns the [][]
[]\T1/pcr/m/n/10 determinant[][][] []\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 x[]\T1/
ptm/m/n/10 , via
[2414]
Underfull \hbox (badness 10000) in paragraph at lines 4497--4502
[]\T1/ptm/m/n/10 Currently the va-lid-ity meth-ods for these classes such as
Underfull \hbox (badness 2020) in paragraph at lines 4497--4502
[][][]\T1/pcr/m/n/10 getValidity[][][](getClass("dpoMatrix")) []\T1/ptm/m/n/10 
for ef-fi-ciency rea-sons only check the di-
Underfull \hbox (badness 1748) in paragraph at lines 4503--4512
\T1/pcr/m/n/10 error=identity), "error") []\T1/ptm/m/n/10 . In-deed, when \T1/p
tm/m/it/10 co-erc-ing \T1/ptm/m/n/10 to these classes, a ver-sion
Underfull \hbox (badness 1590) in paragraph at lines 4503--4512
\T1/ptm/m/n/10 of [][][]\T1/pcr/m/n/10 Cholesky[][][]() []\T1/ptm/m/n/10 or [][
][]\T1/pcr/m/n/10 chol[][][]() []\T1/ptm/m/n/10 is typ-i-cally used, e.g., see 
[]\T1/pcr/m/n/10 selectMethod("coerce",
Underfull \hbox (badness 6675) in paragraph at lines 4559--4566
[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 Matrix[][][][]\T1/ptm/m/n/10 , typ-i-ca
lly in-her-it-ing from vir-tual class [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]
\T1/ptm/m/n/10 .
Underfull \hbox (badness 6493) in paragraph at lines 4559--4566
[][][]\T1/pcr/m/n/10 denseMatrix[][][] []\T1/ptm/m/n/10 and tra-di-tional vec-t
ors and ma-tri-ces are co-erced to
[2415]
Underfull \hbox (badness 10000) in paragraph at lines 4574--4582
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing if the re-sult must in-herit from vi
r-tual class
Underfull \hbox (badness 1365) in paragraph at lines 4574--4582
[][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 . If []\T1/pcr/m/n/10 
FALSE []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 in-her-its from 
[][][]\T1/pcr/m/n/10 RsparseMatrix[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4597--4600
[]\T1/ptm/m/n/10 Function [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/
10 , for con-struct-ing ob-jects in-her-it-ing from vir-tual class
[2416]
Underfull \hbox (badness 10000) in paragraph at lines 4641--4645
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsCMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 2103) in paragraph at lines 4641--4645
[]\T1/pcr/m/n/10 new("dsTMatrix", ...)[]\T1/ptm/m/n/10 , or au-to-mat-i-cally v
ia e.g., []\T1/pcr/m/n/10 as(*, "symmetricMatrix")[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1571) in paragraph at lines 4691--4694
[]\T1/pcr/m/n/10 signature(x = "dsCMatrix", pivot = "logical")[]\T1/ptm/m/n/10 
: Re-turns (and stores) the
[2417]
[2418]
Underfull \hbox (badness 1221) in paragraph at lines 4834--4837
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "dMatrix"[]\T1/ptm/m/n/10 , by class []
\T1/pcr/m/n/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/pcr/m/n/10 "sparse
Matrix"[]\T1/ptm/m/n/10 , by classes
Underfull \hbox (badness 1400) in paragraph at lines 4844--4847
[]\T1/pcr/m/n/10 signature(x = "dsRMatrix", uplo = "character")[]\T1/ptm/m/n/10
 : if []\T1/pcr/m/n/10 uplo ==
[2419]
Underfull \hbox (badness 10000) in paragraph at lines 4896--4898
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsyMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 1365) in paragraph at lines 4932--4935
[]\T1/pcr/m/n/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/10
 , or []\T1/pcr/m/n/10 x = "dsyMatrix"
[2420]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4978--4978
 []\T1/pcr/m/n/9 stopifnot(all(S1 == S2)) # equal "seen as matrix", but differ 
internally :[] 
[2421]
[2422]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5084--5084
 []\T1/pcr/m/n/9 U5 <- new("dtCMatrix", i= c(1L, 0:3), p=c(0L,0L,0:2, 5L), Dim 
= c(5L, 5L),[] 
Underfull \hbox (badness 3635) in paragraph at lines 5139--5143
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ddenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Cla
ss
Underfull \hbox (badness 10000) in paragraph at lines 5148--5151
[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
Underfull \hbox (badness 10000) in paragraph at lines 5151--5155
[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/n
/10 : the
[2423]
[2424]
[2425]
[2426]
Underfull \hbox (badness 10000) in paragraph at lines 5399--5401
[]\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir
-tual class
Overfull \hbox (29.27832pt too wide) in paragraph at lines 5418--5418
 []    \T1/pcr/m/n/10 all.equal(as(x, "matrix"), as(Reduce(\TS1/cmtt/m/n/10 `\T
1/pcr/m/n/10 %*%\TS1/cmtt/m/n/10 `\T1/pcr/m/n/10 , expand2(y)), "matrix")) 
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 [] [] 
[2427]
Underfull \hbox (badness 7064) in paragraph at lines 5477--5494
[]\T1/pcr/m/n/10 signature(x = "p?BunchKaufman")[]\T1/ptm/m/n/10 : ex-pands the
 fac-tor-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 =
Underfull \hbox (badness 3000) in paragraph at lines 5506--5513
[]\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : ex-pands the fac-to
r-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 = \OML/cmm/m/it/10 P[]LU$ \T1/pt
m/m/n/10 as
Underfull \hbox (badness 2735) in paragraph at lines 5522--5529
[]\T1/pcr/m/n/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/
10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L)[]\T1/p
tm/m/n/10 .
Underfull \hbox (badness 1337) in paragraph at lines 5529--5544
[]\T1/pcr/m/n/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/1
0 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L, U,
Underfull \hbox (badness 2680) in paragraph at lines 5529--5544
\T1/pcr/m/n/10 Q)[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 expand(x)[["Q"]] []\T1/ptm
/m/n/10 and []\T1/pcr/m/n/10 expand2(x)[["P2."]] []\T1/ptm/m/n/10 rep-re-sent t
he same per-
Underfull \hbox (badness 5374) in paragraph at lines 5529--5544
\T1/ptm/m/n/10 mu-ta-tion ma-trix $\OML/cmm/m/it/10 P[]$ \T1/ptm/m/n/10 but hav
e op-po-site []\T1/pcr/m/n/10 margin []\T1/ptm/m/n/10 slots and in-verted []\T1
/pcr/m/n/10 perm []\T1/ptm/m/n/10 slots.
Underfull \hbox (badness 2073) in paragraph at lines 5544--5549
[]\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/10
 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(L, U, P)[]\T1/
ptm/m/n/10 .
[2428]
[2429]
[2430]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5752--5752
 []\T1/pcr/m/n/9 str(pores <- readMM(system.file("external/pores_1.mtx", packag
e = "Matrix")))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5753--5753
 []\T1/pcr/m/n/9 str(utm   <- readHB(system.file("external/utm300.rua" , packag
e = "Matrix")))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5754--5754
 []\T1/pcr/m/n/9 str(lundA <- readMM(system.file("external/lund_a.mtx" , packag
e = "Matrix")))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5755--5755
 []\T1/pcr/m/n/9 str(lundA <- readHB(system.file("external/lund_a.rsa" , packag
e = "Matrix")))[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 5756--5756
 []\T1/pcr/m/n/9 ## https://math.nist.gov/MatrixMarket/data/Harwell-Boeing/coun
terx/counterx.htm[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5757--5757
 []\T1/pcr/m/n/9 str(jgl   <- readMM(system.file("external/jgl009.mtx" , packag
e = "Matrix")))[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 5763--5763
 []\T1/pcr/m/n/9 u. <- url("https://www.cise.ufl.edu/research/sparse/RB/Boeing/
msc00726.tar.gz")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5768--5768
 []\T1/pcr/m/n/9 ## Store as MatrixMarket (".mtx") file, here inside temporary 
dir./folder:[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5771--5771
 []\T1/pcr/m/n/9 file.info(MMfile)[,c("size", "ctime")] # (some confirmation of
 the file\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s)[] 
[2431]
Overfull \hbox (58.38037pt too wide) in paragraph at lines 5781--5781
 []\T1/pcr/m/n/9 ## has columns (i, j, x) -> we can use via do.call() as argume
nts to sparseMatrix():[] 
[2432]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5843--5843
 []    \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans =  TRUE, left =  TRUE),  
crossprod(L, y))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5844--5844
 []    \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans =  TRUE, left = FALSE), t
crossprod(y, L))[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 5923--5923
 []\T1/pcr/m/n/10 .diag2dense(from, kind = ".", shape = "t", packed = FALSE, up
lo = "U")[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 5925--5925
 []\T1/pcr/m/n/10 .m2dense(from, class = ".ge", uplo = "U", diag = "N", trans =
 FALSE)[] 
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 []\T1/pcr/m/n/10 .diag2sparse(from, kind = ".", shape = "t", repr = "C", uplo 
= "U")[] 
[2433]
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 []\T1/pcr/m/n/10 .m2sparse(from, class = ".gC", uplo = "U", diag = "N", trans 
= FALSE)[] 
Underfull \hbox (badness 10000) in paragraph at lines 6000--6002
[]\T1/ptm/m/n/10 a string in []\T1/pcr/m/n/10 c("trace", "sumLog", "prod", "min
", "max",
[2434]
Underfull \hbox (badness 10000) in paragraph at lines 6073--6079
[][]\T1/pcr/m/n/10 .solve.dgC.*(a, b)[]\T1/ptm/b/n/10 :  []\T1/pcr/m/n/10 .solv
e.dgC.lu(a, b) []\T1/ptm/m/n/10 needs a square ma-trix []\T1/pcr/m/n/10 a[]\T1/
ptm/m/n/10 .
Underfull \hbox (badness 10000) in paragraph at lines 6073--6079
[]\T1/pcr/m/n/10 .solve.dgC.qr(a, b) []\T1/ptm/m/n/10 needs a ``long'' ma-trix 
[]\T1/pcr/m/n/10 a[]\T1/ptm/m/n/10 , with []\T1/pcr/m/n/10 nrow(a) >= ncol(a)[]
\T1/ptm/m/n/10 .
[2435]
Underfull \hbox (badness 10000) in paragraph at lines 6087--6096
[][]\T1/pcr/m/n/10 .updateCHMfactor(object, parent, mult)[]\T1/ptm/b/n/10 :  []
\T1/pcr/m/n/10 .updateCHMfactor []\T1/ptm/m/n/10 up-
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\T1/ptm/m/n/10 dates []\T1/pcr/m/n/10 object []\T1/ptm/m/n/10 with the re-sult 
of Cholesky fac-tor-iz-ing []\T1/pcr/m/n/10 F(parent) + mult[1] *
Underfull \hbox (badness 2443) in paragraph at lines 6087--6096
\T1/pcr/m/n/10 diag(nrow(parent))[]\T1/ptm/m/n/10 , i.e., []\T1/pcr/m/n/10 F(pa
rent) []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 mult[1] []\T1/ptm/m/n/10 times the
 iden-tity ma-trix,
[2436]
[2437]
[2438]
[2439]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.image}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6399 \aliasA{image}{image-methods}{image}
                                           
[2440]
[2441]
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[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
][]\T1/pcr/m/n/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use
Overfull \hbox (47.58038pt too wide) in paragraph at lines 6514--6514
 []\T1/pcr/m/n/9 stopifnot(!is.null(leg <- imgC$legend), is.list(leg$right)) # 
failed for 2 days ..[] 
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 []\T1/pcr/m/n/9 ## Using (xlim,ylim) has advantage : matrix dimension and (col
/row) indices:[] 
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 [] \T1/pcr/m/n/9 I2 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE,    
    border.col=NA)[] 
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 [] \T1/pcr/m/n/9 I3 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd
=2, border.col=NA)[] 
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 []\T1/pcr/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor
der.col = adjustcolor("skyblue", 1/2))[] 
[2442]
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 []\T1/pcr/m/n/9 image(USCounties, useRaster = TRUE) # should not suffer from a
nti-aliasing[] 
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 []   \T1/pcr/m/n/9 ## and now look at the *.png image in a viewer you can easi
ly zoom in and out[] 
[2443]
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[]\T1/pcr/m/n/10 signature(x = "indMatrix", y = "Matrix") []\T1/ptm/m/n/10 and 
oth-ers listed by
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[]\T1/pcr/m/n/10 showMethods("%*%", classes = "indMatrix")[]\T1/ptm/m/n/10 : ma
-trix prod-ucts im-ple-mented
Underfull \hbox (badness 10000) in paragraph at lines 6687--6690
[]\T1/pcr/m/n/10 signature(from = "numeric", to = "indMatrix")[]\T1/ptm/m/n/10 
: sup-port-ing typ-i-cal
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[]\T1/pcr/m/n/10 signature(from = "list", to = "indMatrix")[]\T1/ptm/m/n/10 : s
up-port-ing []\T1/pcr/m/n/10 indMatrix
[2444]
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[]\T1/pcr/m/n/10 signature(x = "indMatrix")[]\T1/ptm/m/n/10 : row and
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[]\T1/pcr/m/n/10 signature(X = "indMatrix", Y = "indMatrix")[]\T1/ptm/m/n/10 : 
Kro-necker prod-uct of
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[]\T1/ptm/m/n/10 Fabian Scheipl at `\T1/pcr/m/n/10 uni-muenchen.de\T1/ptm/m/n/1
0 ', build-ing on the ex-ist-ing class [][][]\T1/pcr/m/n/10 pMatrix[][][] []\T1
/ptm/m/n/10 af-ter
Underfull \hbox (badness 1253) in paragraph at lines 6717--6726
\T1/ptm/m/n/10 a nice hike's con-ver-sa-tion with Mar-tin Maech-ler. Meth-ods f
or [][][]\T1/pcr/m/n/10 crossprod[][][](x, y) []\T1/ptm/m/n/10 and
[2445]
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[]\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be
 a per-mu-ta-tion of
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[]\T1/pcr/m/n/10 invertPerm(p) []\T1/ptm/m/n/10 re-turns an in-te-ger vec-tor o
f length []\T1/pcr/m/n/10 length(p) []\T1/ptm/m/n/10 such that
Underfull \hbox (badness 4441) in paragraph at lines 6837--6841
[]\T1/pcr/m/n/10 p[invertPerm(p)] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 invertP
erm(p)[p] []\T1/ptm/m/n/10 are both []\T1/pcr/m/n/10 seq_along(p)[]\T1/ptm/m/n/
10 , i.e., the
[2446]
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 []\T1/pcr/m/n/9 ## Product of transpositions (1 2)(2 1)(4 3)(6 8)(10 1) = (3 4
)(6 8)(1 10)[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6888 \aliasA{anyNA}{is.na-methods}{anyNA}
                                           
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.finite
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6895 ...asA{is.finite}{is.na-methods}{is.finite}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.infini
te}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6903 ...is.infinite}{is.na-methods}{is.infinite}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.na}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6911 \aliasA{is.na}{is.na-methods}{is.na}
                                           
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.nan}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6918 \aliasA{is.nan}{is.na-methods}{is.nan}
                                             
[2447]
[2448]
[2449]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.isSymmetr
ic}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7077 ...etric}{isSymmetric-methods}{isSymmetric}
                                                  
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 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub
le.eps, tol1 = 8 * tol, ...)[] 
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 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub
le.eps, ...)[] 
[2450]
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 []\T1/pcr/m/n/9 isSymmetric(as(M, "generalMatrix")) # still symmetric, even if
 not "formally"[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 7185--7185
 []\T1/pcr/m/n/9 showMethods("isSymmetric", includeDefs = TRUE) # includes S3 g
eneric from base[] 
[2451]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 7268--7268
 []\T1/pcr/m/n/9 isTriangular(as(M, "generalMatrix")) # still triangular, even 
if not "formally"[] 
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 []\T1/pcr/m/n/10 KhatriRao(X, Y = X, FUN = "*", sparseY = TRUE, make.dimnames 
= FALSE) 
[2452]
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 []\T1/pcr/m/n/9 stopifnot(all(K1 <- KhatriRao(nd, zm) == 0), identical(dim(K1)
, c(12L, 4L)),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7372--7372
 []          \T1/pcr/m/n/9 all(K2 <- KhatriRao(zm, nd) == 0), identical(dim(K2)
, c(12L, 4L)))[] 
[2453]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7379--7379
 []   \T1/pcr/m/n/9 identical(dimnames(KhatriRao(m, d0, make.dimnames=TRUE)), d
imnames(Kmd)))[] 
[2454]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kronecker
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7453 ...kronecker}{kronecker-methods}{kronecker}
                                                  
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[]\T1/pcr/m/n/10 ldenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
[2455]
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[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2456
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,ndiMatr
ix,Matrix.Rdash.method}) has been already used, duplicate ignored
<argument> ...shipout:D \box_use:N \l_shipout_box 
                                                  \__shipout_drop_firstpage_...
l.7689 C
        lass \code{"\LinkA{sparseMatrix}{sparseMatrix.Rdash.class}"}, by cla...
]
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[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ldenseMatrix"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 4229) in paragraph at lines 7736--7741
\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 7744--7747
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2457]
Underfull \hbox (badness 10000) in paragraph at lines 7801--7811
[]\T1/pcr/m/n/10 lsTMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltTMatrix[]\T
1/ptm/m/n/10 ) or in com-pressed column-oriented form (class
Underfull \hbox (badness 1242) in paragraph at lines 7801--7811
[][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pc
r/m/n/10 lgCMatrix[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lsCMatrix[]\T1/ptm/m/n/10
 , and []\T1/pcr/m/n/10 ltCMatrix[]\T1/ptm/m/n/10 ) or--\T1/ptm/m/it/10 rarely\
T1/ptm/m/n/10 --in
[2458]
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[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2459]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2460]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2461]
[2462]
[2463]
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[]\T1/ptm/m/n/10 vector of all non-zero en-tries of []\T1/pcr/m/n/10 x[]\T1/ptm
/m/n/10 ; ex-ists \T1/ptm/b/n/10 only \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 as(x
,
Underfull \hbox (badness 1490) in paragraph at lines 8289--8291
[]\T1/pcr/m/n/10 mat2triplet() []\T1/ptm/m/n/10 is con-cep-tu-ally the \T1/ptm/
m/it/10 in-verse \T1/ptm/m/n/10 func-tion of [][][]\T1/pcr/m/n/10 spMatrix[][][
] []\T1/ptm/m/n/10 and (one case of)
[2464]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rpcent.*
.Rpcent.}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8310 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8384 ...A{crossprod}{matmult-methods}{crossprod}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrosspro
d}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8460 ...tcrossprod}{matmult-methods}{tcrossprod}
                                                  
Underfull \hbox (badness 1881) in paragraph at lines 8546--8552
\T1/ptm/m/n/10 ally im-ple-mented ef-fi-ciently with-out com-put-ing [][][]\T1/
pcr/m/n/10 t[][][](.)[]\T1/ptm/m/n/10 's un-nec-es-sar-ily. They also re-turn
[2465]
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[]\T1/pcr/m/n/10 signature(x = "dgeMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
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[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-tures (use
Underfull \hbox (badness 3557) in paragraph at lines 8618--8623
[]\T1/pcr/m/n/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-tr
ix mul-ti-pli-ca-tion. Mul-ti-
Underfull \hbox (badness 6608) in paragraph at lines 8623--8627
\T1/ptm/m/n/10 sig-na-tures, use []\T1/pcr/m/n/10 showMethods("crossprod", clas
s = "dgeMatrix")[]\T1/ptm/m/n/10 , ma-trix
Underfull \hbox (badness 1552) in paragraph at lines 8633--8634
[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-
[2466]
[2467]
[2468]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8856 \aliasA{det}{Matrix-class}{det}
                                      
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[]\T1/pcr/m/n/10 signature(x = "Matrix", value = "list")[]\T1/ptm/m/n/10 : set 
the []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 to a
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[2469]
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[]\T1/pcr/m/n/10 signature(from = "ANY", to = "Matrix")[]\T1/ptm/m/n/10 : This 
re-lies on a cor-rect
[2470]
[2471]
Underfull \hbox (badness 10000) in paragraph at lines 9125--9129
[]\T1/pcr/m/n/10 CholeskyFactorization[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Bunch
KaufmanFactorization[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 9148--9150
[]\T1/pcr/m/n/10 signature(x = "MatrixFactorization", logarithm =
Underfull \hbox (badness 10000) in paragraph at lines 9165--9168
[]\T1/pcr/m/n/10 signature(obj = "MatrixFactorization")[]\T1/ptm/m/n/10 : re-tu
rns []\T1/pcr/m/n/10 obj []\T1/ptm/m/n/10 with
Underfull \hbox (badness 3019) in paragraph at lines 9174--9177
[]\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 CholeskyFactorization[]\T
1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 Cholesky[][][][]\T1/ptm/m/n/10 , [][
][]\T1/pcr/m/n/10 pCholesky[][][][]\T1/ptm/m/n/10 , and
[2472]
Underfull \hbox (badness 10000) in paragraph at lines 9178--9180
[]\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 BunchKaufmanFactorization
[]\T1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 BunchKaufman[][][] []\T1/ptm/m/n
/10 and
Underfull \hbox (badness 10000) in paragraph at lines 9193--9196
[]\T1/ptm/m/n/10 Generic func-tions [][][]\T1/pcr/m/n/10 expand1[][][] []\T1/pt
m/m/n/10 and [][][]\T1/pcr/m/n/10 expand2[][][] []\T1/ptm/m/n/10 for con-struct
-ing ma-trix fac-tors from
Underfull \hbox (badness 1062) in paragraph at lines 9222--9225
[]\T1/pcr/m/n/10 ndenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
Underfull \hbox (badness 6063) in paragraph at lines 9254--9257
[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2473]
Underfull \hbox (badness 3312) in paragraph at lines 9311--9313
[]\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/pcr/m/n/10 X <- (X + t(X))/2 []
\T1/ptm/m/n/10 should be done, af-ter []\T1/pcr/m/n/10 X <-
[2474]
[2475]
Overfull \hbox (85.38034pt too wide) in paragraph at lines 9414--9414
 []   \T1/pcr/m/n/9 all.equal(n.A.m, unname(as.matrix(n.A$mat)), tolerance = 1e
-15)# seen rel.d.= 1.46e-16[] 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(ncr, ncF))# norm type does not matter at a
ll in this example[] 
[2476]
Underfull \hbox (badness 2635) in paragraph at lines 9507--9512
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ndenseMatrix"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 4229) in paragraph at lines 9507--9512
\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 9515--9518
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2477]
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[]\T1/pcr/m/n/10 signature(from = "matrix", to = "nMatrix")[]\T1/ptm/m/n/10 : N
ote that these co-er-cions
[2478]
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[]\T1/ptm/m/n/10 fast sim-
[2479]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9738 \aliasA{norm}{norm-methods}{norm}
                                        
[2480]
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 []\T1/pcr/m/n/9 A <- sparseMatrix(i, j, x = x)                      ##  8 x 10
 "dgCMatrix"[] 
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 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
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 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
Underfull \hbox (badness 2401) in paragraph at lines 9880--9890
[]\T1/ptm/m/n/10 These can be stored in the ``triplet'' form ([][][]\T1/pcr/m/n
/10 TsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pcr/m/n/10 ngTMatri
x[]\T1/ptm/m/n/10 ,
[2481]
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[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2482]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2483]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2484]
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[]\T1/ptm/m/n/10 typically a []\T1/pcr/m/n/10 "packedMatrix"[]\T1/ptm/m/n/10 , 
though
[2485]
[2486]
[2487]
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[]\T1/pcr/m/n/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and ot
h-ers listed by
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[]\T1/pcr/m/n/10 showMethods("%*%", classes = "pMatrix")[]\T1/ptm/m/n/10 : ma-t
rix prod-ucts im-ple-mented
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[]\T1/pcr/m/n/10 signature(from = "numeric", to = "pMatrix")[]\T1/ptm/m/n/10 : 
sup-port-ing typ-i-cal
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[]\T1/pcr/m/n/10 signature(a = "pMatrix", b = "missing")[]\T1/ptm/m/n/10 : the 
in-verse per-mu-ta-tion ma-trix,
[2488]
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 []               \T1/pcr/m/n/10 col.names, note.dropping.colnames = TRUE, uniD
iag = TRUE,[] 
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 []\T1/pcr/m/n/10 printSpMatrix(x, digits = NULL, maxp = max(100L, getOption("m
ax.print")),[] 
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 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
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 []\T1/pcr/m/n/10 printSpMatrix2(x, digits = NULL, maxp = max(100L, getOption("
max.print")),[] 
[2489]
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 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
Underfull \hbox (badness 3989) in paragraph at lines 10499--10509
[]\T1/ptm/m/n/10 logical or string spec-i-fy-ing if and how col-umn names of []
\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 should
Underfull \hbox (badness 10000) in paragraph at lines 10499--10509
\T1/ptm/m/n/10 be printed, pos-si-bly ab-bre-vi-ated. The de-fault is taken fro
m
[2490]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10601 \aliasA{qr}{qr-methods}{qr}
                                   
[2491]
[2492]
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 []    \T1/pcr/m/n/9 all.equal(qr.coef(qr.A1, b), drop(solve(crossprod(A1), cro
ssprod(A1, b))))[] 
[2493]
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 []    \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 qr.coef\TS1/pcr/m/n/9 ' \
T1/pcr/m/n/9 computes unique least squares solution of "nearby" problem[] 
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 []    \T1/pcr/m/n/9 ## Z x = b for some full rank Z ~ A, currently without war
ning {FIXME} ![] 
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2494]
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[]\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/pcr/m/n/10 
qr[][][](x, tol,
Underfull \hbox (badness 10000) in paragraph at lines 10862--10865
[]\T1/ptm/m/n/10 is for back com-pat-i-bil-ity; for dense []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 , it cor-re-sponds to
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[2496]
Overfull \hbox (85.38034pt too wide) in paragraph at lines 10959--10959
 []\T1/pcr/m/n/9 ## The meaning of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 tol\TS1/pcr/m/
n/9 ' \T1/pcr/m/n/9 for method="qrLINPACK" and *dense* x is not entirely "scale
 free"[] 
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 []\T1/pcr/m/n/9 sapply(meths, function(.m.) rankMatrix(M15, method = .m., tol 
= 1e-7)) # all 14[] 
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 []\T1/pcr/m/n/9 (st1 <- system.time(r1 <- rankMatrix(L)))                # war
ning+ ~1.5 sec (2013)[] 
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 []\T1/pcr/m/n/9 (st2 <- system.time(r2 <- rankMatrix(L, method = "qr"))) # con
siderably faster![] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11002 \aliasA{rcond}{rcond-methods}{rcond}
                                            
[2497]
[2498]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 11118--11118
 []\T1/pcr/m/n/9 rcond(x2 <- cbind(x1, 2:11))# practically 0, since x2 does not
 have full rank[] 
[2499]
[2500]
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\T1/ptm/m/n/10 dices, if not []\T1/pcr/m/n/10 symmetric [][]sample.int[][][](nr
ow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/pcr/m/n/10 rand.x []\T1/ptm/m/n
/10 is not
[2501]
[2502]
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[]\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 SchurFactorization[][][][]\T1/ptm/m
/n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1/pt
m/m/n/10 , by class
[2503]
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[]\T1/pcr/m/n/10 signature(from = "Schur", logarithm = "logical")[]\T1/ptm/m/n/
10 : com-putes
[2504]
[2505]
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 []    \T1/pcr/m/n/9 all.equal(e1, e3[order(Mod(e3), decreasing = TRUE)], toler
ance = 1e-13)[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11630 \aliasA{solve}{solve-methods}{solve}
                                            
[2506]
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 []\T1/pcr/m/n/10 solve(a, b, system = c("A", "LDLt", "LD", "DLt", "L", "Lt", "
D", "P", "Pt"), ...)[] 
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[]\T1/ptm/m/n/10 a vec-tor, [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/
n/10 , ma-trix, or [][][]\T1/pcr/m/n/10 Matrix[][][] []\T1/ptm/m/n/10 sat-is-fy
-ing []\T1/pcr/m/n/10 NROW(b) ==
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[]\T1/ptm/m/n/10 Methods for dense []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are buil
t on 14 LA-PACK rou-tines: class []\T1/pcr/m/n/10 d..Matrix[]\T1/ptm/m/n/10 , w
here
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[]\T1/ptm/m/n/10 Methods for sparse []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are bui
lt on CXS-parse rou-tines []\T1/pcr/m/n/10 cs_lsolve[]\T1/ptm/m/n/10 , []\T1/pc
r/m/n/10 cs_usolve[]\T1/ptm/m/n/10 , and
[2507]
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 []\T1/pcr/m/n/9 image(ia0 <- solve(a, tol = 0)) # checker board, dense [but re
ally, a is singular!][] 
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 []  \T1/pcr/m/n/9 ## Fails on 32-bit [Fedora 19, R 3.0.2] from Matrix 1.1-0 on
 [FIXME ??] only[] 
[2508]
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[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu
la and data frame
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 []    \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveC
sparse)[] 
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 []    \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveC
sparse,[] 
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[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
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[]\T1/ptm/m/n/10 character string or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or 
(co-er-ca-ble to)
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[]\T1/pcr/m/n/10 "[][]sparseMatrix[][][]"[]\T1/ptm/m/n/10 , spec-i-fy-ing the c
on-trasts to be ap-plied to the
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[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
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[]\T1/pcr/m/n/10 sparse.model.matrix []\T1/ptm/m/n/10 has been changed to []\T1
/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , 2010-07, for
[2509]
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
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[]\T1/pcr/m/n/10 model.Matrix(sparse = TRUE) []\T1/ptm/m/n/10 from pack-age [][
]\T1/ptm/b/n/10 Ma-trix-Mod-els[][] \T1/ptm/m/n/10 may be nowa-days be
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\T1/ptm/m/n/10 prefer-able to []\T1/pcr/m/n/10 sparse.model.matrix[]\T1/ptm/m/n
/10 , as []\T1/pcr/m/n/10 model.Matrix []\T1/ptm/m/n/10 re-turns an ob-ject of 
class
[2510]
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0, 0),[] 
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop=FALSE),"CsparseMatrix"), dim(M)
 == c(3, 0),[] 
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f12, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0,12),[] 
[2511]
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[]\T1/pcr/m/n/10 signature(from = "sparseLU", logarithm = "logical")[]\T1/ptm/m
/n/10 : com-
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 []\T1/pcr/m/n/9 A <- as(readMM(system.file("external", "pores_1.mtx", package 
= "Matrix")),[] 
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
[2512]
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(dn[1L
], list(NULL)),[] 
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
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[]\T1/ptm/m/n/10 This in-ter-face is rec-om-mended over di-rect con-struc-tion 
via calls such as
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 []             \T1/pcr/m/n/10 symmetric = FALSE, triangular = FALSE, index1 = 
TRUE,[] 
[2513]
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\T1/ptm/m/n/10 of the sparse ma-trix re-sult, i.e., spec-i-fy-ing one of the vi
r-tual classes
[2514]
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[]\T1/ptm/m/n/10 The stan-dard \T1/phv/m/n/10 R [][][]\T1/pcr/m/n/10 xtabs[][][
](*, sparse=TRUE)[]\T1/ptm/m/n/10 , for sparse ta-bles and
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 []\T1/pcr/m/n/9 (A <- sparseMatrix(i, j, x = x))                    ##  8 x 10
 "dgCMatrix"[] 
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 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
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 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
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 []\T1/pcr/m/n/9 (AA <- sparseMatrix(c(1,3:8), c(2,9,6:10), x = 7 * (1:7), dims
 = c(10,20)))[] 
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 []\T1/pcr/m/n/9 ## i, j and x can be in an arbitrary order, as long as they ar
e consistent[] 
[2515]
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 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted
 if necessary:[] 
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 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 
1:6, dimnames = dn)[] 
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 []\T1/pcr/m/n/9 ## pointers example in converting from other sparse matrix rep
resentations.[] 
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 []   \T1/pcr/m/n/9 nzchar(dfil <- system.file("extdata", "rua_32_ax.rua", pack
age = "SparseM"))) {[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12426--12426
 []  \T1/pcr/m/n/9 XX <- sparseMatrix(j = X@ja, p = X@ia - 1L, x = X@ra, dims =
 X@dimension)[] 
[2516]
Underfull \hbox (badness 6842) in paragraph at lines 12516--12519
[]\T1/pcr/m/n/10 (x = "sparseMatrix", logarithm=TRUE)[]\T1/ptm/m/n/10 : [][][]\
T1/pcr/m/n/10 determinant[][][]() []\T1/ptm/m/n/10 meth-ods
Underfull \hbox (badness 10000) in paragraph at lines 12551--12555
[][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/10 , and its ref-er-ences,
 such as [][][]\T1/pcr/m/n/10 xtabs[][][](*, sparse=TRUE)[]\T1/ptm/m/n/10 , or
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[2518]
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[]\T1/pcr/m/n/10 signature(from = "sparseQR", logarithm = "logical")[]\T1/ptm/m
/n/10 : com-
[2519]
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[]\T1/ptm/m/n/10 The many aux-il-iary func-tions for QR fac-tor-iza-tions: [][]
[]\T1/pcr/m/n/10 qr.Q[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.R[][][][]
\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.X[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 qr.coef[][][][]\T1/ptm/m/n/10 ,
[2520]
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 12861--12861
 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(m, m), Dimnames = c(dn[1L
], list(NULL)),[] 
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2521]
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 []    \T1/pcr/m/n/9 ae2(qrc <- qr.coef  (qr.A, b), with(e.qr.A, solve(R1 %*% P
2., t(qrQ)) %*% b))[] 
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[]\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case
 a
[2522]
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[]\T1/ptm/m/n/10 Sparse Vec-tor Classes: The vir-tual mother class []\T1/pcr/m/
n/10 "sparseVector" []\T1/ptm/m/n/10 has the five ac-
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\T1/ptm/m/n/10 tual daugh-ter classes []\T1/pcr/m/n/10 "dsparseVector"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "isparseVector"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "
lsparseVector"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m/
n/10 co-erces sparse
[2523]
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[]\T1/pcr/m/n/10 (x = "nsparseVector")[]\T1/ptm/m/n/10 : re-turn [][][]\T1/pcr/
m/n/10 logical[][][] []\T1/ptm/m/n/10 or
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[][][]\T1/pcr/m/n/10 sparseVector[][][]() []\T1/ptm/m/n/10 for friendly con-str
uc-tion of sparse vec-tors (apart from []\T1/pcr/m/n/10 as(*,
[2524]
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[2525]
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 []\T1/pcr/m/n/10 spMatrix(nrow, ncol, i = integer(0L), j = integer(0L), x = do
uble(0L)) 
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[][][]\T1/pcr/m/n/10 Matrix[][][](*, sparse=TRUE) []\T1/ptm/m/n/10 for the more
 usual con-struc-tor of such ma-tri-ces. Then,
[2526]
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}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.13311 ...\Rdash{}}{subassign-methods}{[<.Rdash.}
                                                  
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[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2527]
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een already used, duplicate ignored
<to be read again> 
                   \relax 
l.13445 \aliasA{[}{subscript-methods}{[}
                                        
[2528]
Underfull \hbox (badness 2591) in paragraph at lines 13580--13585
\T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 triangularMatrix[][][][]\T1/ptm/m/n
/10 , and, e.g., [][][]\T1/pcr/m/n/10 dsyMatrix[][][] []\T1/ptm/m/n/10 for nu-m
eric \T1/ptm/m/it/10 dense \T1/ptm/m/n/10 ma-tri-ces, or
[2529]
Underfull \hbox (badness 2057) in paragraph at lines 13656--13658
[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
Underfull \hbox (badness 6396) in paragraph at lines 13665--13669
[]\T1/pcr/m/n/10 symmpart(x) []\T1/ptm/m/n/10 re-turns a sym-met-ric ma-trix, i
n-her-it-ing from [][][]\T1/pcr/m/n/10 symmetricMatrix[][][] []\T1/ptm/m/n/10 o
r
[2530]
Underfull \hbox (badness 7722) in paragraph at lines 13670--13675
[]\T1/pcr/m/n/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-trix
, in-her-it-ing from [][][]\T1/pcr/m/n/10 generalMatrix[][][][]\T1/ptm/m/n/10 ,
[2531]
Underfull \hbox (badness 6641) in paragraph at lines 13747--13750
[]\T1/ptm/m/n/10 Currently, [][][]\T1/pcr/m/n/10 Schur[][][][]\T1/ptm/m/n/10 , 
[][][]\T1/pcr/m/n/10 isSymmetric[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 as
() []\T1/ptm/m/n/10 (i.e. [][][]\T1/pcr/m/n/10 coerce[][][][]\T1/ptm/m/n/10 ) h
ave meth-ods with
Underfull \hbox (badness 5133) in paragraph at lines 13783--13787
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 "TsparseMatrix" []\T1/ptm/m/n/10 class is
 the vir-tual class of all sparse ma-tri-ces coded in
Underfull \hbox (badness 2818) in paragraph at lines 13783--13787
\T1/ptm/m/n/10 triplet form. Since it is a vir-tual class, no ob-jects may be c
re-ated from it. See
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[2533]
Underfull \hbox (badness 1668) in paragraph at lines 13910--13913
[][][]\T1/pcr/m/n/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 unpac
k[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/pcr/m/n/10 "[][]pac
kedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes
[2534]
Underfull \hbox (badness 10000) in paragraph at lines 14021--14027
[]\T1/ptm/m/n/10 GAL lat-tice file `\T1/pcr/m/n/10 usc_q.GAL\T1/ptm/m/n/10 ' (r
e-trieved in 2008 from
[2535]
[2536]
[2537]) (./boot-pkg.tex
[2538]
Chapter 18.
[2539]
[2540]
[2541]
[2542]
[2543]
[2544]
[2545]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 532--532
 []\T1/pcr/m/n/10 boot(data, statistic, R, sim = "ordinary", stype = c("i", "f"
, "w"), 
[2546]
Underfull \hbox (badness 1325) in paragraph at lines 570--577
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sim-u-la-tion r
e-quired. Pos-si-ble
Underfull \hbox (badness 1275) in paragraph at lines 585--590
[]\T1/ptm/m/n/10 An in-te-ger vec-tor or fac-tor spec-i-fy-ing the strata for m
ulti-sample prob-
[2547]
[2548]
[2549]
Underfull \hbox (badness 1881) in paragraph at lines 826--828
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 6493) in paragraph at lines 853--857
[][][]\T1/pcr/m/n/10 boot.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bo
ot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 censboot[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 empinf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 j
ack.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 tilt.boot[][][][]\T
1/ptm/m/n/10 ,
[2550]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 887--887
 []\T1/pcr/m/n/9 nuke.lm <- glm(log(cost) ~ date+log(cap)+ne+ct+log(cum.n)+pt, 
data = nuke)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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[2552]
[2553]
Underfull \hbox (badness 1496) in paragraph at lines 1084--1093
[]\T1/ptm/m/n/10 If sup-plied, a value to be used as an es-ti-mate of the vari-
ance of the
Underfull \hbox (badness 2005) in paragraph at lines 1084--1093
\T1/ptm/m/n/10 statis-tic for the nor-mal ap-prox-i-ma-tion and stu-den-tized i
n-ter-vals. If it
Underfull \hbox (badness 2343) in paragraph at lines 1084--1093
\T1/ptm/m/n/10 is not sup-plied and []\T1/pcr/m/n/10 length(index) []\T1/ptm/m/
n/10 is 2 then []\T1/pcr/m/n/10 var.t0 []\T1/ptm/m/n/10 de-faults to
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[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
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[2555]
[2556]
[2557]
Underfull \hbox (badness 1571) in paragraph at lines 1445--1447
[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2558]
[2559]
[2560]
[2561]
[2562]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1738--1738
 []\T1/pcr/m/n/10 censboot(data, statistic, R, F.surv, G.surv, strata = matrix(
1,n,2), 
[2563]
[2564]
[2565]
Underfull \vbox (badness 10000) has occurred while \output is active
[2566]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 2013--2013
 []\T1/pcr/m/n/9 mel.cox <- coxph(Surv(time, status == 1) ~ ns(thickness, df=4)
 + strata(ulcer),[] 
[2567]
Underfull \hbox (badness 6268) in paragraph at lines 2084--2086
[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2568]
[2569]
[2570]
Underfull \hbox (badness 1565) in paragraph at lines 2338--2343
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2571]
Underfull \hbox (badness 4595) in paragraph at lines 2363--2368
\T1/ptm/m/n/10 are passed un-changed ev-ery time []\T1/pcr/m/n/10 boot.out$stat
istic []\T1/ptm/m/n/10 is called.
Underfull \hbox (badness 1881) in paragraph at lines 2432--2434
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 2057) in paragraph at lines 2440--2441
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 empinf[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 k3.linear[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 linear.approx[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
saddle.distn[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.spline[][][][]
\T1/ptm/m/n/10 ,
[2572]
[2573]
Underfull \hbox (badness 1077) in paragraph at lines 2536--2540
[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/pcr/m
/n/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 n []\T1/ptm/m/n/1
0 is the sam-ple
Underfull \hbox (badness 1112) in paragraph at lines 2536--2540
\T1/ptm/m/n/10 size, if []\T1/pcr/m/n/10 unbiased []\T1/ptm/m/n/10 is []\T1/pcr
/m/n/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/pcr/m/n/10 1/n []\T
1/ptm/m/n/10 is used. This is mul-ti-plied by
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[2575]
[2576]
[2577]
[2578]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2895--2895
 []\T1/pcr/m/n/10 EEF.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t 
= 25, 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 2897--2897
 []\T1/pcr/m/n/10 EL.profile(y, tmin  =  min(y) + 0.1, tmax = max(y) - 0.1, n.t
  =  25,[] 
[2579]
[2580]
[2581]
Underfull \hbox (badness 3861) in paragraph at lines 3105--3108
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.arr
ay[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.ci[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 control[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 jack
.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 linear.approx[][][][]\
T1/ptm/m/n/10 ,
[2582]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 3158--3158
 []\T1/pcr/m/n/10 envelope(boot.out = NULL, mat = NULL, level = 0.95, index = 1
:ncol(mat)) 
[2583]
[2584]
[2585]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3378--3378
 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
[2586]
[2587]
[2588]
[2589]
[2590]
[2591]
[2592]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3838--3838
 []             \T1/pcr/m/n/10 t = boot.out$t[, index], w = NULL, def = TRUE, q
 = NULL)[] 
[2593]
[2594]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3977--3977
 []\T1/pcr/m/n/9 grav.p <- imp.prob(grav.tilt.boot, w = grav.w, index = 3, t0 =
 grav.z0[3])[] 
[2595]
[2596]
[2597]
[2598]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4259--4259
 []\T1/pcr/m/n/9 #  To draw the jackknife-after-bootstrap plot for the head siz
e data as in 
[2599]
[2600]
Underfull \hbox (badness 10000) in paragraph at lines 4362--4364
[]\T1/ptm/m/n/10 The in-dex of the vari-able of in-ter-est within the out-put o
f
Underfull \hbox (badness 1430) in paragraph at lines 4371--4375
\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is sup-plied but nei-the
r []\T1/pcr/m/n/10 t []\T1/ptm/m/n/10 nor []\T1/pcr/m/n/10 L []\T1/ptm/m/n/10 a
re sup-plied then []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is set to
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[2602]
[2603]
[2604]
[2605]
[2606]
[2607]
[2608]
[2609]
Underfull \hbox (badness 3000) in paragraph at lines 4959--4962
[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2610]
[2611]
[2612]
[2613]
Underfull \hbox (badness 2293) in paragraph at lines 5238--5241
[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
Underfull \hbox (badness 1668) in paragraph at lines 5238--5241
\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2614]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5317--5317
 []\T1/pcr/m/n/9 grav.boot <- boot(grav1, grav.fun, R = 499, stype = "w", strat
a = grav1[, 2])[] 
[2615]
[2616]
[2617]
[2618]
[2619]
[2620]
[2621]
[2622]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5866--5866
 []\T1/pcr/m/n/9 city.sp1$spa[1] <- jacobian(city, 1.25, city.sp1$zeta.hat) * c
ity.sp1$spa[1][] 
[2623]
Underfull \hbox (badness 1127) in paragraph at lines 5988--6006
[]\T1/ptm/m/n/10 etc. un-til a point is found with a cdf ap-prox-i-ma-tion less
 than []\T1/pcr/m/n/10 min(alpha)/10[]\T1/ptm/m/n/10 , then
[2624]
Underfull \hbox (badness 2837) in paragraph at lines 6021--6024
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/pcr/m/n/10 "s
addle.distn"[]\T1/ptm/m/n/10 . See the help file for
[2625]
[2626]
[2627]
[2628]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6306--6306
 []\T1/pcr/m/n/9 # This example is taken from Exercise 7.5 of Gill, Murray and 
Wright (1991). 
[2629]
[2630]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6495--6495
 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6497--6497
 []\T1/pcr/m/n/9 # value of the test statistic 1.84.  In the book exponential t
ilting was used[] 
[2631]
[2632]
[2633]
Underfull \hbox (badness 1596) in paragraph at lines 6742--6746
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2634]
[2635]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6902--6902
 []                        \T1/pcr/m/n/9 stype = "i", sim = "balanced", alpha =
 c(0.05, 0.95),[] 
[2636]
[2637]
[2638]
[2639]
[2640]
[2641]
[2642]
[2643]) (./class-pkg.tex
[2644]
Chapter 19.
[2645]
[2646]
[2647]
[2648]
[2649]
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[2653]
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Overfull \hbox (42.18039pt too wide) in paragraph at lines 1006--1006
 []    \T1/pcr/m/n/9 alpha = list(seq(0.05, 0, length.out = 1e4), seq(0.02, 0, 
length.out = 1e5)),[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1007--1007
 []    \T1/pcr/m/n/9 radii = list(seq(8, 1, length.out = 1e4), seq(4, 1, length
.out = 1e5)))[] 
[2659]
[2660]) (./cluster-pkg.tex
Chapter 20.
[2661]
[2662]
[2663]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 253--253
 []  \T1/pcr/m/n/9 all.equal(a.wgt [iC], agnes(d.vr, method="flexible", par.met
hod = 0.5)[iC])   ,[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 254--254
 []  \T1/pcr/m/n/9 all.equal(a.sing[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, -.5))[iC]),[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 255--255
 []  \T1/pcr/m/n/9 all.equal(a.comp[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, +.5))[iC]))[] 
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[2665]
[2666] [2667]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 519--519
 []           \T1/pcr/m/n/10 col = c(2, 0), border = 0, axes = TRUE, frame.plot
 = axes,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 523--523
 []           \T1/pcr/m/n/10 yaxRight = fromLeft, y.mar = 2.4 + max.strlen/2.5,
 ...)[] 
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[2669]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 638--638
 []      \T1/pcr/m/n/10 keep.data = medoids.x, rngR = FALSE, pamLike = FALSE, c
orrect.d = TRUE)[] 
[2670]
[2671]
[2672]
Underfull \hbox (badness 2941) in paragraph at lines 792--795
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 clara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\
T1/ptm/m/n/10 ,
[2673]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 835--835
 []\T1/pcr/m/n/9 ## those that are not always in same cluster (5 out of 3000 fo
r this seed):[] 
Underfull \hbox (badness 10000) in paragraph at lines 882--884
[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2674]
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 []     \T1/pcr/m/n/10 arrowArgs = list(col="red3", length=1/16, angle=90, code
=3), ...)[] 
[2675]
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[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
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[]\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in
 2012,
[2676]
Underfull \hbox (badness 2503) in paragraph at lines 1092--1096
[]\T1/ptm/m/n/10 Per Broberg (2006). SAGx: Sta-tis-ti-cal Anal-y-sis of the Gen
eChip. R pack-age ver-
[2677]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1118--1118
 []        \T1/pcr/m/n/9 sapply(mets, function(M) maxSE(fk, sk, method = M, SE.
factor = SEf)))[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 1135--1135
 []\T1/pcr/m/n/9 ## You can manually set it before running this :    doExtras <
- TRUE  # or  FALSE[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2678]
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 []\T1/pcr/m/n/9 plot(gsP.Z, main = "clusGap(<iid_rnorm_p=3>)  ==> k = 1  clust
er is optimal")[] 
Underfull \hbox (badness 4144) in paragraph at lines 1205--1209
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 nor a []\T1/pcr/m/n/10 data []\T1/ptm/m/n/10 
com-po-nent, e.g., for
[2679]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 1281--1281
 []          \T1/pcr/m/n/10 col.clus = if(color) c(2, 4, 6, 3) else 5, cex = 1,
 cex.txt = cex,[] 
Overfull \hbox (72.78088pt too wide) in paragraph at lines 1287--1287
 []             \T1/pcr/m/n/10 round(100 * var.dec, digits = 2), "% of the poin
t variability."),[] 
[2680]
[2681]
[2682]
Underfull \hbox (badness 10000) in paragraph at lines 1474--1477
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[][][]\T1/pcr/m/n/10 princomp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cmds
cale[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 daisy[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cov.mve[][][
][]\T1/ptm/m/n/10 ,
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1512--1512
 []\T1/pcr/m/n/9 clusplot(pamv, col.p = votes.clus, labels = 4)# color points a
nd label ellipses[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1522--1522
 []  \T1/pcr/m/n/9 clusplot(votes.diss, votes.clus, diss = TRUE, labels = 5)# i
dent. only points[] 
[2683]
Underfull \hbox (badness 5741) in paragraph at lines 1562--1565
[]\T1/pcr/m/n/10 coefHier() []\T1/ptm/m/n/10 di-rectly in-ter-faces to the un-d
er-ly-ing C code, and ``proves'' that \T1/ptm/m/it/10 only
[2684]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1631--1631
 []      \T1/pcr/m/n/10 warnBin = warnType, warnAsym = warnType, warnConst = wa
rnType,[] 
[2685]
Underfull \hbox (badness 1552) in paragraph at lines 1680--1682
[]\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/pcr/m/n
/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , se
e
Underfull \hbox (badness 1629) in paragraph at lines 1694--1698
[]\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault 
\T1/ptm/m/n/10 for all nu-meric
Underfull \hbox (badness 3746) in paragraph at lines 1694--1698
\T1/ptm/m/n/10 (incl []\T1/pcr/m/n/10 integer[]\T1/ptm/m/n/10 ) columns of []\T
1/pcr/m/n/10 x[]\T1/ptm/m/n/10 , aka []\T1/pcr/m/n/10 "I" []\T1/ptm/m/n/10 in r
e-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , see
[2686]
Underfull \hbox (badness 1540) in paragraph at lines 1769--1777
\T1/ptm/m/n/10 In other words, $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 is a weigh
ted mean of $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 with weights $\OML/cmm/m/it/1
0 w[]^^N[]$\T1/ptm/m/n/10 , where $\OML/cmm/m/it/10 w[]$[]\T1/pcr/m/n/10 =
[2687]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1856--1856
 []\T1/pcr/m/n/9 ## Example 2 in reference, extended  ---  different ways of "m
ixed" / "gower":[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 1860--1860
 []\T1/pcr/m/n/9 summary(d0    <- daisy(flower))  # -> the first 3 {0,1} treate
d as *N*ominal[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 1861--1861
 []\T1/pcr/m/n/9 summary(dS123 <- daisy(flower,  type = list(symm = 1:3))) # fi
rst 3 treated as *S*ymmetric[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1862--1862
 []\T1/pcr/m/n/9 stopifnot(dS123 == d0) # i.e.,  *S*ymmetric <==> *N*ominal {fo
r 2-level factor}[] 
Overfull \hbox (106.98032pt too wide) in paragraph at lines 1866--1866
 []\T1/pcr/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated *
A*symmetric binary (w/ warning)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1868--1868
 []\T1/pcr/m/n/9 summary(dA13 <- daisy(flower, type = list(asymm = c(1, 3), ord
ratio = 7)))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1876--1876
 []\T1/pcr/m/n/9 summary(dN <- daisy(Nflow)) # w/ warning: treated binary .. 1:
3 as interval[] 
Overfull \hbox (117.7803pt too wide) in paragraph at lines 1877--1877
 []\T1/pcr/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id
entical to treating them as "N" :[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 1893--1893
 []\T1/pcr/m/n/10 diana(x, diss = inherits(x, "dist"), metric = "euclidean", st
and = FALSE, 
[2688]
[2689]
[2690]
[2691]
[2692]
Underfull \hbox (badness 10000) in paragraph at lines 2212--2215
Underfull \hbox (badness 3179) in paragraph at lines 2223--2229
[][][]\T1/pcr/m/n/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also the
 [][][]\T1/pcr/m/n/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/pcr/m/n/1
0 ellipsoid []\T1/ptm/m/n/10 ob-jects.
[2693]
[2694]
Underfull \hbox (badness 10000) in paragraph at lines 2380--2383
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 fanny.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2695]
Underfull \hbox (badness 1292) in paragraph at lines 2448--2451
[]\T1/ptm/m/n/10 named vec-tor with []\T1/pcr/m/n/10 iterations[]\T1/ptm/m/n/10
 , the num-ber of it-er-a-tions needed and
[2696]
Underfull \hbox (badness 6675) in paragraph at lines 2457--2459
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
Underfull \hbox (badness 10000) in paragraph at lines 2480--2483
[][][]\T1/pcr/m/n/10 fanny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.f
anny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dissimilarity.object[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2697]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2555--2555
 []                           \T1/pcr/m/n/9 "4" = "red", "5" = "blue")[levels(f
lowerN$color)][] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 2556--2556
 []\T1/pcr/m/n/9 levels(flowerN$soil)  <- c("1" = "dry", "2" = "normal", "3" = 
"wet")[levels(flowerN$soil)][] 
[2698]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 2619--2619
 []\T1/pcr/m/n/10 medoids(x, clustering, diss = inherits(x, "dist"), USE.NAMES 
= FALSE, ...) 
[2699]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 2666--2666
 []  \T1/pcr/m/n/9 stopifnot(length(cl.k) == nrow(votes.repub), 1 <= cl.k, cl.k
 <= k, table(cl.k) >= 2)[] 
[2700]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2771--2771
 []\T1/pcr/m/n/9 ## One place to see if/how error messages are *translated* (to
 \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 de\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 / \TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 pl\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ):[] 
[2701]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 2850--2850
 []    \T1/pcr/m/n/10 variant = c("original", "o_1", "o_2", "f_3", "f_4", "f_5"
, "faster"),[] 
[2702]
[2703]
[2704]
[2705]
Overfull \hbox (85.38034pt too wide) in paragraph at lines 3078--3078
 []\T1/pcr/m/n/9 ## use obs. 1 & 16 as starting medoids -- same result (for see
d above, *and* typically) :[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3080--3080
 []\T1/pcr/m/n/9 ## no _build_ *and* no _swap_ phase: just cluster all obs. aro
und (1, 16):[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 3083--3083
 []\T1/pcr/m/n/9 keep_nms <- setdiff(names(pamx), c("call", "objective"))# .$ob
jective["build"] differ[] 
[2706]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3187--3187
 []\T1/pcr/m/n/9 axis(1, k.best, paste("best",k.best,sep="\n"), col = "red", co
l.axis = "red")[] 
[2707]
[2708]
[2709]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 3381--3381
 []           \T1/pcr/m/n/10 sub = paste("Agglomerative Coefficient = ",round(x
$ac, digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3382--3382
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2710]
Underfull \hbox (badness 10000) in paragraph at lines 3449--3452
[]\T1/ptm/m/n/10 For the den-dro-gram, more flex-i-bil-ity than via []\T1/pcr/m
/n/10 pltree() []\T1/ptm/m/n/10 is pro-vided by []\T1/pcr/m/n/10 dg <-
[2711]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 3499--3499
 []           \T1/pcr/m/n/10 sub = paste("Divisive Coefficient = ", round(x$dc,
 digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3500--3500
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2712]
[2713]
[2714]
Underfull \hbox (badness 10000) in paragraph at lines 3685--3688
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 com-po-nent as for [][][]\T1/pcr/m/n/10 pam[]
[][](*,
Underfull \hbox (badness 1448) in paragraph at lines 3685--3688
\T1/pcr/m/n/10 keep.diss=FALSE)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dist []\T1/p
tm/m/n/10 must be the dis-sim-i-lar-ity if a clus-plot is
[2715]
Underfull \hbox (badness 10000) in paragraph at lines 3748--3753
[][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 clusplot.de
fault[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 ,
[2716]
Underfull \hbox (badness 1748) in paragraph at lines 3810--3815
\T1/ptm/m/n/10 dis-patches to [][][]\T1/pcr/m/n/10 plot.hclust[][][](..)[]\T1/p
tm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/pcr/m/n/10 xx 
<-
Underfull \hbox (badness 6268) in paragraph at lines 3822--3825
[][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 agnes.o
bject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 diana.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/1
0 hclust[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 plot.agnes[][][][]\T1/ptm/m/n/10 ,
[2717]
Underfull \hbox (badness 10000) in paragraph at lines 3883--3885
[]\T1/ptm/m/n/10 Available as `\T1/pcr/m/n/10 pluton.dat\T1/ptm/m/n/10 ' from t
he archive of the Uni-ver-sity of Antwer-pen,
[2718]
[2719]
Underfull \hbox (badness 10000) in paragraph at lines 4002--4005
[][][]\T1/pcr/m/n/10 summary.agnes[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ag
nes.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
[2720]
Underfull \hbox (badness 10000) in paragraph at lines 4033--4036
[][][]\T1/pcr/m/n/10 summary.clara[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cl
ara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
[2721]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 4086--4086
 []      \T1/pcr/m/n/10 digits = getOption("digits"), justify = "none", right =
 TRUE, ...)[] 
Underfull \hbox (badness 2035) in paragraph at lines 4097--4099
[]\T1/ptm/m/n/10 a []\T1/pcr/m/n/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a
 []\T1/pcr/m/n/10 summary.dissimilarity []\T1/ptm/m/n/10 one for
[2722]
[2723]
[2724]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 4290--4290
 []     \T1/pcr/m/n/10 main = NULL, sub = NULL, xlab = expression("Silhouette w
idth "* s[i]),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 4292--4292
 []     \T1/pcr/m/n/10 cex.names = par("cex.axis"), do.n.k = TRUE, do.clus.stat
 = TRUE, ...)[] 
[2725]
[2726]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 4434--4434
 []\T1/pcr/m/n/9 plot(si, col = c("red", "green", "blue", "purple"))# with clus
ter-wise coloring[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4443--4443
 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4445--4445
 []      \T1/pcr/m/n/9 outer = TRUE, font = par("font.main"), cex = par("cex.ma
in")); frame()[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 4448--4448
 []\T1/pcr/m/n/9 c6 <- c("tomato", "forest green", "dark blue", "purple2", "gol
denrod4", "gray20")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4450--4450
 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE,[] 
[2727]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 4457--4457
 []\T1/pcr/m/n/9 str(xc1k <- xclara[ sample(nrow(xclara), size = 1000) ,]) # ro
wnames == indices[] 
[2728]
[2729]
[2730]
[2731]
[2732]
[2733]
Underfull \hbox (badness 10000) in paragraph at lines 4828--4834
[]\T1/ptm/m/n/10 Our ver-sion of the []\T1/pcr/m/n/10 xclara []\T1/ptm/m/n/10 i
s slightly more rounded than the one from
Underfull \hbox (badness 10000) in paragraph at lines 4844--4846
[]\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file 
`\T1/pcr/m/n/10 xclara.dat\T1/ptm/m/n/10 ' in side
Overfull \hbox (52.98038pt too wide) in paragraph at lines 4857--4857
 []\T1/pcr/m/n/9 ## Visualization: Assuming groups are defined as {1:1000}, {10
01:2000}, {2001:3000} 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 4859--4859
 []\T1/pcr/m/n/9 p.ID <- c(78, 1411, 2535) ## PAM\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 
s medoid indices  == pam(xclara, 3)$id.med[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4869--4869
 [] \T1/pcr/m/n/9 ## We see 3 + 2 + 2 = 7  clear "outlier"s  or "wrong group" o
bservations:[] 
[2734]
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 [] \T1/pcr/m/n/9 ## Apart from these, what are the robust ranges of indices? -
- Robust range:[] 
[2735]) (./codetools-pkg.tex
[2736]
Chapter 21.
Overfull \hbox (24.78088pt too wide) in paragraph at lines 16--16
 []           \T1/pcr/m/n/10 suppressParamUnused = !all, suppressFundefMismatch
 = FALSE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 17--17
 []           \T1/pcr/m/n/10 suppressLocalUnused = FALSE, suppressNoLocalFun = 
!all,[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 18--18
 []           \T1/pcr/m/n/10 skipWith = FALSE, suppressUndefined = dfltSuppress
Undefined,[] 
[2737]
Underfull \hbox (badness 10000) in paragraph at lines 65--70
[]\T1/pcr/m/n/10 checkUsageEnv []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 checkUsage
Package []\T1/ptm/m/n/10 are con-ve-nience func-tions that ap-ply
[2738]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 118--118
 []\T1/pcr/m/n/10 makeConstantFolder(..., leaf, handler, call, exit, isLocal, f
oldable,[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 121--121
 []\T1/pcr/m/n/10 makeUsageCollector(fun, ..., name, enterLocal, enterGlobal, e
nterInternal,[] 
[2739]
[2740]
[2741]) (./foreign-pkg.tex
[2742]
Chapter 22.
Underfull \hbox (badness 10000) in paragraph at lines 33--37
[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
Underfull \hbox (badness 10000) in paragraph at lines 33--37
\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][]$\T1/p
cr/m/n/10 https : / / support .
Underfull \hbox (badness 10000) in paragraph at lines 33--37
\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
Overfull \hbox (74.28088pt too wide) in paragraph at lines 33--37
\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2743]
Underfull \hbox (badness 1231) in paragraph at lines 67--70
[]\T1/ptm/m/n/10 a char-ac-ter string with the name of the ARFF file to read fr
om, or a
[2744]
[2745]
Underfull \hbox (badness 3601) in paragraph at lines 234--242
[]\T1/ptm/m/n/10 A data frame with at-tributes. These will in-clude []\T1/pcr/m
/n/10 "datalabel"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "time.stamp"[]\T1/ptm/m/n/
10 ,
[2746]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 292--292
 []\T1/pcr/m/n/10 read.epiinfo(file, read.deleted = FALSE, guess.broken.dates =
 FALSE, 
[2747]
[2748]
[2749]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 458--458
 []          \T1/pcr/m/n/10 trim_values = TRUE, reencode = NA, use.missings = t
o.data.frame,[] 
[2750]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 459--459
 []          \T1/pcr/m/n/10 sub = ".", add.undeclared.levels = c("sort", "appen
d", "no"),[] 
Underfull \hbox (badness 2846) in paragraph at lines 502--511
[]\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif-
fer-ent lev-
Underfull \hbox (badness 3746) in paragraph at lines 502--511
\T1/ptm/m/n/10 els. For []\T1/pcr/m/n/10 "append" []\T1/ptm/m/n/10 (the de-faul
t), the first orig-i-nal value la-bel is
Underfull \hbox (badness 2269) in paragraph at lines 502--511
\T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/p
cr/m/n/10 paste0(label,
Underfull \hbox (badness 10000) in paragraph at lines 512--515
[]\T1/ptm/m/n/10 character: the in-fix used for la-bels of fac-tor lev-els with
 du-
Underfull \hbox (badness 10000) in paragraph at lines 512--515
\T1/ptm/m/n/10 pli-cated value la-bels in SPSS (de-fault []\T1/pcr/m/n/10 "_dup
licated_"[]\T1/ptm/m/n/10 ) if
[2751]
Underfull \hbox (badness 10000) in paragraph at lines 546--554
[]\T1/ptm/m/n/10 URL [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / 
en-[]us / windows / win32 / intl /
Underfull \hbox (badness 7613) in paragraph at lines 564--570
[]\T1/ptm/m/n/10 There may be at-tributes []\T1/pcr/m/n/10 "label.table" []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 "variable.labels"[]\T1/ptm/m/n/10 . At-tribute
[2752]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 619--619
 []\T1/pcr/m/n/9 ### hence may need some special treatment with appropriate arg
ument settings.[] 
Overfull \hbox (112.38031pt too wide) in paragraph at lines 620--620
 []\T1/pcr/m/n/9 ### Expect lots of warnings as value labels (corresponding to 
R factor labels) are uncomplete,[] 
[2753]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 653--653
 []\T1/pcr/m/n/9 ## Long Strings (>255 chars) are imported in consecutive separ
ate variables[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 657--657
 []\T1/pcr/m/n/9 cat.long.string <- function(x, w=70) cat(paste(strwrap(x, widt
h=w), "\n"))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 664--664
 []\T1/pcr/m/n/9 long.string <- apply(x[,c("string_500", "STRIN0")], 1, paste, 
collapse="")[] 
[2754]
[2755]
Underfull \hbox (badness 10000) in paragraph at lines 808--809
Overfull \hbox (4.38043pt too wide) in paragraph at lines 818--818
 []\T1/pcr/m/n/9 iris.s <- read.systat(system.file("files/Iris.syd", package="f
oreign")[1])[] 
[2756]
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[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
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\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][]$\T1/p
cr/m/n/10 https : / / support .
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\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
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\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2757]
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 []  \T1/pcr/m/n/10 data.restore(file, print = FALSE, verbose = FALSE, env = .G
lobalEnv) 
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 []\T1/pcr/m/n/10 write.arff(x, file, eol = "\n", relation = deparse(substitute
(x))) 
[2759]
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[][][]$\T1/pcr/m/n/10 https : / / www . clicketyclick . dk / databases / xbase 
/ format / data _ types .
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 []          \T1/pcr/m/n/10 convert.factors = c("labels", "string", "numeric", 
"codes"))[] 
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[]\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/pcr/m/n/10 foreig
n:::writeForeignStata[]\T1/ptm/m/n/10 ,
[2763]
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 package="SPSS"[]\T1/ptm/m/n/10 , as a sid
e ef-fect, the dec-i-mal in-di-ca-tor is al-ways set by []\T1/pcr/m/n/10 SET
[2764]) (./lattice-pkg.tex
Chapter 23.
[2765]
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\T1/ptm/m/n/10 pro-vide a holis-tic in-tro-duc-tion to the Trel-lis paradigm: [
][]$\T1/pcr/m/n/10 http : / / web . archive . org /
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\T1/pcr/m/n/10 web / 20081020164041 / http : / / cm . bell-[]labs . com / cm / 
ms / departments / sia /
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[2767]
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 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
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 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.xyplot"),[] 
[2768]
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 []        \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defaul
t.dotplot"),[] 
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 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.barchart"),[] 
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 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.stripplot"),[] 
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 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
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[2769]
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 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.bwplot"),[] 
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[]\T1/ptm/m/n/10 A log-i-cal, or a list con-tain-ing com-po-nents to be used as
 ar-gu-ments to
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[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the un-used lev-els of 
fac-tors will be
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\T1/ptm/m/n/10 some-times ap-pro-pri-ate to sup-press drop-ping to pre-serve a 
use-ful lay-out.
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[]\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 sho
uld be num-bers be-tween 0 and 1, giv-ing co-or-di-nates
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[]\T1/ptm/m/n/10 Logical flag, whether leg-end should have a
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[]\T1/ptm/m/n/10 Space be-tween col-umn blocks, in ad-di-tion to
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[]\T1/ptm/m/n/10 A list con-tain-ing pos-si-ble ar-gu-ments to [][][]\T1/pcr/m/
n/10 plot.trellis[][][][]\T1/ptm/m/n/10 ,
[2783]
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[][][]\T1/pcr/m/n/10 panel.dotplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.superpose[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.loess[][][][]\T1/ptm/m/n/10 ,
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 []                  \T1/pcr/m/n/9 text = list(lab = as.character(unique(Orchar
dSprays$rowpos))),[] 
[2786]
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[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/pcr/m/n/10 xyplot[]
[][][]\T1/ptm/m/n/10 , which may pass them on to
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[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
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[]\T1/ptm/m/n/10 style set-tings be-yond the stan-dard []\T1/pcr/m/n/10 col[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1
/ptm/m/n/10 , etc; see
[2787]
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[]\T1/ptm/m/n/10 Gabor Grothendieck, Achim Zeileis, Deep-ayan Sarkar and Fe-lix
 An-drews
[2788]
[2789]
[2790]
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 []            \T1/pcr/m/n/10 auto.key = lattice.getOption("default.args")$auto
.key,[] 
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 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.densitypl
ot"),[] 
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[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fie
d, the value of
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[]\T1/pcr/m/n/10 lattice.getOption("histogram.breaks") []\T1/ptm/m/n/10 is firs
t checked. If
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 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
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 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.qqmath"),[] 
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 []          \T1/pcr/m/n/10 panel = if (useRaster) lattice.getOption("panel.lev
elplot.raster")[] 
[2800]
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ot"),[] 
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[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
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[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
[2802]
[2803]
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[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the col-orkey should be
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\T1/ptm/m/n/10 ren-dered as a raster im-age us-ing [][][]\T1/pcr/m/n/10 grid.ra
ster[][][][]\T1/ptm/m/n/10 . See also
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[]\T1/ptm/m/n/10 Logical flag, passed to [][][]\T1/pcr/m/n/10 rasterGrob[][][] 
[]\T1/ptm/m/n/10 when
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[]\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gr
oups[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether raster rep-re-sen-ta-ti
ons should be used,
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\T1/ptm/m/n/10 both for the false color im-age and the color key (if present). 
Ef-
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\T1/ptm/m/n/10 fec-tively, set-ting this to []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n
/10 changes the de-fault panel func-tion from
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[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2804]
[2805]
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 []      \T1/pcr/m/n/10 xlim = if (is.factor(x)) levels(x) else range(x, finite
 = TRUE),[] 
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 []      \T1/pcr/m/n/10 ylim = if (is.factor(y)) levels(y) else range(y, finite
 = TRUE),[] 
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 []      \T1/pcr/m/n/10 zlim = if (is.factor(z)) levels(z) else range(z, finite
 = TRUE),[] 
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 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
cloud"),[] 
[2806]
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 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.wireframe"),[] 
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[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
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[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
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[]\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepan
el[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 
groups[]\T1/ptm/m/n/10 ,
[2808]
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3506 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                
[2811]
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 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
splom"),[] 
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 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.parallel"),[] 
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 []\T1/pcr/m/n/10 oneway(formula, data, location=mean, spread=function(x) sqrt(
var(x))) 
[2817]
[2818]
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[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings by
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\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2819]
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 []               \T1/pcr/m/n/10 symbol = palette.colors(palette = "Okabe-Ito")
[c(6, 2, 4, 7, 3, 5, 8)],[] 
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 []               \T1/pcr/m/n/10 region = hcl.colors(14, palette = "YlGnBu", re
v = TRUE),[] 
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black",[] 
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 []             \T1/pcr/m/n/10 strip.bg = rep("gray95", 7), strip.fg = rep("gra
y70", 7),[] 
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 []\T1/pcr/m/n/10 trellis.par.set(name, value, ..., theme, warn = TRUE, strict 
= FALSE) 
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[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
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[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
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[]\T1/pcr/m/n/10 theme[]\T1/ptm/m/n/10 ). These are used to mod-ify the cur-ren
t set-tings (ob-tained by
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[]\T1/ptm/m/n/10 The ac-tual list of the com-po-nents in []\T1/pcr/m/n/10 trell
is.settings []\T1/ptm/m/n/10 has not been fi-nal-ized,
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\T1/ptm/m/n/10 so I'm not at-tempt-ing to list them here. The cur-rent value ca
n be ob-tained by
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[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/pcr/m/n/10 col []\T1/ptm/m/n/
10 is used for com-po-nents []\T1/pcr/m/n/10 "plot.symbol"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "plot.line"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "plot.polygon"[
]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "superpose.line"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "super
pose.polygon"[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 col.points
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[]\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , but is used 
only for []\T1/pcr/m/n/10 "plot.symbol" []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 . Sim-i-larly, []\T1/pcr/m/
n/10 col.line []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col []\T1/ptm/m/n/10
 for
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[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 pl
ot.symbol[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 plot.polygon[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 
plot.polygon []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 aspect[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 between[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 grid[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 skip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 p12 <- densityplot( ~ height | voice.part, data = singer, xlab
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[]\T1/pcr/m/n/10 main[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 page[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 par.strip.text[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 skip
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[]\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yscale.co
mponents[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 axis[]\T1/ptm/m/n/10 , []\T1/pcr/m/
n/10 par.settings[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 trellis[]\T1/ptm/m/n/10 ,
 by de-fault plot-ted by []\T1/pcr/m/n/10 print.trellis[]\T1/ptm/m/n/10 .
[2834]
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[]\T1/pcr/m/n/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gle
s via rect-an-gles. []\T1/pcr/m/n/10 print.shingle []\T1/ptm/m/n/10 and
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[][][]\T1/pcr/m/n/10 Lattice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 draw.
key[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 trellis.par.get[][][][]\T1/ptm
/m/n/10 , and [][][]\T1/pcr/m/n/10 xyplot[][][][]\T1/ptm/m/n/10 , specif-i-call
y the en-try for
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 []              \T1/pcr/m/n/10 bg = trellis.par.get("strip.background")$col[wh
ich.given],[] 
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 []              \T1/pcr/m/n/10 fg = trellis.par.get("strip.shingle")$col[which
.given],[] 
[2841]
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[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
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[]\T1/pcr/m/n/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on the
 left of pan-els us-ing
[2842]
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[]\T1/pcr/m/n/10 strip.default []\T1/ptm/m/n/10 is called for its side-effect, 
which is to draw a strip ap-pro-pri-ate for
[2843]
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 []\T1/pcr/m/n/10 panel.identify.qqmath(x, distribution, groups, subscripts, la
bels,[] 
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 []\T1/pcr/m/n/10 panel.link.splom(threshold = 18, verbose = getOption("verbose
"), ...)[] 
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 []\T1/pcr/m/n/10 panel.brush.splom(threshold = 18, verbose = getOption("verbos
e"), ...)[] 
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 []\T1/pcr/m/n/10 trellis.vpname(name = c("position", "split", "split.location"
, "toplevel",[] 
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 []                        \T1/pcr/m/n/10 "xlab", "ylab", "xlab.top", "ylab.rig
ht", "page"),[] 
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side"),[] 
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ch.given",[] 
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fix),[] 
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 []                 \T1/pcr/m/n/10 which.panel = lattice.getStatus("current.whi
ch.panel",[] 
[2845]
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fix),[] 
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 []                 \T1/pcr/m/n/10 column = lattice.getStatus("current.focus.co
lumn",[] 
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[]\T1/ptm/m/n/10 variables defin-ing the con-tents of the panel. In the case of
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[]\T1/ptm/m/n/10 an op-tional vec-tor of la-bels as-so-ci-ated with each point.
 De-faults to
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\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 trellis.focus[]\T1/ptm/m/n/10 , the de-faul
t is []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 in in-ter-ac-tive mode, and
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , e
x-tra pa-ram-e-ters are passed on to
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[]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 trellis.switchFocus[]\T1/ptm/m/n/10 , the
se are used (in com-bi-na-tion with
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[2848]
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[][][]\T1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Latt
ice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.trellis[][][][]\T1/ptm/m
/n/10 , [][][]\T1/pcr/m/n/10 trellis.currentLayout[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
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[2853]
Underfull \hbox (badness 3601) in paragraph at lines 6472--6477
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/pcr/m/n/10 x []\T1/ptm/m
/n/10 for ev-ery level of []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 (or the other way
 round
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\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 horizontal=FALSE[]\T1/ptm/m/n/10 ). By de-fa
ult, the ac-tual box-plot statis-tics are cal-cu-lated us-ing
[2854]
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 []             \T1/pcr/m/n/10 shade.colors.palette = trellis.par.get("shade.co
lors")$palette,[] 
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[]\T1/ptm/m/n/10 All three num-bers should be be-tween 0 and 1. The
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[]\T1/ptm/m/n/10 numeric, be-tween 0 and 1, giv-ing a min-i-mum sat-u-ra-tion i
n
[2858]
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 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Inferno"),[] 
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0, "Dark Mint"),[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6864--6864
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Harmonic"),[] 
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[]\T1/pcr/m/n/10 panel.levelplot.raster []\T1/ptm/m/n/10 is an al-ter-na-tive p
anel func-tion that uses the raster draw-
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\T1/ptm/m/n/10 can only ren-der data on an eq-ui-s-paced grid), but can be more
 ef-fi-cient. When us-ing
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 []                 \T1/pcr/m/n/10 varname = NULL, limits, at = NULL, labels = 
NULL,[] 
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[]\T1/ptm/m/n/10 The panel func-tion used for the di-ag-o-nals. See ar-gu-ments
 to
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[]\T1/pcr/m/n/10 diag.panel.splom []\T1/ptm/m/n/10 to know what ar-gu-ments thi
s func-tion is passed
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[2867]
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\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 diag.panel []\T1/ptm/m/n/10 from []\T1/pcr/
m/n/10 panel.pairs[]\T1/ptm/m/n/10 . Cur-rently ig-nored by
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 []              \T1/pcr/m/n/9 function(i,j) hcl.colors(11)[i+j-1]) ## rainbow(
11, start=.12, end=.5)[i+j-1])[] 
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[2869]
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[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
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 []                  \T1/pcr/m/n/9 panel.qqmath(..., f.value = ppoints(100), ta
ils.n = 50))[] 
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[]\T1/pcr/m/n/10 "lm" []\T1/ptm/m/n/10 adds a lin-ear re-gres-sion line (same a
s [][][]\T1/pcr/m/n/10 panel.lmline[][][][]\T1/ptm/m/n/10 , ex-cept
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\T1/ptm/m/n/10 for de-fault graph-i-cal pa-ram-e-ters). []\T1/pcr/m/n/10 "loess
" []\T1/ptm/m/n/10 adds a loess fit (same as
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[]\T1/ptm/m/n/10 Most gen-er-ally, []\T1/pcr/m/n/10 grid []\T1/ptm/m/n/10 can b
e a list of ar-gu-ments to be sup-plied to
[2874]
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 []       \T1/pcr/m/n/9 ylab = list(c("horizontal=TRUE", "horizontal=FALSE"), y
 = c(1/6, 4/6)),[] 
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 []       \T1/pcr/m/n/9 scales = list(alternating = c(0, 2), tck = c(0, 0.7), d
raw = FALSE),[] 
[2875]
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e.type)[] 
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ntifier, name.type)[] 
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[2876]
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[]\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 alpha[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1/ptm/m/n/10 , 
[]\T1/pcr/m/n/10 fill[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 , 
[]\T1/pcr/m/n/10 cex[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lineheight[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 font[]\T1/ptm/m/n/10 ,
[2877]
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 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.rect, col = 4, alpha = 0.5, wid
th = 0.1, height = 0.1)[] 
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 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.polygon, col = 4, alpha = 0.5, 
rule = "evenodd")[] 
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 []\T1/pcr/m/n/9 ## Example adapted from https://journal.r-project.org/articles
/RJ-2012-017/[] 
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 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polygon,  rule = "none",
 col = "grey")[] 
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 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polypath, rule = "windin
g", col = "grey")[] 
[2878]
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 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polypath, rule = "evenod
d", col = "grey")[] 
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 []\T1/pcr/m/n/10 panel.grid(h=3, v=3, col, col.line, lty, lwd, x, y, ..., iden
tifier = "grid")[] 
[2879]
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[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
[2880]
[2881]
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 []           \T1/pcr/m/n/9 panel.superpose(x, y, ..., panel.groups = panel.ave
rage, grid = FALSE,[] 
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 []                                \T1/pcr/m/n/9 args = list(mean = mean(x), sd
 = sd(x)), ...)[] 
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[2883]
[2884]
[2885]
[2886]
[2887]
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[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/pcr/m/n/10 panel.super
pose
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[]\T1/ptm/m/n/10 from []\T1/pcr/m/n/10 panel.superpose.2[]\T1/ptm/m/n/10 , and 
to []\T1/pcr/m/n/10 panel.groups []\T1/ptm/m/n/10 from
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[2889]
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 []\T1/pcr/m/n/10 prepanel.default.bwplot(x, y, horizontal, nlevels, origin, st
ack, ...)[] 
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 []\T1/pcr/m/n/10 prepanel.default.histogram(x, breaks, equal.widths, type, nin
t, ...)[] 
[2890]
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 []\T1/pcr/m/n/10 prepanel.default.densityplot(x, darg, groups, weights, subscr
ipts, ...)[] 
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[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/pcr/m/n/10 type [
]\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2891]
Underfull \hbox (badness 1515) in paragraph at lines 9160--9164
[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
[2892]
[2893]
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[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
[2894]
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 []                \T1/pcr/m/n/9 ans$bottom$labels$labels <- parse(text = ans$b
ottom$labels$labels)[] 
[2895]
[2896]
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 []\T1/pcr/m/n/9 xyplot(sunspot.year ~ time(sunspot.year) | equal.count(time(su
nspot.year)),[] 
[2897]
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\T1/pcr/m/n/10 condition []\T1/ptm/m/n/10 for 2-D, and []\T1/pcr/m/n/10 left, r
ight.x, right.y, left.name, right.x.name,
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[]\T1/ptm/m/n/10 Factor with lev-els []\T1/pcr/m/n/10 "Svansota"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Manchuria"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 475"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "Velvet"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Peatland"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Glabron"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 4
57"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Wisconsin No. 38"[]\T1/ptm/m/n/10 ,
[2905]
[2906]
[2907]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                
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[2909]
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\T1/pcr/m/n/10 diseases[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Diabetes[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 Flu and pneumonia[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 He
art disease[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Lower
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 []        \T1/pcr/m/n/9 par.settings = simpleTheme(pch = 16), auto.key = list(
columns = 2),[] 
[2911]
[2912]) (./mgcv-pkg.tex
Chapter 24.
[2913]
[2914]
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 []\T1/pcr/m/n/10 bam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL, 
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 []    \T1/pcr/m/n/10 paraPen=NULL,chunk.size=10000,rho=0,AR.start=NULL,discret
e=FALSE,[] 
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 []    \T1/pcr/m/n/10 coef=NULL,drop.unused.levels=TRUE,G=NULL,fit=TRUE,drop.in
tercept=NULL,[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
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[][][]\T1/pcr/m/n/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
[2920]
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 []\T1/pcr/m/n/9 system.time(b2 <- bam(y ~ s(x0,bs=bs,k=k)+s(x1,bs=bs,k=k)+s(x2
,bs=bs,k=k)+[] 
[2921]
[2922]
[2923]
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[]\T1/ptm/m/n/10 The link func-tion: one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cloglog" 
[]\T1/ptm/m/n/10 and
[2924]
[2925]
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[]\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t
ing en-vi-ron-ment vari-able
[2926]
[2927]
Underfull \hbox (badness 1158) in paragraph at lines 814--816
[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
[2928]
Underfull \hbox (badness 1259) in paragraph at lines 877--878
[]\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro
-duc-tion with R (2nd edi-tion).
[2929]
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h + 2*b$family$data$
q^.5),col=2)[] 
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h - 2*b$family$data$
q^.5),col=2)[] 
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 []    \T1/pcr/m/n/9 plot(b$y[oy],rs[oy,ii[1]],ylim=c(-3,3),type="l",ylab="scor
e residuals",[] 
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 []\T1/pcr/m/n/9 bs <- gam(cbind(time,strata)~s(age,by=sex)+sex+s(nodes)+perfor
+rx+obstruct[] 
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 []\T1/pcr/m/n/9 if (i==1) plot(bs$family$data$tr[ind],exp(-bs$family$data$h[in
d]),type="l",[] 
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 []      \T1/pcr/m/n/9 lines(bs$family$data$tr[ind],exp(-bs$family$data$h[ind])
,lwd=2,col=i)[] 
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[2938]
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 []\T1/pcr/m/n/9 b <- gam(t~s(x0)+s(x1)+s(x2,k=15)+s(x3),family=cox.ph,weights=
d,data=surv)[] 
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 []  \T1/pcr/m/n/9 if (inter) prg <- txtProgressBar(min = 0, max = length(sid),
 initial = 0,[] 
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 []    \T1/pcr/m/n/9 if (um[[et]][1]==max(tr)&&um[[status]][1]==1) um[[event]][
nrow(um)] <- 1[] 
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 []\T1/pcr/m/n/9 pd <- data.frame(lapply(X=di,FUN=app,t=di$day,to=te)) ## inter
polate to te[] 
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 []\T1/pcr/m/n/9 bd <- bam(y~s(x0)+ s(x1) + s(x1,fac,bs="sz",k=5)+s(x2,k=20),di
screte=TRUE)[] 
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 []\T1/pcr/m/n/10 fixDependence(X1,X2,tol=.Machine$double.eps^.5,rank.def=0,str
ict=FALSE) 
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 []\T1/pcr/m/n/10 gam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL,[] 
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[]\T1/ptm/m/n/10 A GAM for-mula, or a list of for-mu-lae (see [][][]\T1/pcr/m/n
/10 formula.gam[][][] []\T1/ptm/m/n/10 and also
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
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\T1/ptm/m/n/10 eral lin-ear func-tion-als of smooths, via the sum-ma-tion con-v
en-tion mech-a-nism de-scribed in
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[][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
gamObject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
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 []\T1/pcr/m/n/10 gam.control(nthreads=1,ncv.threads=1,irls.reg=0.0,epsilon = 1
e-07, 
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 []            \T1/pcr/m/n/10 maxit = 200,mgcv.tol=1e-7,mgcv.half=15, trace = F
ALSE,[] 
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 []         \T1/pcr/m/n/10 mustart = NULL, offset = rep(0, nobs), U1 = diag(nco
l(x)),[] 
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 []         \T1/pcr/m/n/10 printWarn=TRUE,scoreType="REML",null.coef=rep(0,ncol
(x)),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3593--3593
 []         \T1/pcr/m/n/10 pearson.extra=0,dev.extra=0,n.true=-1,Sl=NULL,nei=NU
LL,...)[] 
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[]\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/pcr/m/n/10 gam []\T1/ptm
/m/n/10 mod-els us-ing []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (
see
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 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
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[]\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix
ed penalty, if
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 []  \T1/pcr/m/n/9 mod <- gam(y~s(a,bs="re")+s(b,bs="re")+s(a,b,bs="re")+s(x0,i
d=1)+s(x1,id=1)+[] 
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 []\T1/pcr/m/n/10 gamlss.gH(X, jj, l1, l2, i2, l3 = 0, i3 = 0, l4 = 0, i4 = 0, 
d1b = 0, 
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[3000]
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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[]\T1/ptm/m/n/10 In the event of []\T1/pcr/m/n/10 lme []\T1/ptm/m/n/10 con-ver-
gence fail-ures, con-sider mod-i-fy-ing
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[][][]\T1/pcr/m/n/10 magic[][][] []\T1/ptm/m/n/10 for an al-ter-na-tive for cor
-re-lated data, [][][]\T1/pcr/m/n/10 te[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gam[][][][]\T1/ptm
/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 n
egbin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 vis.gam[][][][]\T1/ptm/m/n/1
0 ,[][][]\T1/pcr/m/n/10 pdTens[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gamm4 [
]\T1/ptm/m/n/10 ( [][]$\T1/pcr/m/n/10 https : / / cran . r-[]project .
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[]\T1/ptm/m/n/10 If `outer' it-er-a-tion has been used to fit the model (see []
[][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 ar-gu-ment
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[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
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 []\T1/pcr/m/n/10 ginla(G,A=NULL,nk=16,nb=100,J=1,interactive=FALSE,integ=0,app
rox=0) 
Underfull \hbox (badness 6708) in paragraph at lines 6130--6131
[]\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/pcr/m/n/10 gam(..
.,fit=FALSE) []\T1/ptm/m/n/10 or
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 []  \T1/pcr/m/n/9 ## example using a scale location model for the motorcycle d
ata. A simple[] 
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 []      \T1/pcr/m/n/9 } else lines(xg,predict(din,xg)$y,col=lcol[j],lwd=lwd[j]
,lty=lty[j])[] 
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 []  \T1/pcr/m/n/9 fv <- predict(b,se=TRUE) ## usual Gaussian approximation, fo
r comparison[] 
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 []       \T1/pcr/m/n/9 (1+exp(-10*(x[201:300]-.5)))-0.9933071) + z*(1-z)*5 + r
norm(100)*.4[] 
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 []\T1/pcr/m/n/10 jagam(formula,family=gaussian,data=list(),file,weights=NULL,n
a.action, 
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 []\T1/pcr/m/n/10 control=gam.control(),centred=TRUE,sp.prior = "gamma",diagona
lize=FALSE)[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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 []\T1/pcr/m/n/10 ldTweedie(y,mu=y,p=1.5,phi=1,rho=NA,theta=NA,a=1.001,b=1.999,
all.derivs=FALSE) 
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 []\T1/pcr/m/n/9 "The world is ruled by idiots because only an idiot would want
 to rule the world.",[] 
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 []      \T1/pcr/m/n/10 .Machine$double.eps^0.5),extra.rss=0,n.score=length(y),
nthreads=1)[] 
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[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
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 []\T1/pcr/m/n/9 ## Alternative, better scaling example, using the discrete opt
ion with bam...[] 
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 []\T1/pcr/m/n/9 for (sim in c(1,7)) { ## cycle over uncorrelated and correlate
d covariates[] 
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 []    \T1/pcr/m/n/9 dat1[[dname[i]]][dat1[[by.name]]] <- mean(dat1[[dname[i]]]
,na.rm=TRUE)[] 
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[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/pcr/m/n/10 Dim
.pdIndot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdIdnot[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 9533--9536
[]\T1/pcr/m/n/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 logDet.pd
Idnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdConstruct.pdIdnot[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3118) in paragraph at lines 9533--9536
[]\T1/pcr/m/n/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdMatrix.p
dIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 solve.pdIdnot[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 summary.pdIdnot[]\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 These func-tions ([]\T1/pcr/m/n/10 pdTens[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdFactor.p
dTens[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3108) in paragraph at lines 9589--9592
[]\T1/pcr/m/n/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdTens
 []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 summary.pdTens[]\T1/ptm/m/n/10 ) would n
ot nor-mally be
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 []\T1/pcr/m/n/10 plot(x,residuals=FALSE,rug=NULL,se=TRUE,pages=0,select=NULL,s
cale=-1,[] 
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 []         \T1/pcr/m/n/10 trans=I,seWithMean=FALSE,unconditional=FALSE,by.resi
ds=FALSE,[] 
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[]\T1/ptm/m/n/10 just won't let you do it. In this case, the quick-est op-tion 
is some-times to clone the
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 []        \T1/pcr/m/n/10 na.action=na.pass,cluster=NULL,discrete=TRUE,n.thread
s=1,gc.level=0,...)[] 
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[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 type=="terms" []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 type="iterms" []\T1/ptm/m/n/10 then terms (smooth or para-
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 []        \T1/pcr/m/n/10 na.action=na.pass,unconditional=FALSE,iterms.type=NUL
L,...)[] 
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 []\T1/pcr/m/n/9 x1 <- seq(.2,.8,length=m1);x2 <- seq(.2,.8,length=m2) ## margi
nal grid points[] 
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 []\T1/pcr/m/n/9 df <- data.frame(x0=rep(.5,n),x1=rep(x1,m2),x2=rep(x2,each=m1)
,x3=rep(0,n))[] 
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 []  \T1/pcr/m/n/9 Xi[,(i-1)*9+1:9+1] <- Xp[,(i-1)*9+1:9+1] ## Xi%*%coef(b) = s
mooth deriv i[] 
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[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
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\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
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[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
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[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
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\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
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[]\T1/ptm/m/n/10 The smooth ob-ject will be largely what is re-turned from
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[][][]\T1/pcr/m/n/10 smooth.construct.so.smooth.spec[][][][]\T1/ptm/m/n/10 , al
-though el-e-ments []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 S [
]\T1/ptm/m/n/10 are not needed,
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[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
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[]\T1/ptm/m/n/10 The sec-ond method rep-re-sents the con-ven-tional ran-dom ef-
fects in a GAM in the same
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\T1/ptm/m/n/10 way that the smooths are rep-re-sented --- as pe-nal-ized re-gre
s-sion terms. This method
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\T1/ptm/m/n/10 can be used with [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10
 by mak-ing use of []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms in a 
model: see
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[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/pcr/m/n
/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/pcr/m/n/10 gam[][][] []\T1
/ptm/m/n/10 can be used:
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\T1/ptm/m/n/10 see [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 . If s
mooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
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 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
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 []\T1/pcr/m/n/9 ## The effect of the new factor levels (or any interaction inv
olving them)[] 
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[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/pcr/m/n/
10 "deviance"[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/10 s(..., k=-1,fx=FALSE,bs="tp",m=NA,by=NA,xt=NULL,id=NULL,sp=NU
LL,pc=NULL) 
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 []  \T1/pcr/m/n/9 true <- mu + (del * sigma) * sinh((1/del) * asinh(qnorm(qq))
 + (eps/del))[] 
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 []\T1/pcr/m/n/9 b <- gam(list(accel~s(times, k=20, bs = "ad"), ~s(times, k = 1
0), ~1, ~1),[] 
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[]\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to
 model ma-trix X, or, if
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 []\T1/pcr/m/n/10 Sl.initial.repara(Sl, X, inverse = FALSE, both.sides = TRUE, 
cov = TRUE,[] 
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[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
Underfull \hbox (badness 10000) in paragraph at lines 12184--12188
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
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 [] \T1/pcr/m/n/9 range(er$values-um$values[ind]);range(abs(er$vectors)-abs(um$
vectors[,ind]))[] 
Underfull \hbox (badness 1975) in paragraph at lines 12339--12344
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
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Underfull \hbox (badness 1803) in paragraph at lines 12416--12420
\T1/ptm/m/n/10 The last en-try will be the []\T1/pcr/m/n/10 by []\T1/ptm/m/n/10
 vari-able, if []\T1/pcr/m/n/10 object$by []\T1/ptm/m/n/10 is not []\T1/pcr/m/n
/10 "NA"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 1502) in paragraph at lines 12428--12440
[]\T1/pcr/m/n/10 cs.smooth.spec []\T1/ptm/m/n/10 (cu-bic re-gres-sion splines w
ith shrinkage-to-zero); []\T1/pcr/m/n/10 cc.smooth.spec
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[]\T1/ptm/m/n/10 method is used if there is no more spe-cific method avail-able
. Plot meth-ods can be
Underfull \hbox (badness 2970) in paragraph at lines 12445--12449
\T1/ptm/m/n/10 added for spe-cific smooth classes, see source code for []\T1/pc
r/m/n/10 mgcv:::plot.sos.smooth[]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of on
e or two vari-ables, spec-i-fied via terms like
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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 []  \T1/pcr/m/n/9 b <- gam(y~s(x0,bs=bs,m=c(4,2))+s(x1,bs=bs)+s(x2,k=15,bs=bs,
m=c(4,3,0))+[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12865--12865
 []  \T1/pcr/m/n/9 ## now a model with first order penalty evaluated over (-.5,
1.5) (black)[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 12877--12877
 []  \T1/pcr/m/n/9 ## penalty defined on (-.5,1.5) gives plausible predictions 
and intervals[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12882--12882
 []  \T1/pcr/m/n/9 ## penalty defined on whole real line gives constant width i
ntervals away[] 
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 []  \T1/pcr/m/n/9 ## penalty defined only over the data interval (0,1) gives w
ild and wide[] 
Overfull \hbox (3.70428pt too wide) in paragraph at lines 12889--12889
 []  \T1/pcr/m/n/9 ## extrapolation since penalty has been \TS1/cmtt/m/n/9 `\T1
/pcr/m/n/9 turned off\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 outside data range:[] 
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a
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\T1/ptm/m/n/10 term []\T1/pcr/m/n/10 s(...,bs="cr",...)[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 s(...,bs="cs",...) []\T1/ptm/m/n/10 or
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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 []\T1/pcr/m/n/9 b <- gam(y~s(x,z,bs="ds",m=c(1,.5),k=50),data=data)  ## first 
deriv penalty[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 13170--13170
 []\T1/pcr/m/n/9 b1 <- gam(y~s(x,z,bs="ds",m=c(2,.5),k=50),data=data) ## modifi
ed 2nd deriv[] 
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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 []\T1/pcr/m/n/9 b <- gam(crime ~ s(district,bs="mrf",k=20,xt=xt),data=columb,m
ethod="REML")[] 
[3149]
Underfull \hbox (badness 10000) in paragraph at lines 13634--13636
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 smooth.construct []\T1/ptm/m/n/10 met
hod a smooth spec-i-fi-ca-tion ob-
Underfull \hbox (badness 3312) in paragraph at lines 13793--13796
\T1/ptm/m/n/10 ject, usu-ally gen-er-ated by a term []\T1/pcr/m/n/10 s(x,...,bs
="re",)[]\T1/ptm/m/n/10 . For the
Underfull \hbox (badness 7099) in paragraph at lines 13793--13796
[]\T1/pcr/m/n/10 predict.Matrix []\T1/ptm/m/n/10 method an ob-ject of class []\
T1/pcr/m/n/10 "random.effect"
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 13879--13879
 []\T1/pcr/m/n/9 b <- c(rnorm(nb/2)*2,rnorm(nb/2)*.5) ## random effect now with
 2 variances[] 
[3154]
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[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
Underfull \hbox (badness 7832) in paragraph at lines 13924--13930
[]\T1/pcr/m/n/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a
 []\T1/pcr/m/n/10 gam []\T1/ptm/m/n/10 for-
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 []\T1/pcr/m/n/9 ## notice NULL element in \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 xt\TS1
/pcr/m/n/9 ' \T1/pcr/m/n/9 list - to indicate no xt object for "cr" basis...[] 
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Underfull \hbox (badness 10000) in paragraph at lines 14242--14250
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths on th
e sphere, via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14268--14269
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[]\T1/ptm/m/n/10 method an ob-ject of class []\T1/pcr/m/n/10 "sz.interaction" [
]\T1/ptm/m/n/10 pro-duced by the
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[]\T1/ptm/m/n/10 The terms can have a smooth-ing pa-ram-e-ter per smooth, or a 
sin-gle smooth-ing pa-ram-e-
Overfull \hbox (128.58029pt too wide) in paragraph at lines 14480--14480
 []\T1/pcr/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs
="sz",id=1),data=dat,method="REML")[] 
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Underfull \hbox (badness 3396) in paragraph at lines 14626--14629
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of an
y num-ber of vari-ables, spec-i-fied via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14671--14673
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[]\T1/pcr/m/n/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see
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Underfull \hbox (badness 10000) in paragraph at lines 14996--15000
[][][]\T1/pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Duchon.spline[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cubic.regression.spline[][][][]\T1/ptm/m/n/
10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14996--15000
[][][]\T1/pcr/m/n/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 d.sp
line[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 mrf[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 soap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Spherical
.Spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 adaptive.smooth[][][][]\T1
/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14996--15000
[][][]\T1/pcr/m/n/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
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Overfull \hbox (48.78088pt too wide) in paragraph at lines 15364--15364
 []\T1/pcr/m/n/10 spasm.sp(object,sp,w=rep(1,object$nobs),get.trH=TRUE,block=0,
centre=FALSE)[] 
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 []                  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars
"),...)[] 
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[3183]
Underfull \hbox (badness 4846) in paragraph at lines 15629--15632
[]\T1/ptm/m/n/10 The es-ti-mated co-vari-ance ma-trix of the pa-ram-e-ters (or 
es-ti-ma-tors if
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 []\T1/pcr/m/n/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL,
unconditional=FALSE, ...)[] 
[3204]
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[]\T1/ptm/m/n/10 Basically, just ex-tracts []\T1/pcr/m/n/10 object$Ve[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 object$Vp []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 object
$Vc []\T1/ptm/m/n/10 (if avail-able) from a
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 []\T1/pcr/m/n/10 XWXd(X,w,k,ks,ts,dt,v,qc,nthreads=1,drop=NULL,ar.stop=-1,ar.r
ow=-1,ar.w=-1, 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 17061--17061
 []\T1/pcr/m/n/10 XWyd(X,w,y,k,ks,ts,dt,v,qc,drop=NULL,ar.stop=-1,ar.row=-1,ar.
w=-1,lt=NULL)[] 
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 []\T1/pcr/m/n/10 diagXVXd(X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,rt=
NULL)[] 
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[]\T1/ptm/m/n/10 Negative to ig-nore. Oth-er-wise sum rows
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[]\T1/pcr/m/n/10 (ar.stop[i-1]+1):ar.stop[i] []\T1/ptm/m/n/10 of the rows se-le
cted by []\T1/pcr/m/n/10 ar.row
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 []\T1/pcr/m/n/9 ## 1. If the zero inflation rate becomes decoupled from the li
near predictor,[] 
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 []\T1/pcr/m/n/9 ## it is possible for the linear predictor to be almost unboun
ded in regions[] 
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 []\T1/pcr/m/n/9 ## 3. Refit fixing the theta parameters at their estimated val
ues, to check we[] 
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Chapter 25.
[3217]
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[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 448--448
 []  \T1/pcr/m/n/9 lme(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
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[3224]
[3225]
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 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 251-254 ---------------------------
---------------[] 
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 []\T1/pcr/m/n/9 # Compare an "lme" object with a "gls" object (test would be n
on-sensical!)[] 
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 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 222-225 ---------------------------
---------------[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 615--615
 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 352-365 ---------------------------
---------------[] 
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 []                  \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxil
lary fissure"),[] 
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[]\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 http://stat.gamma.rug.nl/snijders/multilevel
.htm[]\T1/ptm/m/n/10 ', the first edi-tion of
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[][][]\T1/pcr/m/n/10 lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fixed.
effects.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ranef.lmList[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.ranef.lmList[][][][]\T1/ptm/m/n/10 
,
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[]\T1/ptm/m/n/10 This method func-tion ex-tracts the co-ef-fi-cients as-so-ci-a
ted with each com-po-nent of the
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\T1/ptm/m/n/10 is in-ner to the []\T1/pcr/m/n/10 displayLevel []\T1/ptm/m/n/10 
group-ing fac-tor. If equal to []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 fitted model ob-jects, from which pre-dic-tions can be ex-trac
ted us-ing the
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Underfull \hbox (badness 4168) in paragraph at lines 2238--2244
[][][]\T1/pcr/m/n/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corAR
MA[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 ,
[3251]
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 []  \T1/pcr/m/n/9 gls(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
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[][][]\T1/pcr/m/n/10 corFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cor
Matrix.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 recalc.corStruct[
][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corGau
s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corLin[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corSp
her[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T
1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 5116--5120
[][][]\T1/pcr/m/n/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/p
cr/m/n/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 5540--5543
[][][]\T1/pcr/m/n/10 getGroups.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 getGro
ups.gls[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 2799) in paragraph at lines 6044--6050
\T1/ptm/m/n/10 covariance ma-trix, ei-ther []\T1/pcr/m/n/10 "random.effects" []
\T1/ptm/m/n/10 for the random-effects
[3311]
Underfull \hbox (badness 7133) in paragraph at lines 6105--6109
[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3312]
Underfull \hbox (badness 2057) in paragraph at lines 6194--6205
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gl
sControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 glsObject[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gls[][][][]
\T1/ptm/m/n/10 ,
[3313]
Underfull \hbox (badness 10000) in paragraph at lines 6258--6260
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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[3317]
Underfull \hbox (badness 7133) in paragraph at lines 6505--6509
[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3318]
Underfull \hbox (badness 10000) in paragraph at lines 6602--6608
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gn
lsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsObject[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 predict.gnls[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (54.78088pt too wide) in paragraph at lines 6629--6629
 []\T1/pcr/m/n/10 gnlsControl(maxIter = 50, nlsMaxIter = 7, msMaxIter = 50, min
Scale = 0.001, 
[3319]
Underfull \hbox (badness 10000) in paragraph at lines 6667--6669
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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Underfull \hbox (badness 10000) in paragraph at lines 6936--6943
[][][]\T1/pcr/m/n/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gappl
y[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gsummary[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nff
GroupedData[][][][]\T1/ptm/m/n/10 ,
[3324]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6954--6954
 []                \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxilla
ry fissure" ),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6959--6959
 []\T1/pcr/m/n/9 fm1 <- lme( Orth.new )   # fixed and groups formulae extracted
 from object[] 
Underfull \hbox (badness 2875) in paragraph at lines 6981--6983
[]\T1/ptm/m/n/10 an ob-ject to be sum-ma-rized - usu-ally a []\T1/pcr/m/n/10 gr
oupedData []\T1/ptm/m/n/10 ob-ject or a
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Underfull \hbox (badness 10000) in paragraph at lines 7196--7202
[][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr
/m/n/10 Initialize.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initi
alize.lmeStruct[][][][]\T1/ptm/m/n/10 ,
[3328]
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[3330]
Underfull \hbox (badness 1997) in paragraph at lines 7341--7349
[]\T1/ptm/m/n/10 an op-tional list with con-trol pa-ram-e-ters for the ini-tial
-iza-tion and op-ti-
Underfull \hbox (badness 2205) in paragraph at lines 7341--7349
\T1/ptm/m/n/10 miza-tion al-go-rithms used in []\T1/pcr/m/n/10 lme[]\T1/ptm/m/n
/10 . De-faults to []\T1/pcr/m/n/10 list(niterEM=20,
Underfull \hbox (badness 3118) in paragraph at lines 7364--7367
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initializ
e.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.varFunc[][][][]\T1/ptm/m/
n/10 ,
[3331]
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Underfull \hbox (badness 3354) in paragraph at lines 7574--7576
[]\T1/ptm/m/n/10 linear model co-ef-fi-cients, only present when []\T1/pcr/m/n/
10 which []\T1/ptm/m/n/10 is not equal to
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Underfull \hbox (badness 10000) in paragraph at lines 8101--8118
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lm
e.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme.groupedData[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 lmeObject[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 8101--8118
[][][]\T1/pcr/m/n/10 lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmL
ist[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 plot.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
predict.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qqnorm.lme[][][][]\T1/
ptm/m/n/10 ,
[3342]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 8144--8144
 []    \T1/pcr/m/n/10 subset, method, na.action, control, contrasts, keep.data 
= TRUE)[] 
Underfull \hbox (badness 1642) in paragraph at lines 8153--8175
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
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[3346]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 8418--8418
 []\T1/pcr/m/n/10 lmeControl(maxIter = 50, msMaxIter = 50, tolerance = 1e-6, ni
terEM = 25, 
Underfull \hbox (badness 1189) in paragraph at lines 8443--8445
[]\T1/ptm/m/n/10 maximum num-ber of eval-u-a-tions of the ob-jec-tive func-tion
 per-mit-ted for
[3347]
Underfull \hbox (badness 10000) in paragraph at lines 8466--8468
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
Overfull \hbox (9.78043pt too wide) in paragraph at lines 8509--8509
 []\T1/pcr/m/n/9 # request that information on the evolution of the ms iteratio
ns be printed[] 
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Underfull \hbox (badness 10000) in paragraph at lines 9266--9273
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 gls[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.corStruct[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9277--9277
 []\T1/pcr/m/n/9 fm1 <- lme(distance ~ Sex * age, Orthodont, random = ~ age, me
thod = "ML") 
[3360]
[3361]
[3362]
[3363]
[3364]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  
[3365]
Underfull \hbox (badness 10000) in paragraph at lines 9648--9651
[]\T1/ptm/m/n/10 a ma-trix, or list of ma-tri-ces, with the same di-men-sions a
s
Underfull \hbox (badness 3108) in paragraph at lines 9692--9695
[]\T1/ptm/m/n/10 a ma-trix with the new val-ues to be as-signed to the positive
-definite
Underfull \hbox (badness 2521) in paragraph at lines 9692--9695
\T1/ptm/m/n/10 ma-trix rep-re-sented by []\T1/pcr/m/n/10 object[]\T1/ptm/m/n/10
 . Must have the same di-men-sions as
[3366]
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[3373]
[3374]
[3375]
[3376]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10362--10362
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights, 
[3377]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10366--10366
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
Underfull \hbox (badness 1596) in paragraph at lines 10395--10421
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[3378]
[3379]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10549--10549
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
[3380]
[3381]
[3382]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 10700--10700
 []            \T1/pcr/m/n/10 opt = c("nlminb", "nlm"), natural = TRUE, sigma =
 NULL, ...)[] 
Underfull \hbox (badness 2213) in paragraph at lines 10711--10716
[]\T1/ptm/m/n/10 maximum num-ber of it-er-a-tions for [][][]\T1/pcr/m/n/10 nlmi
nb[][][] []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 iter.max[]\T1/ptm/m/n/10 ) or the [
][][]\T1/pcr/m/n/10 nlm[][][]
Underfull \hbox (badness 6961) in paragraph at lines 10733--10737
[]\T1/ptm/m/n/10 a log-i-cal value passed as the []\T1/pcr/m/n/10 trace []\T1/p
tm/m/n/10 to [][][]\T1/pcr/m/n/10 nlminb[][][](.., control=
[3383]
Underfull \hbox (badness 10000) in paragraph at lines 10752--10754
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3384]
[3385]
[3386]
[3387]
Overfull \hbox (96.18033pt too wide) in paragraph at lines 11048--11048
 []\T1/pcr/m/n/9 cfm1 <- confint(fm1) # via profiling each % FIXME: only *one* 
message instead of one *each*[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 11049--11049
 []\T1/pcr/m/n/9 mat.class <- class(matrix(1)) # ("matrix", "array") for R >= 4
.0.0;  ("matrix" in older R)[] 
[3388]
[3389]
[3390]
[3391]
[3392]
[3393]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 11439--11439
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3394]
[3395]
[3396]
[3397]
[3398]
[3399]
Underfull \hbox (badness 6268) in paragraph at lines 11826--11836
[][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdMatrix[][][][]\T1/ptm/m/n/10 ,
[3400]
[3401]
[3402]
[3403]
Underfull \hbox (badness 10000) in paragraph at lines 12087--12093
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 coef.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 pdConstruct[][][][]\T1/ptm/m/n/10 ,
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[3408]
Underfull \hbox (badness 6876) in paragraph at lines 12409--12411
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 value []\T1/ptm/m/n/10 is an \T1/ptm/m/it/
10 ini-tial-ized []\T1/pcr/m/n/10 pdMat []\T1/ptm/m/n/10 ob-ject, []\T1/pcr/m/n
/10 object []\T1/ptm/m/n/10 will be con-structed from
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[3410]
Underfull \hbox (badness 2452) in paragraph at lines 12565--12572
[][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
pdNatural[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdSymm[][][][]\T1/ptm/m/
n/10 , [][][]\T1/pcr/m/n/10 reStruct[][][][]\T1/ptm/m/n/10 ,
[3411]
Underfull \hbox (badness 10000) in paragraph at lines 12631--12637
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pdMatrix.reStruct[][][][]\T1/ptm/m/n/10 ,
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[3418]
[3419]
[3420]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 13220--13220
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3421]
[3422]
[3423]
[3424]
[3425]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13585--13585
 []\T1/pcr/m/n/9 plot(fm1, resid(., type = "pool") ~ fitted(.) | Sex, abline = 
0, id = 0.05)[] 
[3426]
Underfull \hbox (badness 10000) in paragraph at lines 13612--13615
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nffGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3427]
Underfull \hbox (badness 1838) in paragraph at lines 13655--13662
[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/pcr/m/
n/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/pcr/m/n/10 inner
Underfull \hbox (badness 3713) in paragraph at lines 13655--13662
[]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 innerGroups []\T1/ptm/m/n/10 are non-[]\T1
/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 , a leg-end for the dif-fer-ent []\T1/pcr/m/n/
10 inner
Overfull \hbox (12.78088pt too wide) in paragraph at lines 13712--13712
 []\T1/pcr/m/n/10 plot(x, outer, inner, innerGroups, xlab, ylab, strip, aspect,
 panel,[] 
[3428]
Underfull \hbox (badness 10000) in paragraph at lines 13719--13722
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nfnGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
Underfull \hbox (badness 2469) in paragraph at lines 13719--13722
[]\T1/pcr/m/n/10 groupedData []\T1/ptm/m/n/10 ob-ject with a nu-meric pri-mary 
co-vari-ate and a sin-gle
[3429]
Underfull \hbox (badness 10000) in paragraph at lines 13827--13830
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nmGrouped
Data[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3430]
[3431]
Underfull \hbox (badness 10000) in paragraph at lines 13921--13923
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 c
ollapse.groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nfnGroupe
dData[][][][]\T1/ptm/m/n/10 ,
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[3436]
[3437]
[3438]
[3439]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 14445--14445
 []\T1/pcr/m/n/9 newOrth <- data.frame(Sex = c("Male","Male","Female","Female",
"Male","Male"),[] 
[3440]
[3441]
[3442]
[3443]
[3444]
[3445]
[3446]
[3447]
[3448]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef
fects}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15098 ...Extract Random Effects}{random.effects}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef
fects.1}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15098 ...Extract Random Effects}{random.effects}
                                                  
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[3459]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 15734--15734
 []\T1/pcr/m/n/9 plot(Remifentanil, type = "l", lwd = 2) # shows the 65 patient
s\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 remi profiles 
[3460]
Underfull \hbox (badness 1009) in paragraph at lines 15786--15795
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3461]
[3462]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 15933--15933
 []          \T1/pcr/m/n/10 type = c("response", "pearson", "normalized"), asLi
st = FALSE, ...)[] 
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[3464]
[3465]
[3466]
[3467]
Underfull \hbox (badness 10000) in paragraph at lines 16268--16274
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 l
me[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 solve.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 summary.reStruct[][][][]\T1/ptm/m/n/10 ,
[3468]
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 []         \T1/pcr/m/n/10 method = c("REML", "ML"), niterEM = c(40, 200), useG
en, ...)[] 
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[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
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\T1/pcr/m/n/10 of an Identity" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdIdent[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Positive-Definite,
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\T1/pcr/m/n/10 Natural Parametrization" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 p
dNatural[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General
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\T1/pcr/m/n/10 Positive-Definite" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdSymm[
]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 data.class(object)
[3481]
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[]\T1/pcr/m/n/10 "Constant plus power of variance
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[]\T1/pcr/m/n/10 "Constant plus proportion of variance
[3482]
[3483]
[3484]
[3485]
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[][][]\T1/pcr/m/n/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varCo
nstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varConstProp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varIdent[][][][]\T1
/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 # Generate some synthetic data using the two-component error m
odel and use 
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 []\T1/pcr/m/n/9 # overparameterisation in the case of a constant term in the v
ariance function[] 
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[][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rLin[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 Variogram.corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogr
am.corSpher[][][][]\T1/ptm/m/n/10 ,
[3496]
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 "[][]corR
atio[][][]"[]\T1/ptm/m/n/10 , rep-re-sent-ing an Ra-tio-nal
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3500]
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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[][][]\T1/pcr/m/n/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Va
riogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.default[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 18471--18480
[][][]\T1/pcr/m/n/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 Variogram.corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rRatio[][][][]\T1/ptm/m/n/10 ,
[3501]
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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[3503]
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[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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[3505]
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[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3506]
[3507]
[3508]
[3509]
[3510]
[3511]
[3512]
[3513]
[3514]) (./nnet-pkg.tex
Chapter 26.
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) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom.
1}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  
[3515]
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 []         \T1/pcr/m/n/10 contrasts = NULL, Hess = FALSE, summ = 0, censored =
 FALSE,[] 
[3516]
[3517]
[3518]
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 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3519]
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 []\T1/pcr/m/n/9 targets <- matrix(c(rep(c(1,0,0),50), rep(c(0,1,0),50), rep(c(
0,0,1),50)),[] 
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 []\T1/pcr/m/n/9 ir1 <- nnet(ir[samp,], targets[samp,], size=2, rang=0.1, decay
=5e-4, maxit=200)[] 
[3520]
[3521]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 511--511
 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3522]) (./rpart-pkg.tex
Chapter 27.
[3523]
[3524]
[3525]
[3526]
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 []\T1/pcr/m/n/10 labels(object, digits = 4, minlength = 1L, pretty, collapse =
 TRUE, ...)[] 
[3527]
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\T1/ptm/m/n/10 age: []\T1/pcr/m/n/10 pretty = 0 []\T1/ptm/m/n/10 im-plies []\T1
/pcr/m/n/10 minlength = 0L[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pretty = NULL []\
T1/ptm/m/n/10 im-plies
[3528]
[3529]
[3530]
Underfull \hbox (badness 1442) in paragraph at lines 592--598
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , the leaf nodes wil
l be at the hor-i-zon-tal plot co-or-di-nates of
[3531]
[3532]
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 []     \T1/pcr/m/n/10 filename = paste(deparse(substitute(tree)), ".ps", sep =
 ""),[] 
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[]\T1/ptm/m/n/10 Logical. If []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault),
 adds to the la-bel
Underfull \hbox (badness 1142) in paragraph at lines 771--775
\T1/pcr/m/n/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method [
]\T1/pcr/m/n/10 class[]\T1/ptm/m/n/10 , \T1/pcr/m/n/10 n
[3533]
[3534]
[3535]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 915--915
 []\T1/pcr/m/n/9 predict(fit, type = "matrix") # level number, class frequencie
s, probabilities[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 934--934
 []\T1/pcr/m/n/10 print(x, minlength = 0, spaces = 2, cp, digits = getOption("d
igits"),[] 
[3536]
[3537]
[3538]
[3539]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 1180--1180
 []\T1/pcr/m/n/10 rpart(formula, data, weights, subset, na.action = na.rpart, m
ethod, 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1181--1181
 []      \T1/pcr/m/n/10 model = FALSE, x = FALSE, y = TRUE, parms, control, cos
t, ...)[] 
Underfull \hbox (badness 2846) in paragraph at lines 1243--1245
[]\T1/ptm/m/n/10 a list of op-tions that con-trol de-tails of the []\T1/pcr/m/n
/10 rpart []\T1/ptm/m/n/10 al-go-rithm. See
[3540]
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 []\T1/pcr/m/n/9 par(mfrow = c(1,2), xpd = NA) # otherwise on some devices the 
text is clipped[] 
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 []\T1/pcr/m/n/10 rpart.control(minsplit = 20, minbucket = round(minsplit/3), c
p = 0.01, 
Overfull \hbox (60.78088pt too wide) in paragraph at lines 1304--1304
 []              \T1/pcr/m/n/10 maxcompete = 4, maxsurrogate = 5, usesurrogate 
= 2, xval = 10,[] 
[3541]
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[3543]
[3544]
[3545]
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[3547]
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[]\T1/ptm/m/n/10 the ploidy sta-tus of the tu-mor, from flow cy-tom-e-try. Val-
ues are `[]\T1/pcr/m/n/10 diploid[]\T1/ptm/m/n/10 ',
[3548]
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 []     \T1/pcr/m/n/10 pretty = NULL, digits = getOption("digits") - 3, use.n =
 FALSE,[] 
[3549]
[3550]
[3551]) (./spatial-pkg.tex
[3552]
Chapter 28.
[3553]
[3554]
[3555]
[3556]
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[3559]
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[3566]
[3567]
[3568]
[3569]
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[3571]) (./survival-pkg.tex
[3572]
Chapter 29.
[3573]
[3574]
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 []\T1/pcr/m/n/9 aareg(formula = Surv(time, status) ~ age + sex + ph.ecog, data
 = lung, nmin = 1[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 192--192
 []\T1/pcr/m/n/9 ## Not run: lines(lfit2[4], col=2)  # Nearly the same, until t
he last point[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 195--195
 []\T1/pcr/m/n/9 # Chronic Granuomatous Disease.  See section 8.5 of Therneau a
nd Grambsch.[] 
[3575]
[3576]
Underfull \hbox (badness 6412) in paragraph at lines 284--286
[]\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as 
long as
[3577]
[3578]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml.1}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                  
[3579]
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 []\T1/pcr/m/n/9 fit <- coxph(Surv(futime, fustat) ~ resid.ds *rx + ecog.ps, da
ta = ovarian) 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 487--487
 []\T1/pcr/m/n/9 fit2 <- coxph(Surv(futime, fustat) ~ resid.ds +rx + ecog.ps, d
ata=ovarian)[] 
[3580]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 525--525
 []    \T1/pcr/m/n/10 survreg(Surv(time, status) ~ age + sex + factor(ph.ecog),
 lung)[] 
[3581]
Underfull \hbox (badness 1178) in paragraph at lines 605--615
[]\T1/ptm/m/n/10 If H(t; z) is the pre-dicted cu-mu-la-tive haz-ard for an ob-s
er-va-tion with co-vari-ate vec-tor z,
[3582]
[3583]
[3584]
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 []\T1/pcr/m/n/9 py <- pseudo(survfit(Surv(time, status) ~1, lung), time=730) #
2 year survival 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 808--808
 []\T1/pcr/m/n/10 brier(fit, times, newdata, ties = TRUE, detail = FALSE, timef
ix = TRUE, 
[3585]
[3586]
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 []    \T1/pcr/m/n/10 method =c("Prentice","SelfPrentice","LinYing","I.Borgan",
"II.Borgan"),[] 
[3587]
[3588]
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 []   \T1/pcr/m/n/9 subcoh = ~subcohort, id=~seqno, stratum=~instit, cohort.siz
e=stratsizes,[] 
[3589]
[3590]
Underfull \hbox (badness 1097) in paragraph at lines 1205--1207
[]\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi
al and negative-binomial data.
[3591]
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 []\T1/pcr/m/n/9 ppois(4, 10.24153)     #chance of seeing 4 or fewer events wit
h large rate[] 
[3592]
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 []\T1/pcr/m/n/9 ## Not run: clogit(case ~ spontaneous + induced + strata(strat
um), data=infert) 
[3593]
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 []\T1/pcr/m/n/9 marginal.model <- coxph(Surv(time, status) ~ rx, data= rats, c
luster=litter, 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1407 ...erapy for Stage B/C colon cancer}{colon}
                                                  
[3594]
[3595]
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 []  \T1/pcr/m/n/10 influence=0, ranks = FALSE, reverse=FALSE, timefix=TRUE, ke
epstrata=10, ...)[] 
[3596]
[3597]
[3598]
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 []\T1/pcr/m/n/9 options(na.action = na.exclude)   # predict all 1384 obs, incl
uding missing[] 
[3599]
[3600]
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 []\T1/pcr/m/n/10 cox.zph(fit, transform="km", terms=TRUE, singledf=FALSE, glob
al=TRUE) 
[3601]
[3602]
[3603]
[3604]
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[]\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f
ol-low the ad-vice of
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\T1/ptm/m/n/10 some cod-ing guides and prepend []\T1/pcr/m/n/10 survival:: []\T
1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the spe-
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\T1/ptm/m/n/10 cial terms, e.g., []\T1/pcr/m/n/10 survival::coxph(survival:Surv
(time, status) ~ age +
[3605]
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[][][]\T1/pcr/m/n/10 coxph.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
coxphms.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxph.control[][][]
[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cluster[][][][]\T1/ptm/m/n/10 , [][][]\
T1/pcr/m/n/10 strata[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Surv[][][][]\
T1/ptm/m/n/10 ,
[3606]
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 []\T1/pcr/m/n/10 iter.max = 20, toler.inf = sqrt(eps), outer.max = 10, timefix
=TRUE)[] 
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[3608]
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[3613]
[3614]
[3615]
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 [] \T1/pcr/m/n/9 [1] "extreme"     "logistic"    "gaussian"    "weibull"     "
exponential"[] 
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 []\T1/pcr/m/n/10 finegray(formula, data, weights, subset, na.action= na.pass, 
etype, 
[3616]
[3617]
[3618]
[3619]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3227--3227
 []\T1/pcr/m/n/10 frailty.t(x, sparse = (nclass > 5), theta, df, eps = 1e-05, t
df = 5,[] 
[3620]
[3621]
[3622]
[3623]
Underfull \hbox (badness 1019) in paragraph at lines 3489--3491
[]\T1/ptm/m/n/10 outcome: []\T1/pcr/m/n/10 censor[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 thymic lymphoma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 reticulum cell sarcoma
 other
[3624]
[3625]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3634--3634
 []\T1/pcr/m/n/9 kfit <- coxph(Surv(time, status)~ age + sex + disease + frailt
y(id), kidney) 
[3626]
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 []           \T1/pcr/m/n/9 factor(c(0, 1, 2,1,0,2), 0:2, c("censored", "progre
ssion", "death")))[] 
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[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
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 []        \T1/pcr/m/n/10 conf.type = c("log", "log-log", "plain", "logit", "ar
csin"),[] 
[3627]
[3628]
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 []                 \T1/pcr/m/n/9 rmap=list(sex=sex, age=age*365.35, year=as.Da
te(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 1979/01/01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3629]
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 [] [] 
[3631]
[3632]
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 []\T1/pcr/m/n/9 # surprise) but their rates of conversion to PCM are essential
ly the same.[] 
[3633]
[3634]
[3635]
[3636]
[3637]
[3638]
[3639]
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 []                    \T1/pcr/m/n/9 entry.dt = as.Date(paste("2011", 1:10, "5"
, sep=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 -\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3640]
[3641]
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 []\T1/pcr/m/n/9 tdata <- data.frame(x= lung$age, y = 10*log(lung$age-35) + rno
rm(228, 0, 2))[] 
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 []\T1/pcr/m/n/9 knots <- unlist(attributes(fit1$model[[2]])[c(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 Boundary.knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , \TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )])[] 
[3642]
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 []\T1/pcr/m/n/9 unname(coef(fit1)[-1] - coef(fit1)[1])  # differences: yhat[2:
4] - yhat[1][] 
[3643]
[3644]
[3645] [3646]
[3647]
[3648]
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 [] \T1/pcr/m/n/10 pch=3, col=1, lty=1, lwd=1, cex=1, log=FALSE, xscale=1, ysca
le=1,[] 
[3649]
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 []\T1/pcr/m/n/10 se.fit=FALSE, na.action=na.pass, terms=names(object$assign), 
collapse,[] 
[3652]
[3653]
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 []\T1/pcr/m/n/9 mresid <- (lung$status-1) - predict(fit, type=\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 expected\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ) #Martingale resid[] 
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 []  \T1/pcr/m/n/9 predict(fit, reference="sample") + sum(coef(fit) * fit$means
, na.rm=TRUE)[] 
[3654]
[3655]
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 []\T1/pcr/m/n/9 pct <- 1:98/100   # The 100th percentile of predicted survival
 is at +infinity[] 
[3656]
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 []  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars"), expand=FALSE
, ...)[] 
[3657]
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[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.survfit"[]\T1/pt
m/m/n/10 , which is the re-sult of the
[3658]
[3659]
[3660]
[3661]
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 []\T1/pcr/m/n/9 rhat <- predict(rfit, newdata=expand.grid(ph.ecog=0:3, sex=1:2
), se.fit=TRUE)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6032--6032
 []\T1/pcr/m/n/9 # the estimate for ph.ecog=3 is very unstable (n=1), pseudoval
ues smooth it.[] 
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 []\T1/pcr/m/n/9 # In all the above we should be using the robust variance, e.g
., svyglm, but[] 
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 []\T1/pcr/m/n/10 pspline(x, df=4, theta, nterm=2.5 * df, degree=3, eps=0.1, me
thod, 
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 []   \T1/pcr/m/n/10 Boundary.knots=range(x), intercept=FALSE, penalty=TRUE, co
mbine, ...)[] 
[3662]
[3663]
[3664]
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 []  \T1/pcr/m/n/10 py <- pyears(futime ~ rx, rmap=list(age=age, sex=sex, year=
entry.dt),[] 
[3665]
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 []\T1/pcr/m/n/9 pfit <- pyears(Surv(ptime/365.25, pstat) ~ temp.yr + temp.age 
+ sex,  mgus,[] 
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 []\T1/pcr/m/n/9 fit1 <- pyears(Surv(stop/365.25, event) ~ cut(age + 48, c(0,50
,60,70,100)) +[] 
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 []\T1/pcr/m/n/9 fit2 <- pyears(Surv(stop/365.25, event) ~ tcut(age + 48, c(0,5
0,60,70,100)) +[] 
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[3667]
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[3669]
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[3672]
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 []\T1/pcr/m/n/9 gfit <- survfit(Surv(day1, day2, status) ~ batch, braking, id=
 locomotive)[] 
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 []     \T1/pcr/m/n/9 xlab="Locomotive Age in Months", ylab="Mean cumulative nu
mber replacements")[] 
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 []\T1/pcr/m/n/9 #  natural target, an estimate of the number of replacements b
y a given time[] 
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 []\T1/pcr/m/n/9 # When two valve seats failed at the same inspection, we need 
to jitter one[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6810--6810
 []\T1/pcr/m/n/9 ties <- which(with(valveSeat, diff(id)==0 & diff(time)==0))  #
first of a tie[] 
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 []\T1/pcr/m/n/9 vdata$time1 <- ifelse(!duplicated(vdata$id), 0, c(0, temp[-len
gth(temp)]))[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 6841--6841
 []       \T1/pcr/m/n/10 collapse=FALSE, weighted= (type %in% c("dfbeta", "dfbe
tas")), ...)[] 
[3673]
[3674]
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 []    \T1/pcr/m/n/10 type="pstate", collapse=FALSE, weighted= collapse, data.f
rame=FALSE,[] 
[3675]
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 []\T1/pcr/m/n/10 residuals(object, type=c("response", "deviance","dfbeta","dfb
etas",[] 
Underfull \hbox (badness 1043) in paragraph at lines 7046--7049
[]\T1/pcr/m/n/10 "dfbetas"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "working"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "ldcase"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lsresp
"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ldshape"[]\T1/ptm/m/n/10 , and
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[3679]
[3680]
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 []\T1/pcr/m/n/9 lfit1 <- survreg(Surv(time, status) ~ age + ridge(ph.ecog, the
ta=5), lung)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 7354--7354
 []\T1/pcr/m/n/9 lfit2 <- survreg(Surv(time, status) ~ sex + ridge(age, ph.ecog
, theta=1), lung)[] 
[3681]
[3682]
[3683]
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 []\T1/pcr/m/n/10 rttright(formula, data, weights, subset, na.action, times, id
, timefix = TRUE, 
[3684]
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 []\T1/pcr/m/n/9 cdf <- cdf[!duplicated(aml$time[index], fromLast=TRUE)]  # rem
ove duplicate times[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7631--7631
 []\T1/pcr/m/n/9 wt2 <- rttright(Surv(dtime, death) ~ hormon, rotterdam, times=
 365*c(3, 5))[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7635 ...ata from a soldering experiment}{solder}
                                                  
[3685]
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 []\T1/pcr/m/n/9 dummy <- expand.grid(Opening= c("S", "M", "L"), Solder=c("Thin
", "Thick"))[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 7692--7692
 []            \T1/pcr/m/n/9 dimnames=list(Opening= c("S", "M", "L"), Solder=c(
"Thin", "Thick")))[] 
[3686]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 7752--7752
 []\T1/pcr/m/n/10 statefig(layout, connect, margin = 0.03, box = TRUE, cex = 1,
 col = 1, 
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[3688]
[3689]
[3690]
[3691]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 8118--8118
 []\T1/pcr/m/n/10 event = TRUE, pyears = TRUE, expected = TRUE, rate = FALSE, r
r =expected,[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 8119--8119
 []\T1/pcr/m/n/10 ci.r = FALSE, ci.rr = FALSE, totals=FALSE, legend = TRUE, vli
ne = FALSE,[] 
[3692]
[3693]
[3694]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 8277--8277
 []  \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, dosum, ...
)[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 8280--8280
 []  \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, ...)[] 
[3695]
[3696]
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 []    \T1/pcr/m/n/10 type=c(\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 right\TS1/pcr/m/n/
10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 left\TS1/pcr/m/n/10 '\T1/p
cr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval\TS1/pcr/m/n/10 '\T1/pcr/m/
n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 counting\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 
, \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval2\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \T
S1/pcr/m/n/10 '\T1/pcr/m/n/10 mstate\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ),[] 
[3697]
[3698]
[3699]
Underfull \hbox (badness 1253) in paragraph at lines 8750--8753
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 median[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10
 quantile []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 meth-ods 
first con-struct a sur-vival curve us-ing
[3700]
[3701]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 8889--8889
 []\T1/pcr/m/n/10 survcheck(formula, data, subset, na.action, id, istate, istat
e0="(s0)", 
[3702]
[3703]
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 []\T1/pcr/m/n/10 survcondense(formula, data, subset, weights, na.action= na.pa
ss, id, 
[3704]
[3705]
[3706]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 9221--9221
 []\T1/pcr/m/n/9 check <- coxph(Surv(time, status) ~ factor(pat.karno) + strata
(inst), lung)[] 
[3707]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 9227--9227
 []                  \T1/pcr/m/n/9 rmap= list(age=(accept.dt - birth.dt), sex=1
, year=accept.dt),[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 9252--9252
 []        \T1/pcr/m/n/10 method=c("ederer", "hakulinen", "conditional", "indiv
idual.h",[] 
Underfull \hbox (badness 1038) in paragraph at lines 9294--9300
[]\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre
-dicted sur-vival
[3708]
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 []                      \T1/pcr/m/n/10 rmap = list(year=entry.dt, age=(birth.d
t-entry.dt)),[] 
[3709]
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 []\T1/pcr/m/n/9 summary(fit1, times=1:10*182.5, scale=365) #expected survival 
by 1/2 years[] 
[3710]
[3711]
[3712]
Underfull \hbox (badness 10000) in paragraph at lines 9652--9657
[][][]\T1/pcr/m/n/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 survfit.object[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.survfit[][][][]\T1/ptm/m/n/10 
,
[3713]
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 []        \T1/pcr/m/n/10 se.fit=TRUE, conf.int=.95, individual=FALSE, stype=2,
 ctype,[] 
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 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
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 []        \T1/pcr/m/n/10 se.fit=FALSE, conf.int=.95, individual=FALSE, stype=2
, ctype,[] 
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 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
[3714]
[3715]
[3716]
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 []        \T1/pcr/m/n/10 stype=1, ctype=1, id, cluster, robust, istate, timefi
x=TRUE,[] 
[3717]
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[]\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio
n at the
[3718]
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\T1/pcr/m/n/10 ctype=1[]\T1/ptm/m/n/10 , "fleming-harrington" which is equiv-a-
lent to []\T1/pcr/m/n/10 stype=2,
[3719]
[3720]
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 []\T1/pcr/m/n/9 #  There are no interval censored subjects, only left-censored
 (status=3),[] 
[3721]
[3722]
[3723]
[3724]
[3725]
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 []\T1/pcr/m/n/10 survfitcoxph.fit(y, x, wt, x2, risk, newrisk, strata, se.fit,
 survtype, 
[3726]
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[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
[3727]
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 []\T1/pcr/m/n/10 survConcordance(formula, data, weights, subset, na.action) # 
use concordance 
[3728]
[3729]
Underfull \hbox (badness 2035) in paragraph at lines 10925--10932
\T1/ptm/m/n/10 it is as-sumed to name an el-e-ment from [][][]\T1/pcr/m/n/10 su
rvreg.distributions[][][][]\T1/ptm/m/n/10 .
Underfull \hbox (badness 10000) in paragraph at lines 10925--10932
\T1/ptm/m/n/10 These in-clude []\T1/pcr/m/n/10 "weibull"[]\T1/ptm/m/n/10 , []\T
1/pcr/m/n/10 "exponential"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "gaussian"[]\T1/p
tm/m/n/10 ,
Underfull \hbox (badness 1297) in paragraph at lines 10925--10932
[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 ,[]\T1/pcr/m/n/10 "lognormal" []\T1
/ptm/m/n/10 and []\T1/pcr/m/n/10 "loglogistic"[]\T1/ptm/m/n/10 . Oth-er-wise, i
t is
[3730]
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 []\T1/pcr/m/n/9 # There are multiple ways to parameterize a Weibull distributi
on. The survreg[] 
[3731]
[3732]
[3733]
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 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3734]
[3735]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11304--11304
 []                            \T1/pcr/m/n/9 temp/pi, -2 *x*temp, 2*temp^2*(4*x
^2*temp -1))[] 
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 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3736]
[3737]
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 []\T1/pcr/m/n/9 pfit2 <- pyears(Surv(years, death) ~ fgrp + agegrp, scale =100
0, data=test)[] 
[3738]
[3739]
[3740]
[3741]
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 []\T1/pcr/m/n/9 # The first data set contains data on 312 subjects in a clinic
al trial plus[] 
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 []\T1/pcr/m/n/9 # 106 that agreed to be followed off protocol, the second data
 set has data[] 
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 []               \T1/pcr/m/n/9 protime = tdc(day, protime), alk.phos = tdc(day
, alk.phos))[] 
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 []\T1/pcr/m/n/9 fit <- coxph(Surv(tstart, tstop, endpt==2) ~ protime + log(bil
i), data=pbc2)[] 
[3742]
[3743]
[3744]
[3745]
[3746]
[3747]
[3748]
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 []\T1/pcr/m/n/10 levels, test = c("global", "trend", "pairwise"), predict = "l
inear",[] 
[3749]
[3750]
[3751])
[3752]
No file fullrefman.ind.
(./fullrefman.aux)
Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.
 )
(see the transcript file for additional information)
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Chapter 1.
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[]\T1/ptm/m/n/10 the small-est pos-i-tive floating-point num-ber []\T1/pcr/m/n/
10 x []\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 + x != 1[]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 It equals []\T1/pcr/m/n/10 double.base ^ ulp.digits []\T1/ptm/m/
n/10 if ei-ther []\T1/pcr/m/n/10 double.base []\T1/ptm/m/n/10 is
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\T1/ptm/m/n/10 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0; oth
-er-wise, it is []\T1/pcr/m/n/10 (double.base ^
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/pcr/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It
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\T1/ptm/m/n/10 equals []\T1/pcr/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/pcr/m/n/10 double.base
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[]\T1/ptm/m/n/10 is 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/pcr/m/n/10 (double.base
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\T1/pcr/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/p
cr/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
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[]\T1/ptm/m/n/10 the num-ber of \T1/ptm/m/it/10 bytes \T1/ptm/m/n/10 in the C [
]\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 type: a 64-bit []\T1/pcr/m/n/10 time_t 
[]\T1/ptm/m/n/10 (value
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[]\T1/pcr/m/n/10 8[]\T1/ptm/m/n/10 ) is much pre-ferred these days. Note that t
his is the type used by
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[]\T1/ptm/m/n/10 introduced in \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.0.0. When [][]
[]\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 is
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[]\T1/pcr/m/n/10 *.exponent[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 *.min.exp[]\T1/p
tm/m/n/10 , and []\T1/pcr/m/n/10 *.max.exp[]\T1/ptm/m/n/10 , com-puted en-tirel
y anal-o-gously to their
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[]\T1/ptm/m/n/10 Note that it is le-gal for a plat-form to have a `[]\T1/pcr/m/
n/10 long double[]\T1/ptm/m/n/10 ' C type which is
Underfull \hbox (badness 6691) in paragraph at lines 255--260
\T1/ptm/m/n/10 iden-ti-cal to the `[]\T1/pcr/m/n/10 double[]\T1/ptm/m/n/10 ' ty
pe --- this hap-pens on ARM CPUs. In that case
Underfull \hbox (badness 1521) in paragraph at lines 255--260
[][][]\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 will be
 false but on ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 prior to 4.0.4,
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[][][]\T1/pcr/m/n/10 R.version[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 
Sys.info[][][] []\T1/ptm/m/n/10 give more de-tails about the OS. In par-tic-u-l
ar,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, v
alue = TRUE)[] 
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gnore.case = TRUE)[] 
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 []\T1/pcr/m/n/9 all.equal(tan(d45), one, tolerance = 0, scale = 1+(-2:2)/1e9) 
# "absolute"[] 
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 []\T1/pcr/m/n/9 mtext(paste("mean(all.equal(x1, x2*(1 + eps_k))) {100 x} Mean 
rel.diff.=",[] 
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 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE)# "target is 
bar, current is numeric"[] 
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 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE, check.class 
= FALSE) # TRUE[] 
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 []\T1/pcr/m/n/10 all.names(expr, functions = TRUE, max.names = -1L, unique = F
ALSE) 
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Underfull \hbox (badness 1221) in paragraph at lines 1535--1541
[]\T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion, where \T1/phv/m/n/10 R \T1/p
tm/m/n/10 uses ``floored'' in-te-ger di-vi-sion, i.e., []\T1/pcr/m/n/10 q <- x 
%/% y :=
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Underfull \hbox (badness 10000) in paragraph at lines 1623--1631
\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle
 . com / cd / E19957-[]01 / 806-[]3568 / ncg _
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 []              \T1/pcr/m/n/10 cut.names = FALSE, col.names = names(x), fix.em
pty.names = TRUE,[] 
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[]\T1/ptm/m/n/10 logical or in-te-ger; in-di-cat-ing if col-umn names with more
 than 256 (or
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 []\T1/pcr/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[]\T1/ptm/m/n/10 If [][][]\T1/pcr/m/n/10 is.object[][][](x) []\T1/ptm/m/n/10 is
 true and it has a [][][]\T1/pcr/m/n/10 class[][][] []\T1/ptm/m/n/10 for which 
an
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 []\T1/pcr/m/n/9 (now <- as.POSIXlt(Sys.time())) # the current datetime, as cla
ss "POSIXlt"[] 
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[]\T1/ptm/m/n/10 There are no re-stric-tions on the name given as []\T1/pcr/m/n
/10 x[]\T1/ptm/m/n/10 : it can be a non-syntactic name (see
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[]\T1/pcr/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/pcr/m/n/10 balancePOSIXlt(x,
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 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", nus), col = nus + 2, 
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 []\T1/pcr/m/n/9 plot(range(x0), c(1e-40, 1), log = "xy", xlab = "x", ylab = ""
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ale") ; axis(2, at=1)[] 
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 []\T1/pcr/m/n/9 plot(range(x0), 10^c(-100, 80), log = "xy", xlab = "x", ylab =
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 []     \T1/pcr/m/n/9 main = "Bessel Functions  K_nu(x)  near 0\n log - log  sc
ale") ; axis(2, at=1)[] 
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 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", paste(nus, nus + 0.5,
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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 []\T1/pcr/m/n/9 L <- as.list(E <- setNames( , c("if", "for", "while", "repeat"
, "function",[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 4684--4684
 []                                  \T1/pcr/m/n/9 "(", "{", "[",  "<-", "<<-",
 "->", "=")))[] 
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 []\T1/pcr/m/n/9 for(i in seq_along(L)) L[[i]] <- call(E[[i]]) # instead of lap
ply(E, call) ..[] 
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 []\T1/pcr/m/n/9 list_ <- function (...) \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 names<-
\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 (list(...), vapply(sys.call()[-1L], as.character
, ""))[] 
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 []\T1/pcr/m/n/9 (Tab <- noquote(sapply(list_(is.call, typeof, class, mode), \(
F) sapply(L, F))))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the name of a C func-tion, or an 
ob-ject
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\T1/ptm/m/n/10 of class []\T1/pcr/m/n/10 "[][]NativeSymbolInfo[][][]"[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 "[][]RegisteredNativeSymbol[][][]" []\T1/ptm/m/n/10 o
r
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 []             \T1/pcr/m/n/10 Xchk = any(nas %in% c("X11", "jpeg", "png", "tif
f")))[] 
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[]\T1/ptm/m/n/10 is ICU avail-able for col-la-tion? See the help on [][]Com-par
-i-son[][][] and
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 []\T1/pcr/m/n/9 cat(paste(letters, 100* 1:26), fill = TRUE, labels = paste0("{
", 1:10, "}:"))[] 
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[]\T1/ptm/m/n/10 (generalized) vec-tors or ma-tri-ces. These can be given as na
med ar-gu-
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[]\T1/ptm/m/n/10 (only for data frame method:) log-i-cal in-di-cat-ing if uniqu
e and valid
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 []\T1/pcr/m/n/9 rbind(1:4, c = 2, "a++" = 10, dd, deparse.level = 1) # 3 rowna
mes (default)[] 
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 []\T1/pcr/m/n/9 as.character(list(A = "Abc", xy = c("x", "y"))) # "Abc"  "c(\"
x\", \"y\")"[] 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[]\T1/ptm/m/n/10 When a generic func-tion []\T1/pcr/m/n/10 fun []\T1/ptm/m/n/10
 is ap-plied to an ob-ject with class at-tribute []\T1/pcr/m/n/10 c("first",
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[]\T1/ptm/m/n/10 Collation of char-ac-ter strings is a com-plex topic. For an i
n-tro-duc-tion see [][]$\T1/pcr/m/n/10 https : / /
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 []\T1/pcr/m/n/9 stopifnot(identical(as.complex(NA_real_), NA_real_ + 0i)) # ha
s always been true[] 
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 []\T1/pcr/m/n/9 NAs <- vapply(list(NA, NA_integer_, NA_real_, NA_character_, N
A_complex_),[] 
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 []\T1/pcr/m/n/9 ## The exact result of this *depends* on the platform, compile
r, math-library:[] 
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 []\T1/pcr/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
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[]\T1/ptm/m/n/10 User in-ter-rupts sig-nal a con-di-tion of class []\T1/pcr/m/n
/10 interrupt []\T1/ptm/m/n/10 that in-her-its di-rectly from class
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[]\T1/ptm/m/n/10 Restarts are used for es-tab-lish-ing re-cov-ery pro-to-cols. 
They can be es-tab-lished us-ing
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[]\T1/ptm/m/n/10 One ad-di-tional field that can be spec-i-fied for a restart i
s []\T1/pcr/m/n/10 interactive[]\T1/ptm/m/n/10 . This should
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 []\T1/pcr/m/n/10 unz(description, filename, open = "", encoding = getOption("e
ncoding"))[] 
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[]\T1/ptm/m/n/10 character string, par-tially matched to []\T1/pcr/m/n/10 c("de
fault", "internal",
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[]\T1/pcr/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 unz[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 socketConnection[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 It may be pos-si-ble to de-duce the cur-rent na-tive en-cod-in
g from
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[]\T1/pcr/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/pcr/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/pcr/m/n/10 "r" []\T1/ptm/m/n
/10 only. This
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\T1/ptm/m/n/10 reads the X11 pri-mary se-lec-tion (see [][]$\T1/pcr/m/n/10 http
s : / / specifications . freedesktop .
Underfull \hbox (badness 1735) in paragraph at lines 7730--7737
[]\T1/pcr/m/n/10 "X11_primary" []\T1/ptm/m/n/10 and the sec-ondary se-lec-tion 
as []\T1/pcr/m/n/10 "X11_secondary"[]\T1/ptm/m/n/10 . On most sys-
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 []\T1/pcr/m/n/9 A <- read.table(con <- file("students", encoding = "UCS-2LE"))
; close(con)[] 
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Underfull \hbox (badness 10000) in paragraph at lines 8331--8333
[]\T1/ptm/m/n/10 The cur-rent eval-u-a-tion depth (in-clud-ing two calls for th
e call to
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 []\T1/pcr/m/n/9 curlGetHeaders("http://bugs.r-project.org")   ## this redirect
s to https://[] 
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 []\T1/pcr/m/n/9 tm <- seq(as.POSIXct("2012-06-01 06:00"), by = "6 hours", leng
th.out = 24)[] 
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[]\T1/pcr/m/n/10 data.frame []\T1/ptm/m/n/10 con-verts each of its ar-gu-ments 
to a data frame by call-ing
Underfull \hbox (badness 1975) in paragraph at lines 8840--8850
[][][]\T1/pcr/m/n/10 as.data.frame[][][](optional = TRUE)[]\T1/ptm/m/n/10 . As 
that is a generic func-tion, meth-ods can be
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 []                 \T1/pcr/m/n/9 c = seq(as.Date("2004-01-01"), by = "week", l
ength.out = 3),[] 
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Underfull \hbox (badness 10000) in paragraph at lines 9334--9346
\T1/pcr/m/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") []\T1/ptm/m
/n/10 may give []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 , and
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Underfull \hbox (badness 10000) in paragraph at lines 9900--9904
[]\T1/pcr/m/n/10 .Defunct []\T1/ptm/m/n/10 is called from de-funct func-tions. 
Func-tions should be listed in
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 []\T1/pcr/m/n/9 ### Promises in an environment [for advanced users]:  --------
-------------[] 
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 []\T1/pcr/m/n/9 e <- (function(x, y = 1, z) environment())(cos, "y", {cat(" HO
!\n"); pi+2})[] 
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 []        \T1/pcr/m/n/10 backtick = mode(expr) %in% c("call", "expression", "(
", "function"),[] 
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 []        \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "sh
owAttributes"),[] 
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[]\T1/pcr/m/n/10 ..deparseOpts []\T1/ptm/m/n/10 is the [][][]\T1/pcr/m/n/10 cha
racter[][][] []\T1/ptm/m/n/10 vec-tor of pos-si-ble de-pars-ing op-tions used b
y
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[]\T1/ptm/m/n/10 Surround un-eval-u-ated ex-pres-sions, but not [][][]\T1/pcr/m
/n/10 formula[][][][]\T1/ptm/m/n/10 s, with
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[]\T1/ptm/m/n/10 a nu-meric value. The mod-u-lus (ab-so-lute value) of the de-t
er-mi-nant if
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 []    \T1/pcr/m/n/10 z <- as.POSIXct(c("2016-12-31 23:59:59", "2017-01-01 00:0
0:01"))[] 
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Underfull \hbox (badness 1917) in paragraph at lines 11029--11034
[]\T1/pcr/m/n/10 provideDimnames(x) []\T1/ptm/m/n/10 pro-vides []\T1/pcr/m/n/10
 dimnames []\T1/ptm/m/n/10 where ``miss-ing'', such that its re-sult has
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 []\T1/pcr/m/n/9 strd(provideDimnames(N, base= list(letters[-(1:9)], tail(LETTE
RS)))) # recycling[] 
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 []\T1/pcr/m/n/9 strd(provideDimnames(A, base= list(c("AA","BB")))) # recycling
 on both levels[] 
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[]\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of []\
T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . Cur-rently this is only used by
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 []\T1/pcr/m/n/9 ## From R 4.1.0 to 4.1.2, ...names() sometimes did not match n
ames(list(...));[] 
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 []\T1/pcr/m/n/9 chk.n2 <- function(...) stopifnot(identical(print(...names()),
 names(list(...))))[] 
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ 754-[]19
85$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
Underfull \hbox (badness 10000) in paragraph at lines 11410--11415
\T1/pcr/m/n/10 org / wiki / IEEE _ 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr
/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _
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\T1/pcr/m/n/10 754-[]2019$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
pcr/m/n/10 https :
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 []     \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "showA
ttributes"))[] 
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 []\T1/pcr/m/n/9 ## Write an ASCII version of the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 base\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 function mean() to our temp file, ..[] 
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 []\T1/pcr/m/n/9 drop(1:3 %*% 2:4)  # scalar product - w/o drop(.), would retur
n 1x1 matrix[] 
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 []\T1/pcr/m/n/9 aq <- transform(airquality, Month = factor(Month, labels = mon
th.abb[5:9])) 
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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
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[]\T1/pcr/m/n/10 duplicated(x, fromLast = TRUE) []\T1/ptm/m/n/10 is equiv-a-len
t to but faster than
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[]\T1/ptm/m/n/10 Do not use []\T1/pcr/m/n/10 dyn.unload []\T1/ptm/m/n/10 on a D
LL loaded by [][][]\T1/pcr/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 : use
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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 []\T1/pcr/m/n/9 Encoding(x.) # "unknown" (UTF-8 loc.) | "latin1" (8859-1/CP-12
52 loc.) | ....[] 
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[]\T1/ptm/m/n/10 The path to the de-fault browser. Used to set the de-fault val
ue of
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[]\T1/ptm/m/n/10 Optional. The path to Ghostscript, used by [][][]\T1/pcr/m/n/1
0 dev2bitmap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bitmap[][][] []\T1/pt
m/m/n/10 and
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[]\T1/ptm/m/n/10 The path to HTML []\T1/pcr/m/n/10 tidy[]\T1/ptm/m/n/10 . Used 
by []\T1/pcr/m/n/10 R CMD check []\T1/ptm/m/n/10 if
Underfull \hbox (badness 10000) in paragraph at lines 12900--12902
[]\T1/ptm/m/n/10 (and more). Op-tional. Set-tings for
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[]\T1/ptm/m/n/10 a frame in the call-ing list. Equiv-a-lent to giv-ing []\T1/pc
r/m/n/10 where []\T1/ptm/m/n/10 as
Underfull \hbox (badness 5970) in paragraph at lines 13193--13195
[]\T1/pcr/m/n/10 get0(): []\T1/ptm/m/n/10 The object---as from [][][]\T1/pcr/m/
n/10 get[][][](x, *)[]\T1/ptm/m/n/10 --- if []\T1/pcr/m/n/10 exists(x, *) []\T1
/ptm/m/n/10 is true, oth-er-wise
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 []\T1/pcr/m/n/9 ## "avector" := vector that keeps attributes.   Could provide 
a constructor[] 
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/pcr
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/pcr/m/n/10 fsep =
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[]\T1/ptm/m/n/10 logical: should file dates be pre-served where pos-si-ble? See
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 ,
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
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 []                     \T1/pcr/m/n/9 # |--> (TRUE,FALSE) : ok for A but not B 
as it exists already[] 
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 []\T1/pcr/m/n/10 dir.create(path, showWarnings = TRUE, recursive = FALSE, mode
 = "0777")[] 
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 unlink[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 basename[][][][]\T1/
ptm/m/n/10 ,
Overfull \hbox (9.78043pt too wide) in paragraph at lines 15360--15360
 []\T1/pcr/m/n/9 f <- list.files(".", all.files = TRUE, full.names = TRUE, recu
rsive = TRUE)[] 
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[]\T1/pcr/m/n/10 packageNotFoundError []\T1/ptm/m/n/10 cre-ates an er-ror con-d
i-tion ob-ject of class
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 []\T1/pcr/m/n/9 ## will not give an error, maybe a warning about *all* locatio
ns it is found:[] 
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 []\T1/pcr/m/n/10 findInterval(x, vec, rightmost.closed = FALSE, all.inside = F
ALSE, 
Underfull \hbox (badness 3965) in paragraph at lines 15504--15508
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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 []       \T1/pcr/m/n/10 .C(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING) 
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 [] \T1/pcr/m/n/10 .Fortran(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING)[] 
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 []\T1/pcr/m/n/9 ## formals returns a pairlist. Arguments with no default have 
type symbol (aka name).[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 15914--15914
 []\T1/pcr/m/n/9 ## formals returns NULL for primitive functions.  Use it in co
mbination with[] 
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[]\T1/ptm/m/n/10 either a log-i-cal spec-i-fy-ing whether el-e-ments of a real 
or com-plex vec-
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\T1/ptm/m/n/10 tor should be en-coded in sci-en-tific for-mat, or an in-te-ger 
penalty (see
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[]\T1/pcr/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 6944) in paragraph at lines 16095--16098
[][][]\T1/pcr/m/n/10 formatC[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 paste
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 sprintf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
rint[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 prettyNum[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 toString[][][][]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 z <- list(a = letters[1:3], b = (-pi+0i)^((-2:2)/2), c = c(1,1
0,100,1000),[] 
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[]\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 is used for ``pret-ti-fy-ing'' (p
os-si-bly for-mat-ted) num-bers, also in
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 []          \T1/pcr/m/n/10 decimal.mark = getOption("OutDec"), input.d.mark = 
decimal.mark,[] 
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 []\T1/pcr/m/n/10 .format.zeros(x, zero.print, nx = suppressWarnings(as.numeric
(x)),[] 
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/pcr/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
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[]\T1/pcr/m/n/10 "f" []\T1/ptm/m/n/10 gives num-bers in the usual []\T1/pcr/m/n
/10 xxx.xxx []\T1/ptm/m/n/10 for-mat; []\T1/pcr/m/n/10 "e" []\T1/ptm/m/n/10 and
 []\T1/pcr/m/n/10 "E" []\T1/ptm/m/n/10 give
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[]\T1/ptm/m/n/10 This works via []\T1/pcr/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/pcr/m/n/10 .format.zeros(*,
Underfull \hbox (badness 10000) in paragraph at lines 16425--16430
[]\T1/ptm/m/n/10 For num-bers, []\T1/pcr/m/n/10 formatC() []\T1/ptm/m/n/10 call
s []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 when needed which it-self calls
Underfull \hbox (badness 2426) in paragraph at lines 16431--16433
[]\T1/ptm/m/n/10 If you set []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 it over-ri
des the set-ting of []\T1/pcr/m/n/10 mode[]\T1/ptm/m/n/10 , so []\T1/pcr/m/n/10
 formatC(123.45, mode =
Underfull \hbox (badness 10000) in paragraph at lines 16442--16450
[]\T1/pcr/m/n/10 prettyNum []\T1/ptm/m/n/10 is the util-ity func-tion for pret-
ti-fy-ing []\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 x []\T1/ptm/m/n
/10 can be com-plex (or
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 16549--16549
 []\T1/pcr/m/n/9 fc <- formatC(1.234 + 10^(0:8), format = "fg", width = 11, big
.mark = "\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ")[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []\T1/pcr/m/n/9 doLC <- FALSE # <= R warns, so change to TRUE manually if you 
want see the effect[] 
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 []\T1/pcr/m/n/10 Reduce(f, x, init, right = FALSE, accumulate = FALSE, simplif
y = TRUE) 
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 17417--17417
 []\T1/pcr/m/n/9 utils::tail(getLoadedDLLs(), 2) # the last 2 loaded ones, stil
l a DLLInfoList[] 
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Underfull \hbox (badness 2418) in paragraph at lines 17526--17530
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/pcr/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
Underfull \hbox (badness 6510) in paragraph at lines 17533--17536
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 name []\T1/ptm/m/n/10 con-tains only one s
ym-bol name and []\T1/pcr/m/n/10 unlist []\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 TR
UE[]\T1/ptm/m/n/10 , then the sin-gle
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[][][]\T1/pcr/m/n/10 getDLLRegisteredRoutines[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 is.loaded[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .C[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Fortran[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 .External[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Call[][][][]
\T1/ptm/m/n/10 ,
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 17718--17718
 []\T1/pcr/m/n/9 ## Not run: ## for translation, those strings should appear in
 R-pkg.pot as[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 17739--17739
 []\T1/pcr/m/n/9 if(is.na(thisLang) || !nzchar(thisLang)) thisLang <- "en" # "f
actory" default[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 17742--17742
 []\T1/pcr/m/n/9 gettext(enT, domain="R-stats")# "leeres Modell angegeben" (if 
translation works)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []\T1/pcr/m/n/9 ## Here, we reset to the *original* setting before the full ex
ample started:[] 
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 17909--17909
 []\T1/pcr/m/n/10 grep(pattern, x, ignore.case = FALSE, perl = FALSE, value = F
ALSE, 
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Underfull \hbox (badness 1867) in paragraph at lines 17937--17944
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 18255--18255
 []  \T1/pcr/m/n/9 nms <- nms[is.na(match(nms, c("F","T")))] # <-- work around 
"checking hack"[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 18284--18284
 []\T1/pcr/m/n/9 name.rex <- "(?<first>[[:upper:]][[:lower:]]+) (?<last>[[:uppe
r:]][[:lower:]]+)"[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 18340--18340
 []        \T1/pcr/m/n/10 value = FALSE, fixed = FALSE, all = FALSE, invert = F
ALSE)[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 18715--18715
 []\T1/pcr/m/n/9 (ii <- grouping(x <- c(1, 1, 3:1, 1:4, 3), y <- c(9, 9:1), z <
- c(2, 1:9))) 
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 18780--18780
 []\T1/pcr/m/n/9 z <- gzcon(url("https://www.stats.ox.ac.uk/pub/datasets/csb/ch
12.dat.gz"))[] 
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 18991--18991
 []\T1/pcr/m/n/10 iconv(x, from = "", to = "", sub = NA, mark = TRUE, toRaw = F
ALSE) 
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Underfull \hbox (badness 1360) in paragraph at lines 19152--19158
[]\T1/ptm/m/n/10 The most portable name for the ISO 8859-15 en-cod-ing, com-mon
ly known as `Latin 9',
Underfull \hbox (badness 1953) in paragraph at lines 19152--19158
\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 "iso885915"[]\T1/ptm/m/n/10 : most plat-form
s sup-port both []\T1/pcr/m/n/10 "latin-9" []\T1/ptm/m/n/10 and[]\T1/pcr/m/n/10
 "latin9" []\T1/ptm/m/n/10 but GNU
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Underfull \hbox (badness 1163) in paragraph at lines 19374--19376
[]\T1/ptm/m/n/10 The ICU user guide chap-ter on col-la-tion ([][]$\T1/pcr/m/n/1
0 https : / / unicode-[]org . github . io / icu /
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19382--19382
 []\T1/pcr/m/n/9 ## As we don\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 t know the current s
ettings, we can only reset to the default.[] 
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Overfull \hbox (24.78088pt too wide) in paragraph at lines 19412--19412
 []\T1/pcr/m/n/10 identical(x, y, num.eq = TRUE, single.NA = TRUE, attrib.as.se
t = TRUE, 
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Overfull \hbox (30.78088pt too wide) in paragraph at lines 19506--19506
 []              \T1/pcr/m/n/10 num.eq = FALSE, single.NA = FALSE, attrib.as.se
t = FALSE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 19507--19507
 []              \T1/pcr/m/n/10 ignore.bytecode = FALSE, ignore.environment = F
ALSE,[] 
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 []\T1/pcr/m/n/9 ### For functions ("closure"s): ------------------------------
----------------[] 
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 []\T1/pcr/m/n/9 identical(f, g)                        # TRUE, as bytecode is 
ignored by default[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 19569--19569
 []\T1/pcr/m/n/9 ## GLM families contain several functions, some of which share
 an environment:[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19575--19575
 []\T1/pcr/m/n/9 op <- options(keep.source = TRUE) # and so, these have differi
ng "srcref" :[] 
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 []\T1/pcr/m/n/9 ## This is a (not atypical) case where it is better *not* to u
se ifelse(),[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19710--19710
 []\T1/pcr/m/n/9 ## example of different return modes (and \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 test\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 alone determining length):[] 
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Underfull \hbox (badness 10000) in paragraph at lines 19915--19917
[]\T1/ptm/m/n/10 how some er-rors are han-dled and re-ported, e.g. see [][][]\T
1/pcr/m/n/10 stop[][][] []\T1/ptm/m/n/10 and
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Underfull \hbox (badness 2057) in paragraph at lines 20018--20044
[][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 20216--20224
\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle
 . com / cd / E19957-[]01 / 806-[]3568 / ncg _
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Underfull \hbox (badness 4699) in paragraph at lines 20416--20419
[]\T1/pcr/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/10 ISOdate(year, month, day, hour = 12, min = 0, sec = 0, tz = "
GMT")[] 
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Underfull \hbox (badness 4739) in paragraph at lines 20683--20685
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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 []\T1/pcr/m/n/9 isSymmetric(D3)                         # FALSE (as row and co
lumn names differ)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 20733--20733
 []\T1/pcr/m/n/9 isSymmetric(D3, check.attributes=FALSE) # TRUE  (as names are 
not checked)[] 
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Overfull \hbox (48.78088pt too wide) in paragraph at lines 20848--20848
 []\T1/pcr/m/n/10 .kappa_tri(z, exact = FALSE, LINPACK = TRUE, norm = NULL, upl
o = "U", ...)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 20850--20850
 []\T1/pcr/m/n/10 rcond(x, norm = c("O","I","1"), triangular = FALSE, uplo = "U
", ...)[] 
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Underfull \hbox (badness 2961) in paragraph at lines 20934--20937
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
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 []\T1/pcr/m/n/9 ## Moore-Penrose inverse { ~= MASS::ginv(); differing tol (val
ue & meaning)}:[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 21012--21012
 []\T1/pcr/m/n/9 try( kappa(m76, exact=TRUE, norm="1") )# error in  solve().. m
ust be square[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 21014--21014
 []\T1/pcr/m/n/9 ## ==> use pseudo-inverse instead of solve() for rectangular {
and norm != "2"}:[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 21033--21033
 []    \T1/pcr/m/n/9 kappa(A, exact=TRUE, norm = "1", inv_z = solve(A, tol = 1e
-19)) ## 5.22057e16[] 
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Underfull \hbox (badness 1975) in paragraph at lines 21435--21438
[]\T1/ptm/m/n/10 The value of the in-ter-nal eval-u-a-tion of a top-level \T1/p
hv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sion is al-ways as-signed to
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[]\T1/ptm/m/n/10 In late 2017 a []\T1/pcr/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/pcr/m/n/10 libcurl []\T
1/ptm/m/n/10 and
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Underfull \hbox (badness 10000) in paragraph at lines 21865--21872
[][][]$\T1/pcr/m/n/10 https : / / curl . se / docs / sslcerts . html$[][] \T1/p
tm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / curl . se / docs /
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[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/pcr/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2970) in paragraph at lines 21996--21999
[]\T1/pcr/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/pcr/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a
Underfull \hbox (badness 2951) in paragraph at lines 21996--21999
\T1/ptm/m/n/10 hid-den di-rec-tory and may not be viewed by some soft-ware. It 
may be opened by
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Underfull \hbox (badness 10000) in paragraph at lines 22109--22113
[]\T1/ptm/m/n/10 To sup-press mes-sages dur-ing the load-ing of pack-ages use
Underfull \hbox (badness 1454) in paragraph at lines 22109--22113
[][][]\T1/pcr/m/n/10 suppressPackageStartupMessages[][][][]\T1/ptm/m/n/10 : thi
s will sup-press all mes-sages from \T1/phv/m/n/10 R \T1/ptm/m/n/10 it-self
Underfull \hbox (badness 1221) in paragraph at lines 22114--22121
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 is called with no
 []\T1/pcr/m/n/10 package []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 help []\T1/ptm/m
/n/10 ar-gu-ment, it lists all avail-able pack-
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[][][]\T1/pcr/m/n/10 attach[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 detach
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 search[][][][]\T1/ptm/m/n/10 , []
[][]\T1/pcr/m/n/10 objects[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 autoloa
d[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 requireNamespace[][][][]\T1/ptm/
m/n/10 ,
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[]\T1/ptm/m/n/10 Do not use [][][]\T1/pcr/m/n/10 dyn.unload[][][] []\T1/ptm/m/n
/10 on a DLL loaded by []\T1/pcr/m/n/10 library.dynam[]\T1/ptm/m/n/10 : use
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 files[][][] []\T1/ptm/
m/n/10 for many more file han-dling func-tions and
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 22805--22805
 []          \T1/pcr/m/n/9 identical(L$b, e$b)) # "$" working for environments 
as for lists[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 22816--22816
 []              \T1/pcr/m/n/9 df = data.frame(x = rnorm(20), y = rbinom(20, 1,
 prob = 0.2))),[] 
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 []\T1/pcr/m/n/9 ## This however annihilates all objects in .GlobalEnv with the
 same names ![] 
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 []\T1/pcr/m/n/9 attach("all.rda") # safer and will warn about masked objects w
/ same name in .GlobalEnv[] 
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[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-
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[]\T1/ptm/m/n/10 Almost all the out-put rou-tines used by \T1/phv/m/n/10 R \T1/
ptm/m/n/10 it-self un-der Win-dows ig-nore the set-ting of
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 []\T1/pcr/m/n/9 Sys.setlocale("LC_TIME", "de_DE.UTF-8")  # Linux, macOS, other
 Unix-alikes[] 
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 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # in C_TIME locale \T
S1/pcr/m/n/9 '\T1/pcr/m/n/9 cT\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 ; typically German
[] 
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 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # "standard" (still p
latform specific ?)[] 
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 []\T1/pcr/m/n/9 ## Not run: Sys.setlocale("LC_COLLATE", "C")   # turn off loca
le-specific sorting,[] 
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 []\T1/pcr/m/n/9 Sys.setenv("LANGUAGE" = "es") # set the language for error/war
ning messages[] 
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[][][]\T1/pcr/m/n/10 raw[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logical[]
[][] []\T1/ptm/m/n/10 or `number-like' vec-tors (i.e., of types [][][]\T1/pcr/m
/n/10 double[][][] []\T1/ptm/m/n/10 (class
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 []\T1/pcr/m/n/9 zN <- c(complex(real = NA , imaginary =  r ), complex(real =  
r , imaginary = NA ),[] 
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 []        \T1/pcr/m/n/9 complex(real =  r , imaginary = NaN), complex(real = N
aN, imaginary =  r ))[] 
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 []\T1/pcr/m/n/9 zM ##--> many "NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s" (= 1) and th
e four non-NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s (3 different ones, at 7,9,10)[] 
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 []\T1/pcr/m/n/9 match.arg(c("a", ""),  c("", NA, "bb", "abc"), several.ok=TRUE
) # |-->  "abc"[] 
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[]\T1/ptm/m/n/10 `function' on this help page means an in-ter-preted func-tion 
(also known as a `clo-sure'):
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[]\T1/ptm/m/n/10 For ma-trix \T1/ptm/m/it/10 cross \T1/ptm/m/n/10 prod-ucts, []
[][]\T1/pcr/m/n/10 crossprod[][][]() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 tcro
ssprod() []\T1/ptm/m/n/10 are typ-i-cally prefer-able.
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[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
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\T1/ptm/m/n/10 changed to al-low more (up to 3Gb). See [][]$\T1/pcr/m/n/10 http
s : / / docs . microsoft . com / en-[]gb /
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 []      \T1/pcr/m/n/10 by.x = by, by.y = by, all = FALSE, all.x = all, all.y =
 all,[] 
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[]\T1/pcr/m/n/10 anyNA(recursive = FALSE) []\T1/ptm/m/n/10 works the same way a
s []\T1/pcr/m/n/10 is.na[]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 anyNA(recursive =
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[]\T1/pcr/m/n/10 as.name []\T1/ptm/m/n/10 first co-erces its ar-gu-ment in-ter-
nally to a char-ac-ter vec-tor (so meth-ods for
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[]\T1/ptm/m/n/10 For an [][][]\T1/pcr/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list,
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\T1/ptm/m/n/10 i.e., []\T1/pcr/m/n/10 names(as.list(env, all.names = TRUE)) []\
T1/ptm/m/n/10 which are also given by [][][]\T1/pcr/m/n/10 ls[][][](env,
Underfull \hbox (badness 3148) in paragraph at lines 25988--25994
\T1/pcr/m/n/10 all.names = TRUE, sorted = FALSE)[]\T1/ptm/m/n/10 . If the en-vi
-ron-ment is used as a hash ta-ble,
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[]\T1/ptm/m/n/10 character string: par-tial match-ing to one of []\T1/pcr/m/n/1
0 c("bytes", "chars",
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[]\T1/ptm/m/n/10 optional [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/pcr/m/n/10 print()[]\T1/ptm/m/n/10 , used by
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\T1/ptm/m/n/10 tion []\T1/pcr/m/n/10 GetFinalPathNameByHandle []\T1/ptm/m/n/10 
and in case of an er-ror (such as in-suf-fi-cient per-
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[]\T1/ptm/m/n/10 Loading a names-pace should where pos-si-ble be silent, with s
tartup mes-sages given by
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[]\T1/pcr/m/n/10 .onAttach[]\T1/ptm/m/n/10 . These mes-sages (and any es-sen-ti
al ones from []\T1/pcr/m/n/10 .onLoad[]\T1/ptm/m/n/10 ) should use
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[]\T1/ptm/m/n/10 Uses of []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 with ar-gu-m
ent []\T1/pcr/m/n/10 help []\T1/ptm/m/n/10 to dis-play ba-sic in-for-ma-tion ab
out the pack-
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\T1/ptm/m/n/10 age should use []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 on the c
om-puted pack-age in-for-ma-tion ob-ject and pass this to
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 []\T1/pcr/m/n/10 attachNamespace(ns, pos = 2L, depends = NULL, exclude, includ
e.only) 
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 []              \T1/pcr/m/n/10 keep.parse.data = getOption("keep.parse.data.pk
gs"))[] 
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[]\T1/pcr/m/n/10 loadNamespace []\T1/ptm/m/n/10 does not at-tach the name space
 it loads to the search path.
Underfull \hbox (badness 1168) in paragraph at lines 26993--26999
[]\T1/pcr/m/n/10 attachNamespace []\T1/ptm/m/n/10 can be used to at-tach a fram
e con-tain-ing the ex-ported val-ues of a
Underfull \hbox (badness 10000) in paragraph at lines 27006--27008
[]\T1/pcr/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/pcr/m/n/10 pkg %in%
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 [] \T1/pcr/m/n/9 ## The string "foo" and the symbol \TS1/pcr/m/n/9 '\T1/pcr/m/
n/9 foo\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 can be used interchangably here:[] 
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[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 is.numeric []\T1/ptm/
m/n/10 re-turns []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 if its ar-gu-ment is of 
[][]mode[][][]
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\T1/ptm/m/n/10 ject as ob-tained by [][][]\T1/pcr/m/n/10 R.version[][][][]\T1/p
tm/m/n/10 . For []\T1/pcr/m/n/10 as.numeric_version []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 date ob-jects or char-ac-ter vec-tors. (Char-ac-ter vec-tors a
re con-verted by
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[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-
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Underfull \hbox (badness 3271) in paragraph at lines 28138--28141
[]\T1/ptm/m/n/10 default PDF viewer. The de-fault is set from the en-vi-ron-men
t vari-able
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Underfull \hbox (badness 3138) in paragraph at lines 28446--28452
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/pcr/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/pcr/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
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\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 1389) in paragraph at lines 28485--28487
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
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[]\T1/ptm/m/n/10 logical: should per-directory pack-age lock-ing be used by
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[]\T1/ptm/m/n/10 Used by [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
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[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/pcr/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/pcr/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The de-fault type of pack-ages to be down-loaded and in-stalle
d -- see
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[]\T1/pcr/m/n/10 "source" []\T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN 
ma-cOS
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\T1/ptm/m/n/10 build), []\T1/pcr/m/n/10 "mac.binary" []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 "both" []\T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS
Underfull \hbox (badness 10000) in paragraph at lines 28573--28579
\T1/ptm/m/n/10 builds). ([]\T1/pcr/m/n/10 "mac.binary.el-capitan"[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 "mac.binary.mavericks"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 5091) in paragraph at lines 28573--28579
[]\T1/pcr/m/n/10 "mac.binary.leopard" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "ma
c.binary.universal" []\T1/ptm/m/n/10 are no longer
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 []\T1/pcr/m/n/9 system.time(o <- sort.list(xx, method = "radix")) # 0.007 sec,
 300X faster[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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[]\T1/ptm/m/n/10 where el-e-ment []\T1/pcr/m/n/10 A[c(arrayindex.x, arrayindex.
y)] = FUN(X[arrayindex.x],
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[]\T1/pcr/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/pcr/m/n/10 parse(tex
t=s,
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 []\T1/pcr/m/n/9 tryCatch(parse(text = txt, srcfile = sf), error = function(e) 
"Syntax error.")[] 
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\T1/ptm/m/n/10 zero-length [][][]\T1/pcr/m/n/10 character[][][](0)[]\T1/ptm/m/n
/10 . Note that when []\T1/pcr/m/n/10 collapse []\T1/ptm/m/n/10 is a string,
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[][][]\T1/pcr/m/n/10 toString[][][] []\T1/ptm/m/n/10 typ-i-cally calls []\T1/pc
r/m/n/10 paste(*, collapse=", ")[]\T1/ptm/m/n/10 . String ma-nip-u-la-tion with
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 []\T1/pcr/m/n/9 ## Notice that the recycling rules make every input as long as
 the longest input.[] 
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 []\T1/pcr/m/n/9 paste("1st", "2nd", "3rd", collapse = ", ") # probably not wha
t you wanted[] 
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 []\T1/pcr/m/n/9 ## zero length arguments recycled as \TS1/cmtt/m/n/9 `\T1/pcr/
m/n/9 ""\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 -- NB: \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 {
}\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 <==> character(0)  here[] 
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 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 recycle0 = TRUE\TS1/pcr/m/n/9
 ' \T1/pcr/m/n/9 allows standard vectorized behaviour, i.e., zero-length[] 
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 []\T1/pcr/m/n/9 ##                   recycling resulting in zero-length result
 character(0):[] 
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 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- not so good!") # ->  "..
 value is  -- not .."[] 
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 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- good: empty!", recycle0=
TRUE) # -> character(0)[] 
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 []\T1/pcr/m/n/9 paste("foo", {}, "bar", collapse = "|")                  # |--
>  "foo  bar"[] 
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 []\T1/pcr/m/n/9 ## If all arguments are empty (and collapse a string),   ""  r
esults always[] 
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 []\T1/pcr/m/n/9 mtcars |> subset(cyl == 4) |> nrow()  # same as nrow(subset(mt
cars, cyl == 4))[] 
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 []\T1/pcr/m/n/9 stop() |> (function(...) {})() # stop() is not used on RHS so 
is not evaluated[] 
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[]\T1/ptm/m/n/10 All other []\T1/pcr/m/n/10 type[]\T1/ptm/m/n/10 s give a warn-
ing or an er-ror; us-ing, e.g., []\T1/pcr/m/n/10 type =
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\T1/ptm/m/n/10 i.e., strictly in-clude the bounds of []\T1/pcr/m/n/10 x[]\T1/pt
m/m/n/10 . New from \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0, al-low-ing
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[]\T1/ptm/m/n/10 This func-tion is al-most never used: []\TS1/cmtt/m/n/10 `\T1/
pcr/m/n/10 name\TS1/cmtt/m/n/10 ` []\T1/ptm/m/n/10 or, more care-fully, [][][]\
T1/pcr/m/n/10 get[][][](name, envir =
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[]\T1/ptm/m/n/10 character string (or []\T1/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/pcr/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
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[]\T1/ptm/m/n/10 Option []\T1/pcr/m/n/10 width []\T1/ptm/m/n/10 con-trols the p
rint-ing of vec-tors, ma-tri-ces and ar-rays, and op-tion
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 []\T1/pcr/m/n/9 (x <- 2^seq(-8, 30, by=1/4)) # auto-prints; by default all in 
"exponential" format[] 
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[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
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 []           \T1/pcr/m/n/9 c1 = rep(c(1,0,0), 2), c2 = rep(c(0,1,0), 2), c3 = 
rep(c(0,0,1),2))[] 
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 []\T1/pcr/m/n/9 (nn <- "\u0126\u0119\u1114\u022d\u2001\u03e2\u0954\u0f3f\u13d3
\u147b\u203c")[] 
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 []\T1/pcr/m/n/9 n2 <- "\U0126\U0119\U1114\U022d\U2001\U03e2\U0954\U0f3f\U13d3\
U147b\U203c"[] 
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 []\T1/pcr/m/n/9 ## https://cran.r-project.org/doc/manuals/r-release/R-lang.htm
l#Literal-constants[] 
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 []\T1/pcr/m/n/9 ## nul characters (for terminating strings in C) are not allow
ed (parse errors)[] 
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[]\T1/ptm/m/n/10 Do \T1/ptm/m/it/10 not \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R.v
ersion$os []\T1/ptm/m/n/10 to test the plat-form the code is run-ning on: use
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 []\T1/pcr/m/n/9 mtext(R.version.string, side = 1, line = 4, adj = 1) # a usefu
l bottom-right note[] 
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 []\T1/pcr/m/n/10 set.seed(seed, kind = NULL, normal.kind = NULL, sample.kind =
 NULL)[] 
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[]\T1/pcr/m/n/10 normal.kind []\T1/ptm/m/n/10 can be []\T1/pcr/m/n/10 "Kinderma
n-Ramage"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Buggy Kinderman-Ramage" []\T1/ptm
/m/n/10 (not
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\T1/ptm/m/n/10 uni-form pseudo-random num-ber gen-er-a-tor, \T1/ptm/m/it/10 ACM
 Trans-ac-tions on Mod-el-ing and Com-puter
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\T1/ptm/m/n/10 Now see [][]$\T1/pcr/m/n/10 http : / / www . math . sci . hirosh
ima-[]u . ac . jp / ~m-[]mat / MT / VERSIONS /
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[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
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 []     \T1/pcr/m/n/10 ties.method = c("average", "first", "last", "random", "m
ax", "min"))[] 
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[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/pcr/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
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 []\T1/pcr/m/n/9 rapply(X, function(x) x, how = "replace") -> X.; stopifnot(ide
ntical(X, X.))[] 
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 []\T1/pcr/m/n/9 rapply(X, deparse, control = "all") # passing extras. argument
 of deparse()[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "list")[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character",                      h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 rapply(E, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 ## Bit representation  [ sign | exponent | mantissa ] of doubl
e prec numbers :[] 
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 []\T1/pcr/m/n/9 bitC <- function(x) noquote(vapply(as.double(x), function(x) {
 # split one double[] 
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 []\T1/pcr/m/n/9 d2bI <- function(x) vapply(as.double(x), function(x) intToBits
(numToInts(x)), raw(64L))[] 
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 []\T1/pcr/m/n/9 d2b  <- function(x) vapply(as.double(x), function(x)          
 numToBits(x) , raw(64L))[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:
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[]\T1/ptm/m/n/10 Either an ob-ject whose mode will give the mode of the vec-tor
 to
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\T1/ptm/m/n/10 be read, or a char-ac-ter vec-tor of length one de-scrib-ing the
 mode:
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\T1/ptm/m/n/10 one of []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/pcr/m/
n/10 "double"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 "int"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/
10 ,
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 infoRDS[]\T1/ptm/m/n/10 , an \T1/phv/m/n/
10 R \T1/ptm/m/n/10 list with el-e-ments []\T1/pcr/m/n/10 version []\T1/ptm/m/n
/10 (ver-sion num-ber, cur-rently 2 or 3),
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 []\T1/pcr/m/n/9 ## or examine the object via a connection, which will be opene
d as needed.[] 
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[]\T1/pcr/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1968) in paragraph at lines 33874--33876
[]\T1/ptm/m/n/10 This help page is based on the TRE doc-u-men-ta-tion and the P
OSIX stan-dard, and the
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[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/pcr/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs /
Underfull \hbox (badness 1975) in paragraph at lines 33888--33892
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/pcr/m
/n/10 https : / / www .
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 []\T1/pcr/m/n/9 rep(1:4, each = 2, times = 3)         # length 24, 3 complete 
replications[] 
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[][][]\T1/pcr/m/n/10 TRUE[][][] [][]FALSE[][][] [][]NULL[][][] [][]Inf[][][] []
[]NaN[][][] [][]NA[][][] [][]NA_integer_[][][] [][]NA_real_[][][] [][]NA_comple
x_[][][]
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[]\T1/pcr/m/n/10 signif []\T1/ptm/m/n/10 rounds the val-ues in its first ar-gu-
ment to the spec-i-fied num-ber of \T1/ptm/m/it/10 sig-nif-i-cant
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\T1/ptm/m/n/10 dig-its. Hence, for []\T1/pcr/m/n/10 numeric x[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 signif(x, dig) []\T1/ptm/m/n/10 is the same as []\T1/pcr/m/n/
10 round(x, dig -
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"))[] 
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
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 []           \T1/pcr/m/n/10 useHash = (n > 1e+07 && !replace && is.null(prob) 
&& size <= n/2))[] 
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 []     \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, skipNul =
 FALSE)[] 
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
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 []\T1/pcr/m/n/9 cat("TITLE extra line", "2 3 5 7", "11 13 17", file = "ex.data
", sep = "\n") 
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[]\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence []\T1/pcr/
m/n/10 1, 2, ..., length(along.with)[]\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 The fifth form gen-er-ates the se-quence []\T1/pcr/m/n/10 1, 2
, ..., length(from) []\T1/ptm/m/n/10 (as if ar-gu-ment
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[]\T1/pcr/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use
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\T1/ptm/m/n/10 with []\T1/pcr/m/n/10 getConnection[]\T1/ptm/m/n/10 , cor-re-spo
nd-ing to the row names of the ta-ble re-turned by
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[]\T1/ptm/m/n/10 In Win-dows, com-mand line in-ter-pre-ta-tion is done by the a
p-pli-ca-tion as well as the
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\T1/ptm/m/n/10 shell. It may de-pend on the com-piler used: Mi-crosoft's rules 
for the C run-time
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\T1/ptm/m/n/10 are given at [][]$\T1/pcr/m/n/10 https : / / learn . microsoft .
 com / en-[]us / cpp / c-[]language /
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\T1/pcr/m/n/10 parsing-[]c-[]command-[]line-[]arguments ? view = msvc-[]160$[][
]\T1/ptm/m/n/10 . It may de-pend on the
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Overfull \hbox (66.78088pt too wide) in paragraph at lines 37371--37371
 []         \T1/pcr/m/n/10 method = c("auto", "shell", "quick", "radix"), index
.return = FALSE)[] 
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 []\T1/pcr/m/n/9 sort_by.data.frame(mtcars, ~ list(am, -mpg)) |> subset(select 
= c(am, mpg))[] 
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 []              \T1/pcr/m/n/10 print. = TRUE, echo = TRUE, max.deparse.length 
= Inf,[] 
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 []              \T1/pcr/m/n/10 deparseCtrl = c("keepInteger", "showAttributes"
, "keepNA"),[] 
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 vec-tor, passed as []\T1/
pcr/m/n/10 control []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 deparse[][][]()[]\T
1/ptm/m/n/10 , see also
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[][][]\T1/pcr/m/n/10 .deparseOpts[][][][]\T1/ptm/m/n/10 . In \T1/phv/m/n/10 R \
T1/ptm/m/n/10 ver-sion <= 3.3.x, this was hard-coded to
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 []\T1/pcr/m/n/9 ## (all should look "as if on top level", e.g. non-assignments
 should print:)[] 
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 []\T1/pcr/m/n/9 ### Calculate \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 z-scores\TS1/pcr/m
/n/9 ' \T1/pcr/m/n/9 by group (standardize to mean zero, variance one)[] 
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 []\T1/pcr/m/n/9 ## Notice that assignment form is not used since a variable is
 being added[] 
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[][][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions /
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 []\T1/pcr/m/n/10 srcfile(filename, encoding = getOption("encoding"), Enc = "un
known") 
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 []\T1/pcr/m/n/10 srcfilecopy(filename, lines, timestamp = Sys.time(), isFile =
 FALSE)[] 
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 []\T1/pcr/m/n/9 startsWith(search(), "package:") # typically at least two FALS
E, nowadays often three 
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[]\T1/ptm/m/n/10 A func-tion []\T1/pcr/m/n/10 .First []\T1/ptm/m/n/10 (and [][]
[]\T1/pcr/m/n/10 .Last[][][][]\T1/ptm/m/n/10 ) can be de-fined in ap-pro-pri-at
e `\T1/pcr/m/n/10 .Rprofile\T1/ptm/m/n/10 ' or
Underfull \hbox (badness 2635) in paragraph at lines 39104--39114
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' files or have been
 saved in `\T1/pcr/m/n/10 .RData\T1/ptm/m/n/10 '. If you want a dif-fer-ent
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\T1/ptm/m/n/10 set of pack-ages than the de-fault ones when you start, in-sert 
a call to [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 in the
Underfull \hbox (badness 1231) in paragraph at lines 39104--39114
\T1/pcr/m/n/10 = character()) []\T1/ptm/m/n/10 will at-tach no ex-tra pack-ages
 on startup (only the \T1/ptm/b/n/10 base \T1/ptm/m/n/10 pack-age) (or
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\T1/ptm/m/n/10 set []\T1/pcr/m/n/10 R_DEFAULT_PACKAGES=NULL []\T1/ptm/m/n/10 as
 an en-vi-ron-ment vari-able be-fore run-ning \T1/phv/m/n/10 R\T1/ptm/m/n/10 ).
 Us-ing
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[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/pcr/m/n/10 Renviron.site\T1/ptm/m/n/10 '
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\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
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\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/pcr/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be
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[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
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\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
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\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
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 []\T1/pcr/m/n/9 # Variable expansion in double quotes, string literals with ba
ckslashes in[] 
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[]\T1/ptm/m/n/10 The de-fault han-dler stores the er-ror mes-sage in a buffer; 
it can be re-trieved by
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[]\T1/pcr/m/n/10 geterrmessage()[]\T1/ptm/m/n/10 . It also stores a trace of th
e call stack that can be re-trieved by
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[]\T1/ptm/m/n/10 alternative to []\T1/pcr/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/pcr/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
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 [] \T1/pcr/m/n/10 assert <- function(exprs) eval.parent(substitute(stopifnot(e
xprs = exprs))) 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(pi, 3.141593),  2 < 2, (1:10 < 12), "a" < 
"b") |> try()[] 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(rep(list(pi),4), list(3.1, 3.14, 3.141, 3.
1415))) |> try()[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 '   \T1/pcr/m/n/9 {Yes, learn how to use do.c
all(substitute, ...) in a powerful manner !!}[] 
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 []\T1/pcr/m/n/9 bdy        <- do.call(substitute, list(bdy,   list(stopifnot =
 quote(warnifnot))))[] 
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 []\T1/pcr/m/n/9 bdy[[N-1]] <- do.call(substitute, list(bdy[[N-1]], list(stop =
 quote(warning))))[] 
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[]\T1/ptm/m/n/10 integer de-ter-min-ing the []\T1/pcr/m/n/10 format()[]\T1/ptm/
m/n/10 ing of sec-onds when needed. Note
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 []\T1/pcr/m/n/9 z3 # prints without fractional seconds by default, digits.sec 
= NULL ("= 0")[] 
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 []\T1/pcr/m/n/9 format(s1 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 19
78-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 day
\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ,   len =  7), "%a")[] 
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 []\T1/pcr/m/n/9 format(s2 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 20
00-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 mon
th\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 12), "%b")[] 
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 []            \T1/pcr/m/n/10 add the string to the left of the match to the ou
tput.[] 
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 []        \T1/pcr/m/n/10 exdent = 0, prefix = "", simplify = TRUE, initial = p
refix)[] 
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 []\T1/pcr/m/n/9 x <- paste(readLines(file.path(R.home("doc"), "THANKS")), coll
apse = "\n")[] 
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Overfull \hbox (52.98038pt too wide) in paragraph at lines 40878--40878
 []\T1/pcr/m/n/9 ## In fact, you can pass vectors into several arguments, and e
verything gets added.[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 40881--40881
 []\T1/pcr/m/n/9 ## If there are missing values, the sum is unknown, i.e., also
 missing, ....[] 
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Underfull \hbox (badness 10000) in paragraph at lines 40932--40939
[]\T1/ptm/m/n/10 integer, used for num-ber for-mat-ting with [][][]\T1/pcr/m/n/
10 signif[][][]() []\T1/ptm/m/n/10 (for
Underfull \hbox (badness 10000) in paragraph at lines 40932--40939
[]\T1/pcr/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][][]\T1/pcr/m/n/10 form
at[][][]() []\T1/ptm/m/n/10 (for []\T1/pcr/m/n/10 summary.data.frame[]\T1/ptm/m
/n/10 ).
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 40985--40985
 []\T1/pcr/m/n/9 summary(attenu, digits = 4) #-> summary.data.frame(...), defau
lt precision 
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Overfull \hbox (31.3804pt too wide) in paragraph at lines 41299--41299
 []    \T1/pcr/m/n/9 cat(ch,":", switch(EXPR = ch, a =, A = 1, b = 2:3, "Otherw
ise: last"),"\n")[] 
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 41509--41509
 []\T1/pcr/m/n/9 if(.Platform$OS.type == "unix") ## on Unix-alikes such Linux, 
macOS, FreeBSD:[] 
Underfull \hbox (badness 2293) in paragraph at lines 41539--41545
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-
Underfull \hbox (badness 1237) in paragraph at lines 41539--41545
\T1/ptm/m/n/10 tails of wild-cards ex-pan-sion, see your sys-tem's doc-u-men-ta
-tion on the []\T1/pcr/m/n/10 glob []\T1/ptm/m/n/10 sys-tem call.
Underfull \hbox (badness 4792) in paragraph at lines 41557--41562
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/pcr/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
Underfull \hbox (badness 1107) in paragraph at lines 41557--41562
[]\T1/pcr/m/n/10 Sys.glob("*.RData") []\T1/ptm/m/n/10 may or may not match `\T1
/pcr/m/n/10 .RData\T1/ptm/m/n/10 ' but will not usu-ally match
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Underfull \hbox (badness 10000) in paragraph at lines 41846--41850
[]\T1/pcr/m/n/10 sys.status() []\T1/ptm/m/n/10 re-turns a list with com-po-nent
s []\T1/pcr/m/n/10 sys.calls[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sys.parents []\
T1/ptm/m/n/10 and
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Underfull \hbox (badness 1584) in paragraph at lines 41861--41864
[]\T1/pcr/m/n/10 sys.call []\T1/ptm/m/n/10 re-turns a call, []\T1/pcr/m/n/10 sy
s.function []\T1/ptm/m/n/10 a func-tion def-i-ni-tion, and []\T1/pcr/m/n/10 sys
.frame []\T1/ptm/m/n/10 and
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Overfull \hbox (25.98041pt too wide) in paragraph at lines 41999--41999
 []\T1/pcr/m/n/9 is.symlink <- function(paths) isTRUE(nzchar(Sys.readlink(paths
), keepNA=TRUE))[] 
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Overfull \hbox (19.22812pt too wide) in paragraph at lines 42079--42079
 []\T1/pcr/m/n/9 print(Sys.setenv(R_TEST = "testit", "A+C" = 123))  # \TS1/cmtt
/m/n/9 `\T1/pcr/m/n/9 A+C\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 could also be used 
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Underfull \hbox (badness 1082) in paragraph at lines 42224--42227
[]\T1/ptm/m/n/10 logical. If []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
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Underfull \hbox (badness 10000) in paragraph at lines 42251--42253
[][][]\T1/pcr/m/n/10 source[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 lo
adNamespace[][][] []\T1/ptm/m/n/10 which is called from [][][]\T1/pcr/m/n/10 li
brary[][][](.) []\T1/ptm/m/n/10 and uses
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Underfull \hbox (badness 1038) in paragraph at lines 42418--42421
[]\T1/ptm/m/n/10 a log-i-cal (not []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 ) in-di-c
at-ing whether mes-sages writ-ten to `\T1/pcr/m/n/10 stdout\T1/ptm/m/n/10 ' or
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Underfull \hbox (badness 1442) in paragraph at lines 42802--42806
\T1/ptm/m/n/10 con-sider it to be piped or redi-rected: []\T1/pcr/m/n/10 stdout
 = TRUE []\T1/ptm/m/n/10 uses a pipe whereas []\T1/pcr/m/n/10 stdout =
[620]
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Underfull \hbox (badness 4096) in paragraph at lines 43060--43063
[]\T1/ptm/m/n/10 Use [][][]\T1/pcr/m/n/10 ftable[][][] []\T1/ptm/m/n/10 for pri
nt-ing (and more) of mul-ti-di-men-sional ta-bles. [][][]\T1/pcr/m/n/10 margin.
table[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 7888) in paragraph at lines 43175--43179
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/pcr/m/n/10 bin []\T1/ptm/m/n/10 can
 have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/pcr/
m/n/10 length(bin) >
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Overfull \hbox (63.78036pt too wide) in paragraph at lines 43437--43437
 []            \T1/pcr/m/n/9 matrix(c(1L, 2L, NA, 3L), 2, dimnames = list(c("1"
, "2"), c("A", "B")))),[] 
Overfull \hbox (30.0281pt too wide) in paragraph at lines 43439--43439
 []            \T1/pcr/m/n/9 array(list(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 2\TS1/cm
tt/m/n/9 ` \T1/pcr/m/n/9 = structure(c(2, 5.75, 9.5, 13.25, 17), names = nq),[]
 
Overfull \hbox (55.67578pt too wide) in paragraph at lines 43441--43441
 []                 \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 4\TS1/cmtt/m/n/9 ` \T1/pcr/m
/n/9 = NULL, \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 5\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 = 
NULL), dim=4, dimnames=list(as.character(2:5)))))[] 
Underfull \hbox (badness 10000) in paragraph at lines 43454--43456
[]\T1/pcr/m/n/10 removeTaskCallback []\T1/ptm/m/n/10 un-registers a func-tion t
hat was reg-is-tered ear-lier via
[629]
Underfull \hbox (badness 10000) in paragraph at lines 43534--43537
[][][]\T1/pcr/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer .
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Underfull \hbox (badness 3872) in paragraph at lines 43652--43655
[]\T1/ptm/m/n/10 Duncan Tem-ple Lang (2001) \T1/ptm/m/it/10 Top-level Task Call
-backs in R\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / developer .
[632]
Underfull \hbox (badness 5475) in paragraph at lines 43718--43722
[][][]\T1/pcr/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/pcr/m/n/10 https : / /
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Underfull \hbox (badness 1655) in paragraph at lines 44139--44146
\T1/ptm/m/n/10 may also be known as `[]\T1/pcr/m/n/10 GB[]\T1/ptm/m/n/10 ', `[]
\T1/pcr/m/n/10 GB-Eire[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Belfast[]\T1
/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Guernsey[]\T1/ptm/m/n/10 ',
Underfull \hbox (badness 2253) in paragraph at lines 44147--44152
[]\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-turns a char-ac-ter vec-tor, se
e the ex-am-ples for typ-i-cal cases. It may
Underfull \hbox (badness 1655) in paragraph at lines 44147--44152
\T1/ptm/m/n/10 have an at-tribute []\T1/pcr/m/n/10 "Version"[]\T1/ptm/m/n/10 , 
some-thing like `[]\T1/pcr/m/n/10 "2023a"[]\T1/ptm/m/n/10 '. (It does on sys-te
ms us-ing
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Underfull \hbox (badness 4467) in paragraph at lines 44201--44210
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-
turns the time-zone names known to the cur-rently se-
Underfull \hbox (badness 3954) in paragraph at lines 44201--44210
\T1/ptm/m/n/10 lected Ol-son/IANA database. The system-specific lo-ca-tion in t
he file sys-tem varies,
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Underfull \hbox (badness 1337) in paragraph at lines 44298--44306
\T1/ptm/m/n/10 a file `\T1/pcr/m/n/10 localtime\T1/ptm/m/n/10 ', usu-ally un-de
r `\T1/pcr/m/n/10 /etc\T1/ptm/m/n/10 ' (but pos-si-bly un-der `\T1/pcr/m/n/10 /
usr/local/etc\T1/ptm/m/n/10 ' or
Underfull \hbox (badness 10000) in paragraph at lines 44307--44310
[]\T1/ptm/m/n/10 `Because the time zone iden-ti-fier is ex-tracted from the sym
-link tar-get name of
[641]
Underfull \hbox (badness 3460) in paragraph at lines 44366--44369
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / data . iana . org /
Underfull \hbox (badness 4429) in paragraph at lines 44370--44372
[][][]$\T1/pcr/m/n/10 https : / / data . iana . org / time-[]zones / theory . h
tml$[][] \T1/ptm/m/n/10 for the `rules' of the Ol-
Overfull \hbox (31.3804pt too wide) in paragraph at lines 44379--44379
 []\T1/pcr/m/n/9 ## typically some acronyms/aliases such as "UTC", "NZ", "MET",
 "Eire", ..., but[] 
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Overfull \hbox (15.18042pt too wide) in paragraph at lines 44720--44720
 []\T1/pcr/m/n/9 trace(pt, tracer = quote(cat(sprintf("tracing pt(*, ncp = %.15
g)\n", ncp))),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 44722--44722
 []\T1/pcr/m/n/9 power.t.test(20, 1, power=0.8, sd=NULL)  ##--> showing the ncp
 root finding:[] 
[647]
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Overfull \hbox (84.78088pt too wide) in paragraph at lines 44819--44819
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
Overfull \hbox (84.78088pt too wide) in paragraph at lines 44821--44821
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
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Underfull \hbox (badness 6542) in paragraph at lines 45095--45097
[]\T1/pcr/m/n/10 cospi(x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sinpi(x)[]\T1/ptm/
m/n/10 , and []\T1/pcr/m/n/10 tanpi(x)[]\T1/ptm/m/n/10 , com-pute []\T1/pcr/m/n
/10 cos(pi*x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sin(pi*x)[]\T1/ptm/m/n/10 , an
d
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Overfull \hbox (30.78088pt too wide) in paragraph at lines 45214--45214
 []\T1/pcr/m/n/10 trimws(x, which = c("both", "left", "right"), whitespace = "[
 \t\r\n]") 
[654]
Underfull \hbox (badness 1708) in paragraph at lines 45282--45290
[]\T1/pcr/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
 er-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 3713) in paragraph at lines 45282--45290
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/pcr/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[655]
Underfull \hbox (badness 4859) in paragraph at lines 45322--45327
[][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 for set-ting er-ror han-dle
rs and sup-press-ing the print-ing of er-ror mes-sages;
[656]
Underfull \hbox (badness 3895) in paragraph at lines 45384--45397
[]\T1/ptm/m/n/10 A char-ac-ter string. The pos-si-ble val-ues are listed in the
 struc-ture []\T1/pcr/m/n/10 TypeTable []\T1/ptm/m/n/10 in
Underfull \hbox (badness 1303) in paragraph at lines 45384--45397
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/main/util.c\T1/ptm/m/n/10 '. Cur-rent val-ue
s are the vec-tor types []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "integer"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2452) in paragraph at lines 45384--45397
[]\T1/pcr/m/n/10 "promise"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "object"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "language"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "char"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "..."[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "a
ny"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expression"[]\T1/ptm/m/n/10 ,
[657]
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 45733--45733
 []\T1/pcr/m/n/9 ll <- list(as.name("sinc"), quote( a + b ), 1:10, letters, exp
ression(1+x))[] 
[662]
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Underfull \hbox (badness 1137) in paragraph at lines 45872--45879
[]\T1/ptm/m/n/10 When a func-tion call-ing []\T1/pcr/m/n/10 UseMethod("fun") []
\T1/ptm/m/n/10 is ap-plied to an ob-ject with class vec-tor
[665]
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 46251--46251
 []\T1/pcr/m/n/9 (xx <- intToUtf8(x, , TRUE)) # will only display in some local
es and fonts[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 46260--46260
 []\T1/pcr/m/n/9 system(paste("od -x", foo)) # 2-byte units, correct on little-
endian platforms[] 
[670]
Underfull \hbox (badness 1721) in paragraph at lines 46322--46339
[][][]\T1/pcr/m/n/10 file.rename[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 f
ile.symlink[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 dir.create[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dir.exists[][][][]\T1/ptm/m/n/10 , [][][]\
T1/pcr/m/n/10 normalizePath[][][][]\T1/ptm/m/n/10 ,
[671]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 46424--46424
 []\T1/pcr/m/n/9 try( substr(x, 1,1) ) # gives \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 in
valid multibyte string\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 error in a UTF-8 locale[] 
[672]
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[]\T1/ptm/m/n/10 The atomic modes are []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric" []\
T1/ptm/m/n/10 (syn-onym []\T1/pcr/m/n/10 "double"[]\T1/ptm/m/n/10 ),
Underfull \hbox (badness 3471) in paragraph at lines 46491--46497
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 mode = "any"[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 is.vector []\T1/ptm/m/n/10 may re-turn []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/
n/10 for the atomic modes, [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 and
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Underfull \hbox (badness 1014) in paragraph at lines 46719--46722
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if
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Overfull \hbox (36.78088pt too wide) in paragraph at lines 46828--46828
 []      \T1/pcr/m/n/10 header = ngettext(n, "Warning message:\n", "Warning mes
sages:\n"),[] 
[678]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 46905--46905
 []\T1/pcr/m/n/9 ## at the end prints all three warnings, from the \TS1/pcr/m/n
/9 '\T1/pcr/m/n/9 option(warn = 0)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 above[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 46913--46913
 []\T1/pcr/m/n/9 x <- 1:36; for(n in 1:13) for(m in 1:12) A <- matrix(x, n,m) #
 There were 105 warnings ...[] 
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Underfull \hbox (badness 1783) in paragraph at lines 46978--46980
[]\T1/pcr/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 months []\T1/pt
m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[680]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 47008--47008
 []\T1/pcr/m/n/9 ## Show how easily you get month, day, year, day (of {month, w
eek, yr}), ... :[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 47020--47020
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Even simpler:  Date -> Matrix
 - dropping time info {sec,min,hour, isdst}[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 47023--47023
 []\T1/pcr/m/n/9 d2mat(seq(as.Date("2000-02-02"), by=1, length.out=30)) # has R
 1.0.0\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s release date[] 
[681]
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 arr.ind == TRUE []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 x []\T1/ptm/m/n/10 is an [][][]\T1/pcr/m/n/10 array[][][] []\T1/ptm
/m/n/10 (has a [][][]\T1/pcr/m/n/10 dim[][][] []\T1/ptm/m/n/10 at-tribute), the
 re-sult is
Underfull \hbox (badness 2564) in paragraph at lines 47085--47090
[]\T1/pcr/m/n/10 arrayInd(which(x), dim(x), dimnames(x))[]\T1/ptm/m/n/10 , name
ly a ma-trix whose rows each
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Underfull \hbox (badness 2818) in paragraph at lines 47183--47189
[]\T1/ptm/m/n/10 For a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 vec-
tor []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with both []\T1/pcr/m/n/10 FALSE []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 val-ues, []\T1/pcr/m/n/10
 which.min(x) []\T1/ptm/m/n/10 and
[683]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 47218--47218
 []\T1/pcr/m/n/9 ## Find the first occurrence, i.e. the first TRUE, if there is
 at least one:[] 
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Underfull \hbox (badness 2846) in paragraph at lines 47713--47717
[]\T1/pcr/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[691]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 47753--47753
 []\T1/pcr/m/n/9 .packages(all.available = TRUE) # return all available as char
acter vector[] 
Underfull \hbox (badness 3209) in paragraph at lines 47774--47778
[]\T1/pcr/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[692]) (./compiler-pkg.tex
Chapter 2.
[693]
Underfull \hbox (badness 2884) in paragraph at lines 107--121
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 options []\T1/ptm/m/n/10 ar-gu-ment can b
e used to con-trol com-piler op-er-a-tion. There are cur-
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\T1/ptm/m/n/10 rently four op-tions: []\T1/pcr/m/n/10 optimize[]\T1/ptm/m/n/10 
, []\T1/pcr/m/n/10 suppressAll[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressUndef
ined[]\T1/ptm/m/n/10 , and
[694]
[695]
[696]) (./datasets-pkg.tex
Chapter 3.
[697]
[698]
[699]
[700]
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 []  \T1/pcr/m/n/9 plot(ff, data = anscombe, col = "red", pch = 21, bg = "orang
e", cex = 1.2,[] 
[701]
[702]
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 []\T1/pcr/m/n/9 coplot(accel ~ dist | as.factor(event), data = attenu, show.gi
ven = FALSE)[] 
[703]
[704]
[705]
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 []           \T1/pcr/m/n/9 start = c(lrc = log(.35)), algorithm = "plinear", t
race = TRUE)[] 
[706]
[707]
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[708]
[709]
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[710]
[711]
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[712]
[713]
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[714]
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[716]
[717]
[718]
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 []\T1/pcr/m/n/9 plot(names(te), te, type = "h", main = f.tit, xlab = "Eruption
 time (sec)")[] 
[719]
[720]
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[]\T1/ptm/m/n/10 Finally, []\T1/pcr/m/n/10 freeny []\T1/ptm/m/n/10 is a data fr
ame with vari-ables []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lag.q
uarterly.revenue[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 price.index[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 income.level[]\
T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 market.potential []\T1/ptm/m/n/10 ob-taine
d from the above
[721]
[722]
[723]
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[724]
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 []\T1/pcr/m/n/9 model1 <- glm(case ~ spontaneous+induced, data = infert, famil
y = binomial())[] 
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 []  \T1/pcr/m/n/9 model3 <- clogit(case ~ spontaneous+induced+strata(stratum),
 data = infert)[] 
[725]
[726]
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 []\T1/pcr/m/n/9 ## Iris versicolor "differs twice as much from I. setosa as fr
om I. virginica"[] 
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 []\T1/pcr/m/n/9 ## equivalence of legacy array (iris3) and data.frame (iris) r
epresentation[] 
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 []                                        \T1/pcr/m/n/9 sub(" W.",".Width", dn
i3[[2]])))),[] 
[727]
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 []    \T1/pcr/m/n/9 Species = gl(3, 50, labels = sub("S", "s", sub("V", "v", d
ni3[[3]]))))[] 
[728]
[729]
[730]
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[731]
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[733]
[734]
[735]
[736]
[737]
[738]
[739]
Underfull \hbox (badness 4779) in paragraph at lines 2738--2741
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[740]
[741]
[742]
[743]
[744]
[745]
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 []\T1/pcr/m/n/9 pairs(quakes, main = "Fiji Earthquakes, N = 1000", cex.main = 
1.2, pch = ".")[] 
[746]
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 []\T1/pcr/m/n/9 myrandu <- matrix(NA_real_, 400, 3, dimnames = list(NULL, c("x
","y","z")))[] 
[747]
[748]
[749]
[750]
[751]
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 []\T1/pcr/m/n/9 ## Alaska and Hawaii are placed just off the West Coast (for c
ompact map drawing):[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 3523--3523
 []\T1/pcr/m/n/9 ## state.center2 := version of state.center with "correct" coo
rdinates for AK & HI:[] 
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 []\T1/pcr/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
[752]
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\T1/ptm/m/n/10 Av. Cir-cu-laire, 3, B-1180 BRUS-SELS Cur-rently at [][]$\T1/pcr
/m/n/10 https : / / www . sidc . be / SILSO /
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 []\T1/pcr/m/n/9 ## How to recreate the "old" sunspot.month (R <= 3.0.3) =: sun
spot.month.0[] 
[753]
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 []\T1/pcr/m/n/9 (t2 <- c(min(  end(sm)[1],end(sy)[1]), 12)) # Dec 1983 (will n
ot be updated!)[] 
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 []          \T1/pcr/m/n/9 ## The yearly series *is* close to the averages of t
he monthly one:[] 
[754] [755]
[756]
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[757]
[758]
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 []       \T1/pcr/m/n/9 xlab = "ToothGrowth data: length vs dose, given type of
 supplement")[] 
[759]
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[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/pcr/m/n/10 h
ttps : / / web . archive . org / web /
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\T1/pcr/m/n/10 20110523225828 / http : / / www . ltrr . arizona . edu / ~hallma
n / sitephotos /
[760]
[761]
[762]
[763]
[764]
[765] [766]
[767]
[768]
[769]
[770]
[771]
[772]
[773]) (./grDevices-pkg.tex
[774]
Chapter 4.
[775]
[776]
[777]
[778]
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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/pcr/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/pcr/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
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\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R\T1/pcr/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 
' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack
-age func-tion
[779]
[780]
[781]
[782]
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 []\T1/pcr/m/n/10 cairo_pdf(filename = if(onefile) "Rplots.pdf" else "Rplot%03d
.pdf",[] 
[783]
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[785]
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[787]
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[]\T1/ptm/m/n/10 Hexadecimal string col-ors can be in the long hex-adec-i-mal f
orm (e.g., []\T1/pcr/m/n/10 "#rrggbb" []\T1/ptm/m/n/10 or
[788]
[789]
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 []\T1/pcr/m/n/9 names(clmult) <- sapply(clmult, function(x) paste(crgb[,x[1]],
 collapse = ","))[] 
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 []    \T1/pcr/m/n/9 lattice::cloud(blue ~ red + green, data = as.data.frame(tc
), col = cNms)[] 
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 []\T1/pcr/m/n/9 cNms[isC] # "white" "black" "blue" "cyan" "green" "magenta" "r
ed" "yellow"[] 
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 []   \T1/pcr/m/n/9 plot3d (tc, col = cNms, size = 11) # --> rotate w/ mouse; e
nlarged corners:[] 
[790]
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[794]
[795]
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 []\T1/pcr/m/n/9 zapsmall(lab <- convertColor(cols, from = "sRGB", to = "Lab", 
scale.in = 255))[] 
[796]
[797]
[798]
[799]
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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/pcr/m/n/10 c("LinearGradient", "RadialGradient", "TilingPattern")
[800]
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[802]
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[804]
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[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 dev.print []\T1/ptm/m/n/10 i
s to pro-duce and print a postscript copy. This will not
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\T1/ptm/m/n/10 sys-tem: see [][][]\T1/pcr/m/n/10 postscript[][][] []\T1/ptm/m/n
/10 for how to set this up. Win-dows users may pre-fer to use
[805]
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 []\T1/pcr/m/n/10 dev2bitmap(file, type = "png16m", height = 7, width = 7, res 
= 72,[] 
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[]\T1/ptm/m/n/10 The types avail-able will de-pend on the ver-sion of []\T1/pcr
/m/n/10 ghostscript[]\T1/ptm/m/n/10 , but are likely to in-
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[]\T1/pcr/m/n/10 "tiffg4"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffgray"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "tifflzw"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffp
ack"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiff12nc"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "tiff24nc"[]\T1/ptm/m/n/10 ,
[806]
[807]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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 []\T1/pcr/m/n/10 embedGlyphs(file, glyphInfo, outfile = file, options = charac
ter())[] 
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/pcr/m/n/10 embedGlyphs() []\T1/ptm/m/n/10 is rec-om-mended for []\T1/pcr/
m/n/10 pdf() []\T1/ptm/m/n/10 files that con-tain type-set glyphs (see
[810]
[811]
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[]\T1/ptm/m/n/10 are given, then it uses those in a call to []\T1/pcr/m/n/10 se
tGraphicsEventHandlers []\T1/ptm/m/n/10 to re-place
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\T1/ptm/m/n/10 any ex-ist-ing han-dlers in the cur-rent de-vice. This is for co
m-pat-i-bil-ity with pre-2.12.0
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\T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions. The cur-rent nor-mal way to set up e
vent han-dlers is to set them us-ing
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[]\T1/pcr/m/n/10 setGraphicsEventHandlers []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 
setGraphicsEventEnv []\T1/ptm/m/n/10 on one or more graph-ics
[812]
[813]
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 []\T1/pcr/m/n/9 dragplot <- function(..., xlim = NULL, ylim = NULL, xaxs = "r"
, yaxs = "r") {[] 
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[814]
[815]
[816]
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 []\T1/pcr/m/n/10 gray.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE) 
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 []\T1/pcr/m/n/10 grey.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE)[] 
[817]
[818]
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[821]
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[822]
[823]
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[826]
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 []\T1/pcr/m/n/10 colorConverter(toXYZ, fromXYZ, name, white = NULL, vectorized
 = FALSE)[] 
[827]
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 []\T1/pcr/m/n/9 zapsmall(luv <- convertColor(cols, from = "sRGB", to = "Luv", 
scale.in = 255))[] 
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 []\T1/pcr/m/n/9 (hex <- convertColor(luv, from = "Luv",  to = hexcolor, scale.
out = NULL))[] 
[828]
[829]
[830]
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[]\T1/pcr/m/n/10 nclass.FD []\T1/ptm/m/n/10 uses the Freedman-Diaconis choice b
ased on the inter-quartile range
[831]
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 []\T1/pcr/m/n/10 palette.colors(n = NULL, palette = "Okabe-Ito", alpha, recycl
e = FALSE,[] 
[832]
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 []\T1/pcr/m/n/9 (palette(gray(seq(0,.9,length.out = 25)))) # gray scales; prin
t old palette[] 
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 []\T1/pcr/m/n/9 ## Demonstrate the colors 1:8 in different palettes using a cu
stom matplot()[] 
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 []    \T1/pcr/m/n/9 matplot(x, type = "l", lwd = 4, lty = 1, col = 1:n, ylab =
 "", main=main)[] 
[833]
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 []\T1/pcr/m/n/9 palROB <- colorRampPalette(c("red", "darkorange2", "blue"), sp
ace = "Lab")[] 
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 []\T1/pcr/m/n/10 hcl.colors(n, palette = "viridis", alpha = NULL, rev = FALSE,
 fixup = TRUE) 
[834]
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[]\T1/ptm/m/n/10 the type of palettes to list: []\T1/pcr/m/n/10 "qualitative"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sequential"[]\T1/ptm/m/n/10 ,
[835]
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[]\T1/ptm/m/n/10 For ex-am-ple, []\T1/pcr/m/n/10 "Dark 3" []\T1/ptm/m/n/10 work
s well for shad-ing points or lines in up to five groups,
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\T1/pcr/m/n/10 wikipedia . org / w / index . php ? title = HCL _ color _ space 
& oldid = 883465135$[][]\T1/ptm/m/n/10 .
[836]
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[837]
[838]
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[]\T1/ptm/m/n/10 as `\T1/pcr/m/n/10 "CP1250.enc"\T1/ptm/m/n/10 ' (Cen-tral Eu-r
o-pean), []\T1/pcr/m/n/10 "CP1251.enc"
[839]
[840]
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\T1/ptm/m/n/10 PostScript fonts fam-i-lies of those names which are in-cluded (
or cloned) in all com-mon
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\T1/ptm/m/n/10 cod-ings (ex-cept []\T1/pcr/m/n/10 "TeXtext"[]\T1/ptm/m/n/10 ) a
gree over that range. Some en-cod-ings are su-per-sets of
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\T1/ptm/m/n/10 ISO-Latin1. How-ever, if ac-cented and spe-cial char-ac-ters do 
not come out as you ex-
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 fonts[]\T1/ptm/m/n/10 ,
[844]
[845]
[846]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4875 \aliasA{symbol}{plotmath}{symbol}
                                         [847] [848]
[849]
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[851]
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[854]
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, [][]$\T1/pcr/m/n/10 https : / / ww
w . iso . org / standard / 34342 . html$[][]\T1/ptm/m/n/10 . See also
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 []\T1/pcr/m/n/9 ## Not run: dev.print(png, filename = "myplot.png", width = 10
24, height = 768)[] 
[855]
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[]\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE[]\T1/ptm/m/n/10 
, give a C in-te-ger for-mat such as
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[858]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[][][]\T1/pcr/m/n/10 postscriptFonts[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 Devices[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 check.options[][][]
 []\T1/ptm/m/n/10 which is called from both
[859]
[860]
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[]\T1/pcr/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Bookman"[]\T1
/ptm/m/n/10 , []\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "He
lvetica"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10 
,
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[]\T1/pcr/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/pc
r/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
[]\T1/pcr/m/n/10 "URWBookman"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusMon"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusSan" []\T1/ptm/m/n/10 (syn-onym []\T1/p
cr/m/n/10 "URWHelvetica"[]\T1/ptm/m/n/10 ),
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[]\T1/ptm/m/n/10 There are also map-pings for []\T1/pcr/m/n/10 "ComputerModern"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ComputerModernItalic" []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 "Japan1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1HeiMin"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1GothicBBB"[]\T1/ptm/m/n/10 , and []\T1/p
cr/m/n/10 "Japan1Ryumin" []\T1/ptm/m/n/10 for
Underfull \hbox (badness 5388) in paragraph at lines 5953--5958
[]\T1/pcr/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/p
cr/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
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 []\T1/pcr/m/n/9 ## time ranges in diverse scales:% also in ../../../../tests/r
eg-tests-1c.R[] 
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 []\T1/pcr/m/n/10 quartz.save(file, type = "png", device = dev.cur(), dpi = 100
, ...)[] 
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[]\T1/ptm/m/n/10 Calling []\T1/pcr/m/n/10 quartz() []\T1/ptm/m/n/10 sets [][][]
\T1/pcr/m/n/10 .Device[][][] []\T1/ptm/m/n/10 to []\T1/pcr/m/n/10 "quartz" []\T
1/ptm/m/n/10 for on-screen de-vices and to
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 []  \T1/pcr/m/n/9 quartzFonts("mono")          # the list(mono = ..) sublist o
f quartzFonts()[] 
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\T1/ptm/m/n/10 play List", [][]$\T1/pcr/m/n/10 https : / / stattech . wordpress
 . fos . auckland . ac . nz / 2015 / 12 / 21 /
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 []\T1/pcr/m/n/9 rgb((0:15)/15, green = 0, blue = 0, names = paste("red", 0:15,
 sep = "."))[] 
Underfull \hbox (badness 10000) in paragraph at lines 6641--6644
[]\T1/pcr/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
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Underfull \vbox (badness 10000) has occurred while \output is active
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 []\T1/pcr/m/n/9 p <- persp(x, y, fxy <- outer(x,y), phi = 20, theta = 15, r = 
3, ltheta = -75,[] 
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 []\T1/pcr/m/n/9 ## now some "horizontal rays" (going from center to very left 
or very right):[] 
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 []    \T1/pcr/m/n/9 lines(trans3d(x=seq(x1, x2, by=0.5), y= -0.7, z = z, pmat 
= p, continuous = CNT),[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6876--6876
 []\T1/pcr/m/n/9 doHor(-10,  0, z = -0.5, col = 2)  # x in [-10, 0] -- to the v
ery left : fine[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 6877--6877
 []\T1/pcr/m/n/9 doHor(-.5,  2, z = -0.52,col = 4) # x in [-0.5, 2] only {to th
e right} --> all fine[] 
Overfull \hbox (117.7803pt too wide) in paragraph at lines 6878--6878
 []\T1/pcr/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 continuous=TRUE\TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 ):[] 
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 []\T1/pcr/m/n/10 windows(width, height, pointsize, record, rescale, xpinch, yp
inch, 
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 []\T1/pcr/m/n/10 win.metafile(filename = "", width = 7, height = 7, pointsize 
= 12,[] 
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Underfull \hbox (badness 10000) in paragraph at lines 7284--7289
[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 record[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 rescale[]\T1/ptm/m/n/10
 ,
Underfull \hbox (badness 1803) in paragraph at lines 7284--7289
[]\T1/pcr/m/n/10 xpinch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 ypinch[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 canvas[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 gamma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 xpos[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 ypos[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 buffered[]\T1/
ptm/m/n/10 ,
Underfull \hbox (badness 2941) in paragraph at lines 7284--7289
[]\T1/pcr/m/n/10 restoreConsole[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 clickToConfi
rm[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 
fillOddEven []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/9 windows()  # make sure we have the right device type (availabl
e on Windows only)[] 
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Underfull \hbox (badness 3590) in paragraph at lines 7431--7434
[]\T1/ptm/m/n/10 The \T1/phv/m/n/10 R \T1/ptm/m/n/10 func-tion is a wrap-per fo
r two de-vices, one based on Xlib ([][]$\T1/pcr/m/n/10 https : / /
Underfull \hbox (badness 2393) in paragraph at lines 7431--7434
\T1/pcr/m/n/10 en . wikipedia . org / wiki / Xlib$[][]\T1/ptm/m/n/10 ) and one 
us-ing cairo-graph-ics ([][]$\T1/pcr/m/n/10 https : / / www .
Overfull \hbox (12.78088pt too wide) in paragraph at lines 7442--7442
 []    \T1/pcr/m/n/10 fonts, family, xpos, ypos, title, type, antialias, symbol
family)[] 
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Underfull \hbox (badness 1189) in paragraph at lines 7507--7509
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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Underfull \hbox (badness 10000) in paragraph at lines 7612--7614
[]\T1/pcr/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
[887]
Underfull \hbox (badness 10000) in paragraph at lines 7657--7664
[]\T1/ptm/m/n/10 Problems with in-cor-rect ren-der-ing of sym-bols (e.g., of []
\T1/pcr/m/n/10 quote(pi) []\T1/ptm/m/n/10 and
Underfull \hbox (badness 2469) in paragraph at lines 7657--7664
[]\T1/pcr/m/n/10 expression(10^degree)[]\T1/ptm/m/n/10 ) have been seen on Linu
x sys-tems which have the Wine
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Underfull \hbox (badness 5607) in paragraph at lines 7739--7743
[]\T1/pcr/m/n/10 type = "Xlib" []\T1/ptm/m/n/10 sup-ports `True-Color', `Pseu-d
o-Color', `GrayScale', []\T1/pcr/m/n/10 StaticGray []\T1/ptm/m/n/10 and
[889]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 7791--7791
 []        \T1/pcr/m/n/9 function(...) grDevices::X11.options(width = 8, height
 = 6, xpos = 0,[] 
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Underfull \hbox (badness 5637) in paragraph at lines 7927--7933
[]\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica" []\T1
/ptm/m/n/10 (the de-fault), []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10
 ,
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Overfull \hbox (63.78036pt too wide) in paragraph at lines 8094--8094
 []\T1/pcr/m/n/9 op <- options(warn = 2)# ==> warnings would be errors, we supp
ress the one "we know":[] 
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Underfull \hbox (badness 1231) in paragraph at lines 8133--8135
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., []\T1/pcr/m/n/10
 number[i] []\T1/ptm/m/n/10 is the mul-ti-plic-ity of
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 []\T1/pcr/m/n/9 xy <- data.frame(x = round(sort(stats::rnorm(100))), y = stats
::rnorm(100))[] 
[895]
[896]) (./graphics-pkg.tex
Chapter 5.
Underfull \hbox (badness 4647) in paragraph at lines 16--18
[]\T1/ptm/m/n/10 For a com-plete list of func-tions with in-di-vid-ual help pag
es, use []\T1/pcr/m/n/10 library(help =
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Overfull \hbox (6.05087pt too wide) in paragraph at lines 450--450
 []  \T1/pcr/m/n/10 gap.axis <- if(perpendicular(side, las)) 0.25 else 1[] 
Underfull \hbox (badness 4048) in paragraph at lines 482--488
[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 at = NULL[]\T1/ptm/m/n/10 , pretty tick 
mark lo-ca-tions are com-puted in-ter-nally (the same way
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 []\T1/pcr/m/n/9 ## now shrink the window (in x- and y-direction) and observe t
he axis labels drawn[] 
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Overfull \hbox (15.18042pt too wide) in paragraph at lines 697--697
 []\T1/pcr/m/n/9 axis.Date(3, at = as.integer(as.Date("2023-04-01")), col.axis 
= "darkgreen")[] 
[907]
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 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.POSIXct("2022-10-01 00:01:30"), col.ax
is = "orange")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 717--717
 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.numeric(as.POSIXct("2022-10-01 00:00:3
0")) + 0.25,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 718--718
 []                \T1/pcr/m/n/9 col.axis = "forestgreen", col = "darkgreen", m
gp = c(3,2,0))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 724--724
 []\T1/pcr/m/n/9 plot(data.frame(HST, y = 1), xaxt = "n", xlab = "Hawaii Standa
rd Time (HST)")[] 
Underfull \hbox (badness 10000) in paragraph at lines 751--755
[]\T1/ptm/m/n/10 numeric vec-tor of length three, de-fault-ing to [][][]\T1/pcr
/m/n/10 par[][][]("xaxp") []\T1/ptm/m/n/10 or
Underfull \hbox (badness 3250) in paragraph at lines 751--755
[][][]\T1/pcr/m/n/10 par[][][]("yaxp") []\T1/ptm/m/n/10 de-pend-ing on the []\T
1/pcr/m/n/10 side []\T1/ptm/m/n/10 ar-gu-ment ([]\T1/pcr/m/n/10 par("xaxp") []\
T1/ptm/m/n/10 if
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 []                 \T1/pcr/m/n/9 axp = c(get_axp(usr.i), n = 3), log = TRUE, n
intLog = 5))[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 875--875
 []        \T1/pcr/m/n/10 add = FALSE, ann = !add && par("ann"), args.legend = 
NULL, ...)[] 
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Underfull \hbox (badness 10000) in paragraph at lines 1020--1024
[][][]\T1/pcr/m/n/10 plot[][][](..., type = "h")[]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 dotchart[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 hist[][][] []\T1
/ptm/m/n/10 for bars of a \T1/ptm/m/it/10 con-tin-u-ous \T1/ptm/m/n/10 vari-abl
e.
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Overfull \hbox (133.98029pt too wide) in paragraph at lines 1037--1037
 []        \T1/pcr/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1039--1039
 []\T1/pcr/m/n/9 (xt <- xtabs(Freq ~ Survived + Class + Sex, d.Titanic, subset 
= Age=="Adult"))[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 1041--1041
 []\T1/pcr/m/n/9 mosaicplot(xt[,,"Male"], main = "mosaicplot(Freq ~ Class + Sur
vived, *)", color=TRUE)[] 
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Overfull \hbox (31.3804pt too wide) in paragraph at lines 1324--1324
 []\T1/pcr/m/n/9 # *add* notches (somewhat funny here <--> warning "notches .. 
outside hinges"):[] 
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Underfull \hbox (badness 2503) in paragraph at lines 1486--1495
\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 horizontal []\T1/ptm/m/n/10 is false, and 
[]\T1/pcr/m/n/10 xlim []\T1/ptm/m/n/10 hor-i-zon-tally. []\T1/pcr/m/n/10 xaxt[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yaxt[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3375) in paragraph at lines 1521--1523
[]\T1/ptm/m/n/10 whisker line type (de-fault: []\T1/pcr/m/n/10 "dashed"[]\T1/pt
m/m/n/10 ),
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 1593--1593
 []\T1/pcr/m/n/9 boxplot(z,   col.axis = "skyblue3", main = "boxplot(*, col.axi
s=..,main=..)")[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1594--1594
 []\T1/pcr/m/n/9 plot(z[[1]], col.axis = "skyblue3", main =    "plot(*, col.axi
s=..,main=..)")[] 
[921]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1600--1600
 []\T1/pcr/m/n/9 splus <- list(boxwex = 0.4, staplewex = 1, outwex = 1, boxfill
 = "grey40",[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 1601--1601
 []              \T1/pcr/m/n/9 medlwd = 3, medcol = "white", whisklty = 3, outl
ty = 1, outpch = NA)[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1634--1634
 []  \T1/pcr/m/n/10 yaxlabels = NULL, xlim = NULL, ylim = c(0, 1), weights = NU
LL, ...)[] 
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Underfull \hbox (badness 10000) in paragraph at lines 1907--1913
[][][]\T1/pcr/m/n/10 contourLines[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
filled.contour[][][] []\T1/ptm/m/n/10 for color-filled con-tours, [][][]\T1/pcr
/m/n/10 contourplot[][][] []\T1/ptm/m/n/10 (and
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1927--1927
 []\T1/pcr/m/n/9 contour(x, x, z, ylim = c(-6, 6), nlevels = 20, lty = 2, metho
d = "simple",[] 
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 []\T1/pcr/m/n/9 contour(z, levels=levs[-c(1,length(levs))], col = 1:5, lwd = 1
:3 *1.5, lty = 1:3)[] 
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 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1964--1964
 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
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 []\T1/pcr/m/n/10 coplot(formula, data, given.values, panel = points, rows, col
umns, 
[929]
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Overfull \hbox (31.3804pt too wide) in paragraph at lines 2178--2178
 []\T1/pcr/m/n/9 coplot(lat ~ long | depth, data = quakes, given.values = given
.depth, rows = 1)[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2183--2183
 []\T1/pcr/m/n/9 coplot(ll.dm, data = quakes, number = c(4, 7), show.given = c(
TRUE, FALSE))[] 
[931]
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Overfull \hbox (18.78088pt too wide) in paragraph at lines 2357--2357
 []\T1/pcr/m/n/10 dotchart(x, labels = NULL, groups = NULL, gdata = NULL, offse
t = 1/8, 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 2358--2358
 []         \T1/pcr/m/n/10 ann = par("ann"), xaxt = par("xaxt"), frame.plot = T
RUE, log = "",[] 
[933]
Underfull \hbox (badness 1430) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/pcr/m/n/10 
"n" []\T1/ptm/m/n/10 to sup-press and see also
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Overfull \hbox (78.78088pt too wide) in paragraph at lines 2469--2469
 []               \T1/pcr/m/n/10 color.palette = function(n) hcl.colors(n, "YlO
rRd", rev = TRUE),[] 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 2471--2471
 []               \T1/pcr/m/n/10 plot.title, plot.axes, key.title, key.axes, ke
y.border = NULL,[] 
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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Underfull \hbox (badness 7273) in paragraph at lines 2564--2568
[][][]\T1/pcr/m/n/10 contour[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 image
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 hcl.colors[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 gray.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 palette[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 contourplot[][][] []\T1/p
tm/m/n/10 and
[936]
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 2813--2813
 []\T1/pcr/m/n/9 ## maybe change the desired number of tick marks:  par(lab = c
(mx, my, 7))[] 
[940]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 2834--2834
 []\T1/pcr/m/n/9 plot(8:270, log="xy") ; grid() # at (1, 10, 100); if preferrin
g "all" grid lines:[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2861--2861
 []     \T1/pcr/m/n/10 density = NULL, angle = 45, col = "lightgray", border = 
NULL,[] 
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Underfull \hbox (badness 1226) in paragraph at lines 2988--2992
\T1/pcr/m/n/10 1)[]\T1/ptm/m/n/10 , they are the rel-a-tive fre-quen-cies []\T1
/pcr/m/n/10 counts/n []\T1/ptm/m/n/10 and in gen-eral sat-isfy
[943]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3041--3041
 []\T1/pcr/m/n/9 ## Extreme outliers; the "FD" rule would take very large numbe
r of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 breaks\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3045--3045
 []\T1/pcr/m/n/9 length(hh$breaks) ## typically 1 million -- though 1e6 was "a 
suggestion only"[] 
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Underfull \hbox (badness 10000) in paragraph at lines 3107--3110
[][][]\T1/ptm/m/n/10 graphical pa-ram-e-ters[][][], or ar-gu-ments to [][][]\T1
/pcr/m/n/10 hist.default[][][] []\T1/ptm/m/n/10 such as
[945]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3158--3158
 []\T1/pcr/m/n/9 ## The default fuzz in hist.default()  "kills" this, with a "w
rong" message:[] 
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 []\T1/pcr/m/n/9 identifyPch <- function(x, y = NULL, n = length(x), plot = FAL
SE, pch = 19, ...)[] 
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 []        \T1/pcr/m/n/9 ans <- identify(x[!sel], y[!sel], labels = which(!sel)
, n = 1, plot = plot, ...)[] 
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 useRaster []\T1/ptm/m/n/10 is not spec-i-f
ied, raster im-ages are used when the
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[][][]\T1/pcr/m/n/10 getOption[][][]("preferRaster") []\T1/ptm/m/n/10 is true, 
the grid is reg-u-lar and ei-ther
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[][][]\T1/pcr/m/n/10 dev.capabilities[][][]("rasterImage")$rasterImage []\T1/pt
m/m/n/10 is []\T1/pcr/m/n/10 "yes" []\T1/ptm/m/n/10 or it is
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 []\T1/pcr/m/n/9 # Visualize as matrix.  Need to transpose matrix and then flip
 it horizontally:[] 
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 []\T1/pcr/m/n/9 imageM <- function(m, grid = max(dim(m)) <= 25, asp = (nrow(m)
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 []        \T1/pcr/m/n/9 axis(side, at=at, labels=as.character(j+1L), col="gray
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 []\T1/pcr/m/n/9 barplot(yhist$counts, axes = FALSE, xlim = c(0, top), space = 
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 []  \T1/pcr/m/n/9 text  (1, y.leg[i] - 0.1, paste("cex=", formatC(cexv[i])), c
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x = cexv[i])[] 
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engths & coords[] 
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9 '\T1/pcr/m/n/9 , lty = c(2, -1, 1), pch = c(NA, 3, 4), merge = TRUE)",[] 
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 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Filled\TS1/pcr/m/n/9 ' \T1/pc
r/m/n/9 boxes -- see also example(barplot) which may call legend(*, fill=)[] 
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 []\T1/pcr/m/n/9 legend("topright", rownames(VADeaths), fill = gray.colors(nrow
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 []\T1/pcr/m/n/9 legend("bottomright", paste("sin(", 1:7, "pi * x)"), col = 1:7
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 []\T1/pcr/m/n/9 legend(.4,1, "sin(c x)", pch = 21, pt.bg = "white", lty = 1, c
ol = "blue")[] 
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 []   \T1/pcr/m/n/9 plot(1, type = "n", axes = FALSE, ann = FALSE); title(paste
("text.font =",i))[] 
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[][][]\T1/pcr/m/n/10 lines.formula[][][] []\T1/ptm/m/n/10 for the for-mula meth
od; [][][]\T1/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , par-tic-u-larly for []\
T1/pcr/m/n/10 type %in%
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 []        \T1/pcr/m/n/10 log = "", ..., add = FALSE, verbose = getOption("verb
ose"))[] 
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 []\T1/pcr/m/n/9 nd <- length(dv <- seq(as.Date("1959-02-21"), by = "weeks", le
ngth.out = 100))[] 
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[]\T1/ptm/m/n/10 The mag-ni-fi-ca-tion to be used for axis an-no-ta-tion, as a 
mul-ti-ple of
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[]\T1/ptm/m/n/10 which draws the ti-tle. You may want to spec-ify []\T1/pcr/m/n
/10 oma []\T1/ptm/m/n/10 when chang-ing
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
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 []\T1/pcr/m/n/9 pairs(USJudgeRatings, lower.panel = panel.smooth, upper.panel 
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\T1/ptm/m/n/10 func-tions such as [][][]\T1/pcr/m/n/10 plot.default[][][][]\T1/
ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.window[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lines[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 abline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 axis[][][][]\T1/ptm/m/n/10 ,
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[976 </builddir/build/BUILD/R-4.4.3/library/graphics/help/figures/mai.pdf>]
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[977 </builddir/build/BUILD/R-4.4.3/library/graphics/help/figures/oma.pdf>]
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 []\T1/pcr/m/n/9 c(prof.pilots = 16, lawyers = 11, farmers = 10, salesmen = 9, 
physicians = 9,[] 
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 []  \T1/pcr/m/n/9 mechanics = 6, policemen = 6, managers = 6, engineers = 5, t
eachers = 4,[] 
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 []\T1/pcr/m/n/9 points(trans3d(xy[,1], xy[,2], z = 6,          pmat = res), co
l = 2, pch = 16)[] 
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 []\T1/pcr/m/n/9 pie(c(Sky = 78, "Sunny side of pyramid" = 17, "Shady side of p
yramid" = 5),[] 
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 []    \T1/pcr/m/n/9 init.angle = 315, col = c("deepskyblue", "yellow", "yellow
3"), border = FALSE)[] 
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 []\T1/pcr/m/n/9 plot(weight ~ group, data = PlantGrowth)           # numeric v
ector ~ factor[] 
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 []\T1/pcr/m/n/9 plot(PlantGrowth$group, axes = FALSE, main = "no axes")  # ext
remely silly[] 
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 []               \T1/pcr/m/n/10 main = paste("Histogram of", paste(x$xname, co
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[]\T1/ptm/m/n/10 character (or sym-bol) ex-pan-sion: a nu-mer-i-cal vec-tor. Th
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[][] 
[1000 </builddir/build/BUILD/R-4.4.3/library/graphics/help/figures/pch.pdf>]
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lue", cex = .6,[] 
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 PDF/HTML help)[] 
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 []\T1/pcr/m/n/9 ## Not run: png("pch.png", height = 0.7, width = 7, res = 100,
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 []    \T1/pcr/m/n/9 plot(rx, ry, type = "n", axes  =  FALSE, xlab = "", ylab =
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[]\T1/ptm/m/n/10 The code im-ple-ment-ing poly-gon shad-ing was do-nated by Kev
in Buhr
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 []  \T1/pcr/m/n/9 polygon(x, y, xpd = xpd, col = "orange", lty = 2, lwd = 2, b
order = "red")[] 
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 []\T1/pcr/m/n/9 yy <- c(c(0, cumsum(stats::rnorm(n))), rev(c(0, cumsum(stats::
rnorm(n)))))[] 
[1004]
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[]\T1/ptm/m/n/10 character value spec-i-fy-ing the path fill mode: ei-ther []\T
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 []\T1/pcr/m/n/9 rect(100+i, 300+i, 150+i, 380+i, col = rainbow(11, start = 0.7
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 []\T1/pcr/m/n/9 Lab.palette <- colorRampPalette(c("blue", "orange", "red"), sp
ace = "Lab")[] 
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 []\T1/pcr/m/n/9 ## label the 20 very lowest-density points,the "outliers" (wit
h obs.number):[] 
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us  =  FALSE,[] 
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us  =  FALSE,[] 
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 number[i] == 1[]\T1/ptm/m/n/10 , a (sligh
tly en-larged) usual plot-ting sym-bol ([]\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 ) 
is drawn. For
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 []     \T1/pcr/m/n/9 "Le fran�ais, c\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 est facile: 
R�gles, Libert�, Egalit�, Fraternit�...")[] 
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[]\T1/ptm/m/n/10 The po-si-tions of []\T1/pcr/m/n/10 xlab[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sub []\T1/ptm/m/n/10 a
re []\T1/pcr/m/n/10 line []\T1/ptm/m/n/10 (de-fault for []\T1/pcr/m/n/10 xlab [
]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 be-ing
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[]\T1/ptm/m/n/10 vectors con-tain-ing the co-or-di-nates of the ver-tices of th
e poly-gon. See
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 []\T1/pcr/m/n/9 arrows(res$x[nr-3], res$y[nr-3], res$x[nr], res$y[nr], code = 
2, length = 0.1)[] 
[1037]) (./grid-pkg.tex
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Chapter 6.
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[]\T1/ptm/m/n/10 Modification of the view-port (should all be valid ar-gu-ments
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it(1, "inches")))[] 
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a cir-cle grob (a graph-i-cal ob-ject 
de-scrib-ing a cir-cle), but only
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[]\T1/ptm/m/n/10 The meth-ods for grob and gTree call the generic hook func-tio
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[]\T1/ptm/m/n/10 Both func-tions call []\T1/pcr/m/n/10 editDetails []\T1/ptm/m/
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a frame grob (a graph-i-cal ob-ject de
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[]\T1/ptm/m/n/10 The jus-ti-fi-ca-tion of the glyphs rel-a-tive to the ([]\T1/p
cr/m/n/10 x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) lo-ca-tion. 
Can be
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 []\T1/pcr/m/n/10 grid.grabExpr(expr, warn = 2, wrap = wrap.grobs, wrap.grobs =
 FALSE,[] 
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 []                          \T1/pcr/m/n/9 children=gList(grob(name="child", vp
="vp1::vp2")),[] 
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 []           \T1/pcr/m/n/10 default.units = "npc", gp=gpar(col = "grey"), vp =
 NULL)[] 
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Another pos-si-ble use of []\T1/pcr/m/n/10 grid.group() []\T1/
ptm/m/n/10 is to spec-ify both []\T1/pcr/m/n/10 src []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 dst []\T1/ptm/m/n/10 and com-bine
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[]\T1/ptm/m/n/10 is only drawn where it is NOT over-lapped by []\T1/pcr/m/n/10 
src[]\T1/ptm/m/n/10 . The fol-low-ing (ex-tended) Porter-
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[]\T1/pcr/m/n/10 "multiply"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "screen"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "overlay"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "darke
n"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lighten"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "color.dodge"[]\T1/ptm/m/n/10 ,
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 []  \T1/pcr/m/n/9 mask <- as.mask(rectGrob(gp=gpar(col=NA, fill="grey50")), ty
pe="luminance")[] 
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 []  \T1/pcr/m/n/9 pushViewport(viewport(layout=grid.layout(1, 1, widths=unit(1
, "inches"),[] 
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 []                                       \T1/pcr/m/n/9 children=vpList(viewpor
t(name="vp2"))))[] 
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 []\T1/pcr/m/n/9 pushViewport(viewport(x=0, y=0, width=0.25, height=0.25, just=
c("left", "bottom")))[] 
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[]\T1/ptm/m/n/10 There are two hooks called []\T1/pcr/m/n/10 "before.grid.newpa
ge" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "grid.newpage" []\T1/ptm/m/n/10 (see
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 []          \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border =
 NULL,[] 
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 []          \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border =
 NULL,[] 
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 []                \T1/pcr/m/n/9 "Nested rectangles, outer clockwise, inner ant
i-clockwise")[] 
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 []                \T1/pcr/m/n/9 "Overlapping rectangles, one clockwise, other 
anti-clockwise")[] 
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 []\T1/pcr/m/n/9 # Not specifying pathId will treat all points as part of the s
ame path, thus[] 
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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 []                            \T1/pcr/m/n/9 width=unit(1, "inches"), height=un
it(1, "inches")))[] 
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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 []\T1/pcr/m/n/9 grid.text(quote(frac(e^{-x^2/2}, sqrt(2*pi))), x=x, y=y, rot=s
tats::runif(20, -45,45),[] 
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 gridCoords []\T1/ptm/m/n/10 a nu-meric ve
c-tor. For []\T1/pcr/m/n/10 gridGrobCoords []\T1/ptm/m/n/10 a list
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\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 "GridCoords" []\T1/ptm/m/n/10 ob-jects. For 
[]\T1/pcr/m/n/10 gridGTreeCoords []\T1/ptm/m/n/10 a list of ei-ther
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[]\T1/ptm/m/n/10 Either a []\T1/pcr/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) or a
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 grid.legend()[]\T1/ptm/m/n/10 : all the a
r-gu-ments above are passed to
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 []\T1/pcr/m/n/9 unitType(min(unit(1, "in"), unit(1, "npc") + unit(1, "mm")), r
ecurse=TRUE)[] 
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 []\T1/pcr/m/n/10 viewportTransform(group, shear=groupShear(), flip=groupFlip()
, device=TRUE) 
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[]\T1/ptm/m/n/10 This func-tion can be used to gen-er-ate a view-port path for 
use in []\T1/pcr/m/n/10 downViewport []\T1/ptm/m/n/10 or
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[][][]\T1/pcr/m/n/10 viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 push
Viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 popViewport[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 seekViewport[][][][]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 invisible(lapply(trace, function(t) grid.lines(t$x, t$y, gp=gp
ar(col="red"))))[] 
[1159]) (./methods-pkg.tex
[1160]
Chapter 7.
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[]\T1/ptm/m/n/10 func-tion. See that doc-u-men-ta-tion also for de-tails of how
 co-erce meth-ods work. Use
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[][][]\T1/pcr/m/n/10 GroupGenericFunctions[][][] []\T1/ptm/m/n/10 for other in-
for-ma-tion about group generic func-tions; [][]Meth-
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 []\T1/pcr/m/n/9 ## vector.  The next method will always be the default, usuall
y a primitive.[] 
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 []\T1/pcr/m/n/9 ## For arithmetic and one rnum with anything, callNextMethod w
ith no arguments[] 
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 []\T1/pcr/m/n/9 ## Simple examples to illustrate callNextMethod with and witho
ut arguments[] 
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Overfull \hbox (25.98041pt too wide) in paragraph at lines 637--637
 []\T1/pcr/m/n/9 ## call f() with 2 arguments: callNextMethod passes both to th
e default method[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 640--640
 []\T1/pcr/m/n/9 ## call f() with 1 argument:  the default "B0" is not passed b
y callNextMethod[] 
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 []\T1/pcr/m/n/9 ## uses the class of the *argument* to consistently select the
 "B0" method[] 
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 []\T1/pcr/m/n/9 ## Although the argument here is numeric, it\TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 s still the "B0" method that\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s called[
] 
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 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i), sum(1:10, 1+1i))) # the "N
umber" method[] 
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 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i, TRUE), c(1:10, 1+1i, TRUE))
) # the default[] 
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Underfull \hbox (badness 10000) in paragraph at lines 1980--1985
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/pcr/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/pcr/m/n/10 where =
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[]\T1/ptm/m/n/10 To see the ac-tual ta-ble (an [][][]\T1/pcr/m/n/10 environment
[][][][]\T1/ptm/m/n/10 ) used for meth-ods dis-patch, call
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/pcr/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 Object of class []\T1/pcr/m/n/10 "optionalMethod" []\T1/ptm/m/
n/10 (a union of classes []\T1/pcr/m/n/10 "function" []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/10 removeMethods(f, where = topenv(parent.frame()), all = missin
g(where))[] 
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 []\T1/pcr/m/n/9 ## get the function "myFun" -- throw an error if 0 or > 1 vers
ions visible:[] 
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[]\T1/ptm/m/n/10 Function []\T1/pcr/m/n/10 implicitGeneric() []\T1/ptm/m/n/10 r
e-turns the im-plicit generic ver-sion,
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[]\T1/pcr/m/n/10 setGenericImplicit() []\T1/ptm/m/n/10 turns a generic im-plici
t, []\T1/pcr/m/n/10 prohibitGeneric() []\T1/ptm/m/n/10 pre-vents
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[]\T1/ptm/m/n/10 For a class (or class def-i-ni-tion, see [][][]\T1/pcr/m/n/10 
getClass[][][] []\T1/ptm/m/n/10 and the de-scrip-tion of class
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[]
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[] \T1/pcr/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude =
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[]\T1/pcr/m/n/10 setMethod("plot", c("Pos", "missing"), function(x, y, ...) {
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[]\T1/pcr/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
,
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[]\T1/ptm/m/n/10 A call to [][][]\T1/pcr/m/n/10 selectSuperClasses[][][](cl) []
\T1/ptm/m/n/10 re-turns a list of su-per-classes, sim-i-larly to
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 []\T1/pcr/m/n/10 makeClassRepresentation(name, slots=list(), superClasses=char
acter(), 
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 []                        \T1/pcr/m/n/10 prototype=NULL, package, validity, ac
cess,[] 
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 []\T1/pcr/m/n/10 method.skeleton(generic, signature, file, external = FALSE, w
here) 
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[]\T1/ptm/m/n/10 For ad-di-tional in-for-ma-tion see doc-u-men-ta-tion for the 
im-por-tant steps: ([][][]\T1/pcr/m/n/10 setMethod[][][]()[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 In prin-ci-ple, a generic func-tion could be any func-tion tha
t eval-u-ates a call to
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 []\T1/pcr/m/n/9 f3 <- function(x)UseMethod("f3") # an S3 generic to illustrate
 inheritance[] 
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 []\T1/pcr/m/n/9 stopifnot(identical(abs(y), abs(x))) # (version 2.9.0 or earli
er fails here)[] 
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 []\T1/pcr/m/n/9 ## The S3 method for classA and the closest inherited S3 metho
d for classB[] 
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[]\T1/pcr/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...)
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 $initialize() []\T1/p
tm/m/n/10 is equiv-a-lent to in-vok-ing the method
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[]\T1/ptm/m/n/10 Typically, a spe-cial-ized []\T1/pcr/m/n/10 $initialize() []\T
1/ptm/m/n/10 method car-ries out its own com-pu-ta-tions,
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\T1/ptm/m/n/10 then in-vokes []\T1/pcr/m/n/10 $initFields() []\T1/ptm/m/n/10 to
 per-form stan-dard ini-tial-iza-tion, as shown in the
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[]\T1/ptm/m/n/10 This method is equiv-a-lent to call-ing the gen-er-a-tor func-
tion re-turned by
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[]\T1/ptm/m/n/10 Reference classes can have va-lid-ity meth-ods in the same sen
se as any S4 class (see
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[][][]\T1/pcr/m/n/10 setValidity[][][][]\T1/ptm/m/n/10 ). Such meth-ods are of-
ten a good idea; they will be called by call-ing
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
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<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
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 []\T1/pcr/m/n/10 ## Create a new object from the class or use the replacement 
version of as().[] 
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 []\T1/pcr/m/n/9 fit <- lm(sepal ~ Petal.Length + Petal.Width + Species, data =
 datasets::iris)[] 
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 []\T1/pcr/m/n/9 myReg <- setClass("myReg", slots = c(title = "character"), con
tains = "mlm")[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
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<to be read again> 
                   \relax 
l.7232 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7235 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
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l.7237 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
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[]\T1/pcr/m/n/10 "abs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sign"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "sqrt"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ceiling"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "floor"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trunc"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cummax"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "acosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "asin"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "asinh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "atan"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "atanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "exp"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expm1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "c
os"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3209) in paragraph at lines 7312--7324
[]\T1/pcr/m/n/10 "cosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cospi"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "sin"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sinh"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "sinpi"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tan"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanp
i"[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 1694) in paragraph at lines 7475--7477
[]\T1/ptm/m/n/10 name of the class or (more ef-fi-ciently) the class def-i-ni-t
ion ob-ject (see
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[]\T1/ptm/m/n/10 The typ-i-cal user level func-tion is []\T1/pcr/m/n/10 selectS
uperClasses() []\T1/ptm/m/n/10 which calls
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 []\T1/pcr/m/n/9 selectSuperClasses("C", dropVirtual=TRUE, directOnly=FALSE)# d
itto w/o "Root"[] 
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 []\T1/pcr/m/n/10 setGroupGeneric(name, def= , group=list(), valueClass=charact
er(), 
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 []      \T1/pcr/m/n/10 by = character(), where = topenv(parent.frame()), class
Def =,[] 
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 []\T1/pcr/m/n/9 ## "trackMultiCurve", by making the y, smooth slots into 1-col
umn matrices[] 
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 []  \T1/pcr/m/n/9 setLoadAction(function(ns) assign("myCount", 0, envir = ns),
 "setCount")[] 
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 []\T1/pcr/m/n/9 ## Using a short form for the signature, which matches like fo
rmal arguments[] 
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 []\T1/pcr/m/n/9 ## Define a new generic function to compute the residual degre
es of freedom[] 
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/pcr/m/n/10 https : / / johnmchambers . su .
[1298]
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[]\T1/ptm/m/n/10 Object of the orig-i-nal class; e.g., []\T1/pcr/m/n/10 "functi
on" []\T1/ptm/m/n/10 for class
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
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[]\T1/pcr/m/n/10 "functionWithTrace" []\T1/ptm/m/n/10 ex-tends []\T1/pcr/m/n/10
 "function"[]\T1/ptm/m/n/10 . Each of the spe-cific classes ex-tends
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[1302]) (./parallel-pkg.tex
Chapter 8.
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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/p
cr/m/n/10 "L\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
[1303]
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[]\T1/ptm/m/n/10 a vec-tor for []\T1/pcr/m/n/10 clusterApply []\T1/ptm/m/n/10 a
nd []\T1/pcr/m/n/10 clusterApplyLB[]\T1/ptm/m/n/10 , a ma-trix for
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[]\T1/ptm/m/n/10 Two ex-cep-tions: []\T1/pcr/m/n/10 parLapply []\T1/ptm/m/n/10 
has ar-gu-ment []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 not []\T1/pcr/m/n/10 x []\T1
/ptm/m/n/10 for con-sis-tency with [][][]\T1/pcr/m/n/10 lapply[][][][]\T1/ptm/m
/n/10 , and
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
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[]\T1/ptm/m/n/10 Character vec-tor of ad-di-tional ar-gu-ments for []\T1/pcr/m/
n/10 Rscript []\T1/ptm/m/n/10 such as
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[]\T1/pcr/m/n/10 mcfork []\T1/ptm/m/n/10 re-turns an ob-ject of the class []\T1
/pcr/m/n/10 "childProcess" []\T1/ptm/m/n/10 to the mas-ter and of class
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[]\T1/pcr/m/n/10 "masterProcess" []\T1/ptm/m/n/10 to the child: both the classe
s in-herit from class []\T1/pcr/m/n/10 "process"[]\T1/ptm/m/n/10 . If
[1314]
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 []         \T1/pcr/m/n/10 mc.cleanup = TRUE, mc.allow.recursive = TRUE, affini
ty.list = NULL)[] 
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 []\T1/pcr/m/n/9 mclapply(list(A, A, A), first, mc.preschedule = FALSE, affinit
y.list = affL)[] 
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 []\T1/pcr/m/n/9 # To optimize the overall execution time elements of X are sch
eduled to suitable CPUs[] 
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Underfull \hbox (badness 5388) in paragraph at lines 1182--1187
[]\T1/pcr/m/n/10 mcparallel []\T1/ptm/m/n/10 re-turns an ob-ject of the class [
]\T1/pcr/m/n/10 "parallelJob" []\T1/ptm/m/n/10 which in-her-its from
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[]\T1/ptm/m/n/10 The be-haviour with []\T1/pcr/m/n/10 mc.set.seed = TRUE []\T1/
ptm/m/n/10 is dif-fer-ent only if
[1320]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1242--1242
 []\T1/pcr/m/n/9 mccollect(p, wait = FALSE, 10) # will retrieve the result (sin
ce it\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s fast)[] 
[1321]
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 []                 \T1/pcr/m/n/9 as.integer(runif(N, 1, 12)), as.integer(runif
(N, 1, 28)))[] 
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 []\T1/pcr/m/n/9 system.time(c <- unlist(mclapply(dates, as.POSIXct,  format = 
"%Y-%m-%d")))[] 
Underfull \hbox (badness 1577) in paragraph at lines 1400--1403
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/pcr/m/n/10 
.Random.seed []\T1/ptm/m/n/10 when the
[1323]
Underfull \hbox (badness 3375) in paragraph at lines 1447--1449
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 nextRNGStream []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 nextRNGSubStream[]\T1/ptm/m/n/10 , a value which can be as-signed to
[1324]
[1325]) (./splines-pkg.tex
[1326]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/pcr/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
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 []\T1/pcr/m/n/9 ispl <- polySpline(interpSpline( weight ~ height,  women, bSpl
ine = TRUE))[] 
[1335]
Underfull \hbox (badness 1043) in paragraph at lines 599--601
[]\T1/ptm/m/n/10 An in-te-ger be-tween 0 and []\T1/pcr/m/n/10 splineOrder(objec
t) - 1 []\T1/ptm/m/n/10 spec-i-fy-ing the
[1336]
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Overfull \hbox (25.98041pt too wide) in paragraph at lines 713--713
 []\T1/pcr/m/n/9 Matrix::drop0(zapsmall(6*splineDesign(knots = 1:40, x = 4:37, 
sparse = TRUE)))[] 
[1338]
[1339]
[1340]) (./stats-pkg.tex
Chapter 10.
[1341]
Underfull \hbox (badness 1077) in paragraph at lines 71--74
[]\T1/pcr/m/n/10 .MFclass() []\T1/ptm/m/n/10 re-turns a char-ac-ter string, one
 of []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ordered"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "factor"[]\T1/ptm/m/n/10 ,
Overfull \hbox (69.18036pt too wide) in paragraph at lines 91--91
 []\T1/pcr/m/n/9 (xl <- .getXlevels(terms(mf), mf)) # a list with one entry " $
 Species" with 3 levels:[] 
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 []  \T1/pcr/m/n/9 identical(.getXlevels(terms(mc), mc), xl[0]) # a empty named
 list, as no factors[] 
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 []\T1/pcr/m/n/9 add1(glm.D93, scope = ~outcome*treatment, test = "Rao") ## Pea
rson Chi-square[] 
[1347]
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 []\T1/pcr/m/n/10 addmargins(A, margin = seq_along(dim(A)), FUN = sum, quiet = 
FALSE) 
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Underfull \hbox (badness 1024) in paragraph at lines 901--903
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/pcr/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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Overfull \hbox (12.78088pt too wide) in paragraph at lines 1645--1645
 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
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 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
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 []                 \T1/pcr/m/n/9 approx(xn, yn, xout=xout, method=M, rule=R, n
a.rm=na.)$y),[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 1807--1807
 []\T1/pcr/m/n/9 (amy <- approx(x, y, xout = x)$y) # warning, can be avoided by
 specifying \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ties=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[
] 
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 []\T1/pcr/m/n/10 ARMAacf(ar = numeric(), ma = numeric(), lag.max = r, pacf = F
ALSE) 
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 []\T1/pcr/m/n/9 lines(ave(breaks, wool, tension, FUN = median), type = "s", co
l = "green")[] 
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Underfull \hbox (badness 10000) in paragraph at lines 3285--3287
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Bartlett test of homo
geneity of
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 []\T1/pcr/m/n/10 pbeta(q, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
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 []\T1/pcr/m/n/10 qbeta(p, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
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Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3674.
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 []\T1/pcr/m/n/9 plot (k, dbinom(k, n, pi/10, log = TRUE), type = "l", ylab = "
log density",[] 
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 []\T1/pcr/m/n/10 Box.test(x, lag = 1, type = c("Box-Pierce", "Ljung-Box"), fit
df = 0) 
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 []\T1/pcr/m/n/10 pcauchy(q, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
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 []\T1/pcr/m/n/10 qcauchy(p, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
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 []\T1/pcr/m/n/9 chisq.test(x, p = p)            #               maybe doubtful
, but is ok![] 
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 []  \T1/pcr/m/n/9 plot(pp, sort(pchisq(rr <- rchisq(n, df = df, ncp = L), df =
 df, ncp = L)),[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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 []\T1/pcr/m/n/10 confint(object, parm, level = 0.95, trace = FALSE, test=c("LR
T", "Rao"), ...)[] 
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 []\T1/pcr/m/n/9 constrOptim(c(-1.2,0.9), fr, grr, ui = rbind(c(-1,0), c(0,-1))
, ci = c(-1,-1))[] 
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 []\T1/pcr/m/n/9 constrOptim(c(.5,0), fr, grr, ui = rbind(c(-1,0), c(1,-1)), ci
 = c(-0.9,0.1))[] 
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 []\T1/pcr/m/n/9 ## using sparse contrasts: % useful, once model.matrix() works
 with these :[] 
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 []\T1/pcr/m/n/10 convolve(x, y, conj = TRUE, type = c("circular", "open", "fil
ter")) 
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter string giv-ing a method for com-put-i
ng co-vari-ances
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\T1/ptm/m/n/10 in the pres-ence of miss-ing val-ues. This must be (an ab-bre-vi
-a-tion of)
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\T1/ptm/m/n/10 one of the strings []\T1/pcr/m/n/10 "everything"[]\T1/ptm/m/n/10
 , []\T1/pcr/m/n/10 "all.obs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "complete.obs"
[]\T1/ptm/m/n/10 ,
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 []         \T1/pcr/m/n/10 exact = NULL, conf.level = 0.95, continuity = FALSE,
 ...)[] 
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 []\T1/pcr/m/n/10 cov.wt(x, wt = rep(1/nrow(x), nrow(x)), cor = FALSE, center =
 TRUE, 
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 []\T1/pcr/m/n/10 decompose(x, type = c("additive", "multiplicative"), filter =
 NULL) 
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 []\T1/pcr/m/n/10 reformulate(termlabels, response = NULL, intercept = TRUE, en
v = parent.frame())[] 
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if a box around the plot should be drawn
, see
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[]\T1/ptm/m/n/10 Objects of class []\T1/pcr/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/pcr/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing 
method
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[]\T1/pcr/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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\T1/ptm/m/n/10 has []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y [
]\T1/ptm/m/n/10 (and op-tional fur-ther ar-gu-ments) as branches. Note that be-
fore \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.1.2,
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[][][]\T1/pcr/m/n/10 dendrapply[][][] []\T1/ptm/m/n/10 for ap-ply-ing a func-ti
on to \T1/ptm/m/it/10 each \T1/ptm/m/n/10 node. [][][]\T1/pcr/m/n/10 order.dend
rogram[][][] []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/9 str(dend1, max.level = 2, last.str =  "\TS1/pcr/m/n/9 '\T1/pcr
/m/n/9 ") # only the first two sub-levels[] 
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 []\T1/pcr/m/n/9 plot(dend2$lower[[3]], nodePar = list(col = 4), horiz = TRUE, 
type = "tr")[] 
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 []\T1/pcr/m/n/9 ## merge() all parts back (using default \TS1/pcr/m/n/9 '\T1/p
cr/m/n/9 height\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 instead of original one):[] 
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 []\T1/pcr/m/n/9 plot(d3, nodePar= nP, edgePar = list(col = "gray", lwd = 2), h
oriz = TRUE)[] 
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 []\T1/pcr/m/n/9 abline(h = 1/1022, v = range(x), lty=2); axis(2, at=1/1022, "1
/(2n-2)", las=1)[] 
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 []                     \T1/pcr/m/n/9 function(k) density(kernel = k, give.Rker
n = TRUE))))[] 
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Underfull \hbox (badness 10000) in paragraph at lines 7476--7480
[]\T1/pcr/m/n/10 "maximum"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "manhattan"[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 "canberra"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "bi
nary" []\T1/ptm/m/n/10 or
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Underfull \hbox (badness 6493) in paragraph at lines 7578--7581
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/pcr/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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Underfull \hbox (badness 10000) in paragraph at lines 7715--7718
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/pcr/m/n/10 ht
tps : / / CRAN . R-[]project . org / view =
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Underfull \hbox (badness 10000) in paragraph at lines 8127--8132
[]\T1/ptm/m/n/10 Each row of the re-sult-ing ma-trix con-sists of se-quences []
\T1/pcr/m/n/10 x[t][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 x[t-1][]\T1/ptm/m/n/10 ,
 ...,
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[]\T1/ptm/m/n/10 Components of []\T1/pcr/m/n/10 control []\T1/ptm/m/n/10 can al
so be sup-plied as named ar-gu-ments to
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 []\T1/pcr/m/n/9 glm.qD93 <- glm(counts ~ outcome + treatment, d.AD, family = q
uasipoisson())[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []\T1/pcr/m/n/9 ## Not run: glm(y ~ x, family = quasi(variance = "mu^3", link 
= "log")) # fails[] 
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 []\T1/pcr/m/n/9 glm(y ~ x, family = quasi(variance = "mu(1-mu)", link = "logit
"), start = c(0,1))[] 
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 []           \T1/pcr/m/n/9 dimnames = list(income = c("< 15k", "15-25k", "25-4
0k", "> 40k"),[] 
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 []                     \T1/pcr/m/n/9 satisfaction = c("VeryD", "LittleD", "Mod
erateS", "VeryS")))[] 
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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Fligner-Killeen test 
of homogeneity of
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Underfull \hbox (badness 6944) in paragraph at lines 10245--10251
[][][]\T1/pcr/m/n/10 ftable.formula[][][] []\T1/ptm/m/n/10 for the for-mula in-
ter-face (which al-lows a []\T1/pcr/m/n/10 data = . []\T1/ptm/m/n/10 ar-gu-ment
);
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Underfull \hbox (badness 3758) in paragraph at lines 10459--10462
[]\T1/ptm/m/n/10 See also [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or
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Overfull \hbox (6.78088pt too wide) in paragraph at lines 10704--10704
 []    \T1/pcr/m/n/10 x = FALSE, y = TRUE, singular.ok = TRUE, contrasts = NULL
, ...)[] 
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 the method to be used in fit-ting the model. The de-fault meth
od
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[]\T1/ptm/m/n/10 A spec-i-fi-ca-tion of the form []\T1/pcr/m/n/10 first:second 
[]\T1/ptm/m/n/10 in-di-cates the set of terms ob-tained by tak-
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Underfull \hbox (badness 10000) in paragraph at lines 10875--10878
[]\T1/ptm/m/n/10 The generic ac-ces-sor func-tions [][][]\T1/pcr/m/n/10 coeffic
ients[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 effects[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 fitted.values []\T1/ptm/m/n/10 and
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Underfull \hbox (badness 2142) in paragraph at lines 11092--11095
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
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Underfull \hbox (badness 1708) in paragraph at lines 11173--11177
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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Underfull \hbox (badness 10000) in paragraph at lines 11215--11221
[][][]\T1/pcr/m/n/10 glm[][][] []\T1/ptm/m/n/10 for com-put-ing []\T1/pcr/m/n/1
0 glm.obj[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 anova.glm[][][][]\T1/ptm/m/n/1
0 ; the cor-re-spond-ing \T1/ptm/m/it/10 generic \T1/ptm/m/n/10 func-tions,
Underfull \hbox (badness 1418) in paragraph at lines 11253--11258
[]\T1/pcr/m/n/10 "average" []\T1/ptm/m/n/10 (= UP-GMA), []\T1/pcr/m/n/10 "mcqui
tty" []\T1/ptm/m/n/10 (= WPGMA), []\T1/pcr/m/n/10 "median" []\T1/ptm/m/n/10 (=
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Underfull \hbox (badness 2635) in paragraph at lines 11386--11389
\T1/ptm/m/n/10 There are [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/n/10 , [][
][]\T1/pcr/m/n/10 plot[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 identify []\
T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 identify.hclust[][][][]\T1/ptm/m/n/10 )
 meth-ods and the
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Underfull \hbox (badness 1694) in paragraph at lines 11569--11572
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
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 []\T1/pcr/m/n/9 heatmap(Ca, Rowv = FALSE, symm = TRUE, RowSideColors = cc, Col
SideColors = cc,[] 
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 []            \T1/pcr/m/n/10 optim.start = c(alpha = 0.3, beta = 0.1, gamma = 
0.1),[] 
Underfull \hbox (badness 10000) in paragraph at lines 11711--11715
[]\T1/ptm/m/n/10 Character string to se-lect an []\T1/pcr/m/n/10 "additive" []\
T1/ptm/m/n/10 (the de-fault) or
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 12035--12035
 []\T1/pcr/m/n/9 identify(hci, function(k) barplot(table(iris[k,5]), col = 2:4)
, DEV.FUN = nD)[] 
[1519]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12050 \aliasA{hat}{influence.measures}{hat}
                                             
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12113--12113
 []\T1/pcr/m/n/10 cooks.distance(model, infl = lm.influence(model, do.coef = FA
LSE),[] 
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 12125--12125
 []\T1/pcr/m/n/10 hatvalues(model, infl = lm.influence(model, do.coef = FALSE),
 ...)[] 
Underfull \hbox (badness 1062) in paragraph at lines 12178--12183
[]\T1/ptm/m/n/10 The op-tional []\T1/pcr/m/n/10 infl[]\T1/ptm/m/n/10 , []\T1/pc
r/m/n/10 res []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sd []\T1/ptm/m/n/10 ar-gu-me
nts are there to en-cour-age the use of these di-
Underfull \hbox (badness 1052) in paragraph at lines 12195--12197
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists 
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 12450--12450
 []                 \T1/pcr/m/n/10 type = c("l", "p", "b", "o", "c"), legend = 
TRUE,[] 
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 []                 \T1/pcr/m/n/10 trace.label = deparse1(substitute(trace.fact
or)),[] 
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Underfull \hbox (badness 10000) in paragraph at lines 12782--12784
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/pcr/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 SSinit =
Underfull \hbox (badness 4739) in paragraph at lines 12805--12807
[]\T1/ptm/m/n/10 the es-ti-mate at time $\OML/cmm/m/it/10 t \OMS/cmsy/m/n/10 ^^
@ \OT1/cmr/m/n/10 1$ \T1/ptm/m/n/10 of the state un-cer-tainty ma-trix $\OML/cm
m/m/it/10 Q$ \T1/ptm/m/n/10 (not up-dated by
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Underfull \hbox (badness 3417) in paragraph at lines 13118--13120
[]\T1/ptm/m/n/10 an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of class []\T1/pcr/
m/n/10 "kmeans"[]\T1/ptm/m/n/10 , typ-i-cally the re-sult []\T1/pcr/m/n/10 ob [
]\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 ob <-
Underfull \hbox (badness 2894) in paragraph at lines 13124--13128
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
Underfull \hbox (badness 1038) in paragraph at lines 13124--13128
\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 "Hartigan-Wong"[]\T1/ptm/m/n/10 ): if pos-i-ti
ve (or true), trac-ing in-for-ma-tion on the
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Underfull \hbox (badness 1496) in paragraph at lines 13552--13558
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 13807--13807
 []\T1/pcr/m/n/9 lag.plot(sqrt(sunspots), set.lags = c(1:4, 9:12), pch = ".", c
ol = "gold")[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 13907--13907
 []\T1/pcr/m/n/9 dimnames(cAS) <- list(paste("it =", format(1:10)), c("intercep
t", "slope"))[] 
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Underfull \hbox (badness 4518) in paragraph at lines 13955--13960
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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Underfull \hbox (badness 10000) in paragraph at lines 14155--14159
[]\T1/ptm/m/n/10 More []\T1/pcr/m/n/10 lm() []\T1/ptm/m/n/10 ex-am-ples are ava
il-able e.g., in [][][]\T1/pcr/m/n/10 anscombe[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 attitude[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 freeny[][][]
[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 1163) in paragraph at lines 14497--14505
\T1/ptm/m/n/10 els, [][][]\T1/pcr/m/n/10 influence[][][] []\T1/ptm/m/n/10 (etc 
on that page) for re-gres-sion di-ag-nos-tics, [][][]\T1/pcr/m/n/10 weighted.re
siduals[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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 []\T1/pcr/m/n/10 plogis(q, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 14808--14808
 []\T1/pcr/m/n/10 qlogis(p, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
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 []\T1/pcr/m/n/10 plnorm(q, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 15153--15153
 []\T1/pcr/m/n/10 qlnorm(p, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
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Overfull \hbox (18.78088pt too wide) in paragraph at lines 15246--15246
 []\T1/pcr/m/n/10 lowess(x, y = NULL, f = 2/3, iter = 3, delta = 0.01 * diff(ra
nge(x))) 
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[]\T1/ptm/m/n/10 character; one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cauchit"[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 "cloglog"[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 stopifnot(all.equal(pfm, pf2)) ## was off (rel.diff. 0.0766) i
n R <= 3.5.0[] 
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 []\T1/pcr/m/n/9 a <- model.frame(cbind(ncases,ncontrols) ~ agegp + tobgp + alc
gp, data = esoph) 
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\T1/ptm/m/n/10 those spec-i-fied in []\T1/pcr/m/n/10 ... []\T1/ptm/m/n/10 which
 are re-cy-cled to the num-ber of data frame rows. Un-like
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 16564--16564
 []\T1/pcr/m/n/9 model.frame(dist ~ speed, data = cars, subset = speed < 10, z 
= log(dist))[] 
Underfull \hbox (badness 1648) in paragraph at lines 16600--16602
[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
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 []\T1/pcr/m/n/9 model.matrix(~ a + b, dd, contrasts.arg = list(a = "contr.sum"
, b = contr.poly))[] 
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 []\T1/pcr/m/n/9 m.orth <- model.matrix(~a+b, dd, contrasts.arg = list(a = "con
tr.helmert"))[] 
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 []\T1/pcr/m/n/9 stopifnot(all(na.omit(1:3) == 1:3))  # does not affect objects
 with no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] 
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 []\T1/pcr/m/n/9 persp(x, size, dnb <- outer(x, size, function(x,s) dnbinom(x, 
s, prob = 0.4)),[] 
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 []\T1/pcr/m/n/9 ## adjusting the convergence test by adding \TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 scaleOffset\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 to its denominator RSS:[]
 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []\T1/pcr/m/n/9 ## Here, requiring close convergence, must use more accurate n
umerical differentiation,[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 18214--18214
 []\T1/pcr/m/n/9 ## as this typically gives Error: "step factor .. reduced belo
w \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 minFactor\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 .."[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 18218--18218
 []\T1/pcr/m/n/9 ## central differencing works here typically (PR#18165: not co
nverging on *some*):[] 
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 []\T1/pcr/m/n/9 ctr2 <- nls.control(nDcentral=TRUE, tol = 8e-8, # <- even smal
ler than above[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 18222--18222
 []        \T1/pcr/m/n/9 (grepl("^aarch64.*linux", R.version$platform) && grepl
("^NixOS", osVersion)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 18254--18254
 []              \T1/pcr/m/n/9 start = list(a = rep(b[2], 21), b = rep(b[3], 21
), th = b[1]))[] 
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 []\T1/pcr/m/n/9 DN.srt <- sortedXyData(expression(log(conc)), expression(densi
ty), DNase.2)[] 
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 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 18524--18524
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
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 []             \T1/pcr/m/n/10 eps = .Machine$double.eps ^ (1/if(central) 3 els
e 2), central = FALSE)[] 
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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 1661) in paragraph at lines 19073--19077
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
Underfull \hbox (badness 1478) in paragraph at lines 19081--19085
\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 control$trace []\T1/ptm/m/n/10 is pos-i-tive
. De-faults to ev-ery 10 it-er-a-tions for []\T1/pcr/m/n/10 "BFGS" []\T1/ptm/m/
n/10 and
[1625]
Underfull \hbox (badness 2042) in paragraph at lines 19139--19141
[]\T1/ptm/m/n/10 indicates an er-ror from the []\T1/pcr/m/n/10 "L-BFGS-B" []\T1
/ptm/m/n/10 method; see com-po-nent
[1626]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 19245--19245
 []      \T1/pcr/m/n/9 lower = rep(2, 25), upper = rep(4, 25)) # par[24] is *no
t* at boundary[] 
[1627]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19288--19288
 []     \T1/pcr/m/n/9 main = "initial solution of traveling salesman problem", 
axes = FALSE)[] 
Overfull \hbox (123.1803pt too wide) in paragraph at lines 19306--19306
 []\T1/pcr/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 
Overfull \hbox (96.18033pt too wide) in paragraph at lines 19309--19309
 []\T1/pcr/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 19329--19329
 []\T1/pcr/m/n/10 optimize(f, interval, ..., lower = min(interval), upper = max
(interval), 
[1628]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 19332--19332
 []\T1/pcr/m/n/10 optimise(f, interval, ..., lower = min(interval), upper = max
(interval),[] 
Underfull \hbox (badness 2564) in paragraph at lines 19367--19378
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 f []\T1/ptm/m/n/10 is never eva
l-u-ated at two points closer to-gether than $\OML/cmm/m/it/10 ^^O$$\OMS/cmsy/m
/n/10 j\OML/cmm/m/it/10 x[]\OMS/cmsy/m/n/10 j \OT1/cmr/m/n/10 + (\OML/cmm/m/it/
10 tol=\OT1/cmr/m/n/10 3)$\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1082) in paragraph at lines 19367--19378
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 ^^O$ \T1/ptm/m/n/10 is ap-prox-i-mately 
[]\T1/pcr/m/n/10 sqrt([][].Machine[][][]$double.eps) []\T1/ptm/m/n/10 and $\OML
/cmm/m/it/10 x[]$ \T1/ptm/m/n/10 is the fi-nal ab-scissa
[1629]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19430--19430
 []\T1/pcr/m/n/9 f  <- function(x) ifelse(x > -1, ifelse(x < 4, exp(-1/abs(x - 
1)), 10), 10)[] 
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[1631]
[1632]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19660--19660
 []\T1/pcr/m/n/9 matplot(p, p.adj, ylab="p.adjust(p, meth)", type = "l", asp = 
1, lty = 1:6,[] 
[1633]
[1634]
Underfull \hbox (badness 1337) in paragraph at lines 19771--19774
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1638]
[1639]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 20089--20089
 []      \T1/pcr/m/n/10 par.fit = list(col = "red", cex = 1.5, pch = 13, lwd = 
1.5),[] 
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[1641]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 20176--20176
 []       \T1/pcr/m/n/10 expression("Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s dist
 vs Leverage* " * h[ii] / (1 - h[ii]))),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 20178--20178
 []              \T1/pcr/m/n/10 panel.smooth(x, y, iter=iter.smooth, ...) else 
points,[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 20180--20180
 []     \T1/pcr/m/n/10 ask = prod(par("mfcol")) < length(which) && dev.interact
ive(),[] 
[1642]
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/pcr/m/n/10 "bottomleft", legend = "Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s di
stance", lty = cook.lty,
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/pcr/m/n/10 col = cook.col, text.col = cook.col, bty = "n", x.intersp
Underfull \hbox (badness 10000) in paragraph at lines 20248--20254
[]\T1/ptm/m/n/10 the num-ber of ro-bust-ness it-er-a-tions, the ar-gu-ment []\T
1/pcr/m/n/10 iter []\T1/ptm/m/n/10 in
Underfull \hbox (badness 10000) in paragraph at lines 20259--20262
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 1 or 2, to be used in []\T1/pcr/m
/n/10 ylim <-
[1643]
[1644]
[1645]
[1646]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 20526--20526
 []\T1/pcr/m/n/9 nlmod <- nls(y ~  Const + A * exp(B * x), start=list(Const=100
, A=10, B=1))[] 
[1647]
[1648]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 20657--20657
 []                    \T1/pcr/m/n/10 main = NULL, ci.col = "blue", ci.lty = 3,
 ...)[] 
[1649]
Underfull \hbox (badness 1194) in paragraph at lines 20667--20670
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1650]
Underfull \hbox (badness 1107) in paragraph at lines 20725--20727
[]\T1/ptm/m/n/10 numeric vec-tor of ab-scissa val-ues at which to eval-u-ate []
\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . De-faults to
Overfull \hbox (20.58041pt too wide) in paragraph at lines 20780--20780
 []\T1/pcr/m/n/9 plot(sfun.2);plot(sfun.2, xval = tt, add = TRUE, col = "orange
") # all colors[] 
[1651]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 20787--20787
 []\T1/pcr/m/n/9 legend(2.5, 1.9, paste("f =", c(0, 0.2, 1)), col = 1:3, lty = 
1, y.intersp = 1)[] 
[1652]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 20881--20881
 []\T1/pcr/m/n/9 title("plot(ts(..), axes=FALSE, ann=FALSE, frame.plot=TRUE, ma
r..., oma...)")[] 
[1653]
[1654]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 21009--21009
 []    \T1/pcr/m/n/9 ppois(10*(15:25), lambda = 100, lower.tail = FALSE)  # no 
cancellation[] 
[1655]
Underfull \hbox (badness 7740) in paragraph at lines 21072--21074
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 "Comparison of
[1656]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 21120--21120
 []\T1/pcr/m/n/10 poly(x, ..., degree = 1, coefs = NULL, raw = FALSE, simple = 
FALSE) 
Underfull \hbox (badness 10000) in paragraph at lines 21176--21178
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 poly(*, simple=TRUE)[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 polym(*, coefs=<non-NULL>)[]\T1/ptm/m/n/10 , and
[1657]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 21213--21213
 [] \T1/pcr/m/n/9 zm <- zapsmall(polym (    1:4, c(1, 4:6),  degree = 3)) # or 
just poly():[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 21218--21218
 []\T1/pcr/m/n/9 ## poly(<matrix>, df) --- used to fail till July 14 (vive la F
rance!), 2017:[] 
[1658]
[1659]
[1660]
[1661]
[1662]
[1663]
[1664]
[1665]
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[1669]
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Overfull \hbox (58.38037pt too wide) in paragraph at lines 22072--22072
 []          \T1/pcr/m/n/9 all.equal(pz3$sdev, pZ$sdev, tolerance = 1e-15)) # e
xactly equal typically[] 
[1671]
Underfull \hbox (badness 6859) in paragraph at lines 22139--22146
[][][]\T1/pcr/m/n/10 predict.glm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
redict.lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.loess[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.nls[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 predict.poly[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 22150--22156
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/pcr/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1672]
[1673]
[1674]
[1675]
[1676]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 22438--22438
 []        \T1/pcr/m/n/10 rankdeficient = c("warnif", "simple", "non-estim", "N
A", "NAwarn"),[] 
Underfull \hbox (badness 10000) in paragraph at lines 22464--22467
[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string
 spec-i-fy-ing what should hap-pen in the
Underfull \hbox (badness 10000) in paragraph at lines 22464--22467
\T1/ptm/m/n/10 case of a rank de-fi-cient model, i.e., when []\T1/pcr/m/n/10 ob
ject$rank <
[1677]
Underfull \hbox (badness 5832) in paragraph at lines 22469--22474
\T1/ptm/m/n/10 cases, i.e., vec-tors not in the same pre-dic-tor sub-space as t
he
Underfull \hbox (badness 8151) in paragraph at lines 22469--22474
\T1/ptm/m/n/10 orig-i-nal data (with tol-er-ance []\T1/pcr/m/n/10 tol[]\T1/ptm/
m/n/10 ). In that case, the non-
Underfull \hbox (badness 1184) in paragraph at lines 22469--22474
\T1/ptm/m/n/10 estimable in-dices are also re-turned as at-tribute []\T1/pcr/m/
n/10 "non-estim" []\T1/ptm/m/n/10 (see
[1678]
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[1682]
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[1684]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 22937--22937
 []         \T1/pcr/m/n/10 subset = rep_len(TRUE, nrow(as.matrix(x))), fix_sign
 = TRUE, ...)[] 
[1685]
[1686]
[1687]
[1688]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 23221--23221
 []             \T1/pcr/m/n/10 has.Pvalue = nc >= 4L && length(cn <- colnames(x
)) &&[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 23222--23222
 []                          \T1/pcr/m/n/10 substr(cn[nc], 1L, 3L) %in% c("Pr("
, "p-v"),[] 
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[1695]
Underfull \hbox (badness 1337) in paragraph at lines 23626--23632
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1696]
[1697]
[1698]
[1699]
[1700]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 23938--23938
 []\T1/pcr/m/n/9 with(d, qqplot(Female, Male, pch = 19, xlim = c(-31, 31), ylim
 = c(-31, 31),[] 
[1701]
[1702]
[1703]
[1704]
Underfull \hbox (badness 10000) in paragraph at lines 24251--24253
[]\T1/ptm/m/n/10 Wicklin, R. (2017) Sam-ple quan-tiles: A com-par-i-son of 9 de
f-i-ni-tions;
Underfull \hbox (badness 10000) in paragraph at lines 24251--24253
\T1/ptm/m/n/10 SAS Blog. [][]$\T1/pcr/m/n/10 https : / / blogs . sas . com / co
ntent / iml / 2017 / 05 / 24 /
Underfull \hbox (badness 10000) in paragraph at lines 24254--24255
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _
[1705]
[1706]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 24365--24365
 []       \T1/pcr/m/n/10 method = c("non.compact", "row.compact", "col.compact"
, "compact"),[] 
[1707]
Underfull \hbox (badness 1028) in paragraph at lines 24423--24426
[]\T1/ptm/m/n/10 further ar-gu-ments to be passed to or from meth-ods; for []\T
1/pcr/m/n/10 write() []\T1/ptm/m/n/10 and
[1708]
[1709]
Underfull \hbox (badness 10000) in paragraph at lines 24538--24541
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
Underfull \hbox (badness 7099) in paragraph at lines 24593--24595
[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 reorder[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
[1710]
Underfull \hbox (badness 7099) in paragraph at lines 24657--24659
[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 relevel[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
[1711]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 24692--24692
 []\T1/pcr/m/n/9 bymedianR <- with(InsectSprays, reorder(spray, count, median, 
decreasing=TRUE))[] 
[1712]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 24768--24768
 []\T1/pcr/m/n/9 plot(reorder(dd, 10:1, agglo.FUN = mean), main = "reorder(dd, 
10:1, mean)")[] 
[1713]
[1714]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 24885--24885
 []\T1/pcr/m/n/10 #         varying = ___,  # list / matrix / vector (use with 
care)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 24886--24886
 []\T1/pcr/m/n/10 #         v.names = ___,  # vector of variable names in long 
format[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 24887--24887
 []\T1/pcr/m/n/10 #         timevar, times, # name / values of constructed time
 variable[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 24888--24888
 []\T1/pcr/m/n/10 #         idvar, ids)     # name / values of constructed id v
ariable[] 
[1715]
[1716]
Underfull \hbox (badness 10000) in paragraph at lines 25045--25050
[][][]\T1/pcr/m/n/10 stack[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 aperm[]
[][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 relist[][][] []\T1/ptm/m/n/10 for r
e-shap-ing the re-sult of [][][]\T1/pcr/m/n/10 unlist[][][][]\T1/ptm/m/n/10 . [
][][]\T1/pcr/m/n/10 xtabs[][][] []\T1/ptm/m/n/10 and
Underfull \hbox (badness 2495) in paragraph at lines 25045--25050
[][][]\T1/pcr/m/n/10 as.data.frame.table[][][] []\T1/ptm/m/n/10 for cre-at-ing 
con-tin-gency ta-bles and con-vert-ing them back to
[1717]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 25056--25056
 []\T1/pcr/m/n/9 ## long to wide (direction = "wide") requires idvar and timeva
r at a minimum[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 25057--25057
 []\T1/pcr/m/n/9 reshape(Indometh, direction = "wide", idvar = "Subject", timev
ar = "time")[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 25076--25076
 []\T1/pcr/m/n/9 reshape(df, timevar = "visit", idvar = "id", direction = "wide
", v.names = "x")[] 
[1718]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 25181--25181
 []       \T1/pcr/m/n/10 na.action = c("+Big_alternate", "-Big_alternate", "na.
omit", "fail"),[] 
[1719]
Underfull \hbox (badness 1033) in paragraph at lines 25224--25230
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
Underfull \hbox (badness 10000) in paragraph at lines 25245--25248
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/pcr/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/pcr/m/n/10 y[j] =
[1720]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 25323--25323
 []\T1/pcr/m/n/9 plot(myNHT, type = "b", ylim = c(48, 60), main = "Running Medi
ans Example")[] 
[1721]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 25349--25349
 []\T1/pcr/m/n/9 ## An example with initial NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s -
 used to fail badly (notably for "Turlach"):[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 25361--25361
 []\T1/pcr/m/n/9 matplot(y = cbind(x15, rT15), type = "b", ylim = c(1,9), pch=1
:5, xlab = NA,[] 
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[1726]
[1727]
[1728]
Underfull \hbox (badness 6268) in paragraph at lines 25820--25825
[][][]\T1/pcr/m/n/10 SSasympOrig[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 S
Sbiexp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfol[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 SSfpl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSgo
mpertz[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSlogis[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 SSmicmen[][][][]\T1/ptm/m/n/10 ,
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[1731]
[1732]
Underfull \hbox (badness 1867) in paragraph at lines 26030--26032
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to
Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
[]\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 PP
Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
\T1/pcr/m/n/10 <- sum(!is.na([][]coef[][][](object))) []\T1/ptm/m/n/10 -- where
 in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was
Overfull \hbox (20.58041pt too wide) in paragraph at lines 26088--26088
 []\T1/pcr/m/n/9 sigma(lm1) # ~= 7.165  = "Residual standard error"  printed fr
om summary(lm1)[] 
[1733]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 26095--26095
 []\T1/pcr/m/n/9 stopifnot(all.equal(sigma(fm.DN1), summary(fm.DN1)$sigma, tole
rance=1e-15))[] 
[1734]
[1735]
Underfull \hbox (badness 2495) in paragraph at lines 26277--26286
[]\T1/ptm/m/n/10 For an in-verse gaus-sian GLM the model as-sumed is $\OML/cmm/
m/it/10 IG\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 ^^V[]; ^^Uw[]\OT1/cmr/m/n/10 )$ \T1
/ptm/m/n/10 (see [][]$\T1/pcr/m/n/10 https : / / en .
[1736]
[1737]
[1738]
Underfull \hbox (badness 2197) in paragraph at lines 26423--26426
[]\T1/pcr/m/n/10 psmirnov []\T1/ptm/m/n/10 gives the dis-tri-bu-tion func-tion,
 []\T1/pcr/m/n/10 qsmirnov []\T1/ptm/m/n/10 gives the quan-tile func-tion, and
Overfull \hbox (24.78088pt too wide) in paragraph at lines 26443--26443
 []       \T1/pcr/m/n/10 twiceit = FALSE, endrule = c("Tukey", "copy"), do.ends
 = FALSE)[] 
Underfull \hbox (badness 1412) in paragraph at lines 26450--26452
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing the kind of smoother re-qui
red; de-faults to
[1739]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 26535--26535
 []\T1/pcr/m/n/9 matlines(cbind(smooth(x, "3R"), smooth(x, "S"), smooth(x, "3RS
S"), smooth(x)))[] 
[1740]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 26560--26560
 []\T1/pcr/m/n/10 smooth.spline(x, y = NULL, w = NULL, df, spar = NULL, lambda 
= NULL, cv = FALSE, 
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 []              \T1/pcr/m/n/10 control.spar = list(), tol = 1e-6 * IQR(x), kee
p.stuff = FALSE)[] 
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 []    \T1/pcr/m/n/10 nx <- length(x) - sum(duplicated( round((x - mean(x)) / t
ol) ))[] 
Underfull \hbox (badness 2547) in paragraph at lines 26792--26798
[]\T1/ptm/m/n/10 The de-fault []\T1/pcr/m/n/10 all.knots = FALSE []\T1/ptm/m/n/
10 and []\T1/pcr/m/n/10 nknots = .nknots.smspl[]\T1/ptm/m/n/10 , en-tails us-in
g only
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 []\T1/pcr/m/n/9 plot(dist ~ speed, data = cars, main = "data(cars)  &  smoothi
ng splines")[] 
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 []\T1/pcr/m/n/9 with(cars.spl$fit, min + range * knot[-c(1:3, nk+1 +1:3)]) # =
= unique(cars$speed)[] 
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 []\T1/pcr/m/n/10 spec.ar(x, n.freq, order = NULL, plot = TRUE, na.action = na.
fail, 
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\T1/ptm/m/n/10 This makes the spec-tral den-sity a den-sity over the range []\T
1/pcr/m/n/10 (-frequency(x)/2,
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 []          \T1/pcr/m/n/10 method = c("fmm", "periodic", "natural", "monoH.FC"
, "hyman"),[] 
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 []\T1/pcr/m/n/9 set.seed(8); x <- sort(round(rnorm(30), 1)); y <- round(sin(pi
 * x) + rnorm(30)/10, 3)[] 
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 []\T1/pcr/m/n/9 plot(x, y, main = "spline(x,y, ties=list(\"ordered\", mean))  
for when x has ties")[] 
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 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "monoH.FC")(x), add = TRUE, c
ol = 3, n = 1001)[] 
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 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "hyman")   (x), add = TRUE, c
ol = 4, n = 1001)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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Underfull \hbox (badness 2922) in paragraph at lines 27698--27703
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1757]
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 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5.2), xlim
 = c(-.3, 5),[] 
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 []                    \T1/pcr/m/n/9 {f[phi](x) == phi[1] + (phi[2]-phi[1])*~e^
{-e^{phi[3]}*~x}}))[] 
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 []         \T1/pcr/m/n/9 c(0  ,  1   ), 1, length = 0.08, angle = 25); text(0.
5, 1, quote(1))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 27748--27748
 []  \T1/pcr/m/n/9 y0 <- 1 + 4*exp(-3/4) ; t.5 <- log(2) / exp(-3/4) ; AR2 <- 3
 # (Asym + R0)/2[] 
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 []  \T1/pcr/m/n/9 axis(2, at = c(1,AR2,5), labels= expression(phi[2], frac(phi
[1]+phi[2],2), phi[1]),[] 
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[][][]\T1/pcr/m/n/10 nls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 selfStart
[][][][]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 example(SSasympOff) []\T1/ptm/m/n/10 
gives graph show-ing the []\T1/pcr/m/n/10 SSasympOff
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 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOff(xx, Asym = 5, lrc = log(
0.4), c0 = 3/4)) )[] 
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 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(-.5,6), xlim
 = c(-1, 8),[] 
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 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOrig(xx, Asym = 5, lrc = log
(log(2)))) )[] 
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 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5), xlim =
 c(-1/4, 5),[] 
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 []  \T1/pcr/m/n/9 axis(2, at = 5*c(1/2,1), labels= expression(frac(phi[1],2), 
phi[1]), pos=0, las=1)[] 
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 []       \T1/pcr/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []\T1/pcr/m/n/9 print(getInitial(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), dat
a = Indo.1),[] 
[1762]
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 []  \T1/pcr/m/n/9 legend("topright", c("y1+y2", "y1 = 3.5 * exp(-4*x)", "y2 = 
1.5 * exp(-x)"),[] 
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 []\T1/pcr/m/n/9 ## Fails by default (scaleOffset=0) on most platforms {also af
ter increasing maxiter !}[] 
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 []        \T1/pcr/m/n/9 nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, trace=TRUE)[] 
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 []            \T1/pcr/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 
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 []\T1/pcr/m/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input) - exp(-exp(lK
a)*input)) 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "A", phi[2] == "B", phi[3] == "xm
id", phi[4] == "scal")))[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []\T1/pcr/m/n/9 lines(x, do.call(SSgompertz, c(list(x=x), coef(fm1))), col = "
red", lwd=2)[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []\T1/pcr/m/n/9 ## Initial values are in fact the converged one here, "Number 
of iter...: 0" :[] 
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 []\T1/pcr/m/n/9 fm2 <- update(fm1, control=nls.control(tol = 1e-9, warnOnly=TR
UE), trace = TRUE)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28402--28402
 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "Asym", phi[2] == "xmid", phi[3] 
== "scal")))[] 
[1769]
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 []  \T1/pcr/m/n/9 segments(c(2,2.6,2.6), c(0,  2.5,3.5),   # NB.  SSlogis(x = 
xmid = 2) = 2.5[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []\T1/pcr/m/n/9 print(getInitial(rate ~ SSmicmen(conc, Vm, K), data = PurTrt),
 digits = 3)[] 
[1770]
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 []       \T1/pcr/m/n/9 ann = FALSE, axes = FALSE, main = "Parameters in the SS
micmen model")[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []\T1/pcr/m/n/9 getInitial(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
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 []\T1/pcr/m/n/9 fm1 <- nls(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
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 []\T1/pcr/m/n/9 plot(weight ~ Time, Chick.6, xlim = c(0, 21), main = "SSweibul
l() fit to Chick.6")[] 
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 []\T1/pcr/m/n/9 As <- coef(fm1)[["Asym"]]; abline(v = 0, h = c(As, As - coef(f
m1)[["Drop"]]), lty = 3)[] 
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[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.glm"[]\T1/ptm/m/
n/10 , usu-ally, a re-sult of a call to
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
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[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.nls"[]\T1/ptm/m/
n/10 , usu-ally the re-sult of a call to
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
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 []\T1/pcr/m/n/10 supsmu(x, y, wt =, span = "cv", periodic = FALSE, bass = 0, t
race = FALSE) 
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[]\T1/ptm/m/n/10 character vec-tor, one shorter than (the \T1/ptm/m/it/10 aug-m
ented\T1/ptm/m/n/10 , see []\T1/pcr/m/n/10 corr []\T1/ptm/m/n/10 be-low)
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 []\T1/pcr/m/n/9 symnum(ii, cutpoints =  2*(0:4), symbols = c(".", "-", "+", "$
"), show.max = TRUE)[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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 []\T1/pcr/m/n/9 persp(tt, ncp, ptn, zlim = 0:1, r = 2, phi = 20, theta = 200, 
main = t.tit,[] 
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 []         \T1/pcr/m/n/10 use.factor.levels = TRUE, smooth = NULL, ylim = "com
mon",[] 
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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 []\T1/pcr/m/n/9 termplot(model, partial.resid = TRUE, smooth = panel.smooth, s
pan.smth = 1/4)[] 
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 []\T1/pcr/m/n/10 terms(x, specials = NULL, abb = NULL, data = NULL, neg.out = 
TRUE,[] 
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 []\T1/pcr/m/n/10 toeplitz2(x, nrow = length(x) +1 - ncol, ncol = length(x) +1 
- nrow)[] 
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 toeplitz(x, *)[]\T1/ptm/m/n/10 : the firs
t col-umn of the Toeplitz ma-trix; for
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 []\T1/pcr/m/n/9 # Matrix of character (could also have logical, raw, complex .
.) {also warning}:[] 
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 []   \T1/pcr/m/n/9 colnames(W) <- paste0(",", if(n <= 9) 1:n else c(1:9, lette
rs[seq_len(n-9)]))[] 
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 []\T1/pcr/m/n/9 y.hat <- W. %*% y # y.hat := smoothed(y) ("mass preserving" ->
 longer than y)[] 
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 []\T1/pcr/m/n/9 plot(x,y, type="b", xlim=c(1,m)); curve(f(x), 1,n, col="gray",
 lty=2, add=TRUE)[] 
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 []   \T1/pcr/m/n/10 class = if(nseries > 1) c("mts", "ts", "matrix", "array") 
else "ts",[] 
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[]\T1/pcr/m/n/10 is.mts(x) []\T1/ptm/m/n/10 tests if an ob-ject []\T1/pcr/m/n/1
0 x []\T1/ptm/m/n/10 is a mul-ti-vari-ate time se-ries, i.e., ful-fills []\T1/p
cr/m/n/10 is.ts(x)[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/10 ptukey(q, nmeans, df, nranges = 1, lower.tail = TRUE, log.p =
 FALSE) 
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 []\T1/pcr/m/n/10 qtukey(p, nmeans, df, nranges = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
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 []        \T1/pcr/m/n/10 extendInt = c("no", "yes", "downX", "upX"), check.con
v = FALSE,[] 
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 []        \T1/pcr/m/n/10 tol = .Machine$double.eps^0.25, maxiter = 1000, trace
 = 0)[] 
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 []\T1/pcr/m/n/9 ##--- uniroot() with new interval extension + checking feature
s: --------------[] 
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 []\T1/pcr/m/n/9 ## where as  \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 extendInt="yes"\TS1
/pcr/m/n/9 '  \T1/pcr/m/n/9 simply first enlarges the search interval:[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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 []\T1/pcr/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
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 []\T1/pcr/m/n/9 wilcox.test((4:2)/10, (3:1)/10, paired=TRUE, digits.rank = 9) 
# same ties as (4:2, 3:1)[] 
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 []      \T1/pcr/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
 = getOption("ts.eps"), ...)[] 
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 []\T1/pcr/m/n/10 xtabs(formula = ~., data = parent.frame(), subset, sparse = F
ALSE, 
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 []      \T1/pcr/m/n/10 exclude = if(!addNA) c(NA, NaN), drop.unused.levels = F
ALSE)[] 
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[1844]) (./stats4-pkg.tex
Chapter 11.
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 []    \T1/pcr/m/n/9 -sum(stats::dpois(y, lambda = exp(lymax)/(1+x/exp(lxhalf))
, log = TRUE))[] 
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 []\T1/pcr/m/n/9 ## Boundary case: This works, but fails if limits are set clos
er to 0 and 1[] 
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
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[1855]) (./tcltk-pkg.tex
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Chapter 12.
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 []\T1/pcr/m/n/9 ls(envir = .TkRoot$env, all.names = TRUE) # .Tcl.args put a ca
llback ref in here[] 
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[]\T1/pcr/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
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 []\T1/pcr/m/n/9 eval.txt <- function() eval(str2lang(tclvalue(tkget(txt.w, "0.
0", "end"))))[] 
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[][][]\T1/pcr/m/n/10 select.list[][][] []\T1/ptm/m/n/10 (a text ver-sion ex-cep
t on Win-dows and the ma-cOS GUI), [][][]\T1/pcr/m/n/10 menu[][][] []\T1/ptm/m/
n/10 (whose
[1876]) (./tools-pkg.tex
Chapter 13.
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 []\T1/pcr/m/n/9 ## is used for simple print methods in R, and as prototype for
 new methods.[] 
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[]\T1/pcr/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
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 []\T1/pcr/m/n/9 assertCondition(ff(), "error", "warning") # ok (quietly, catch
ing warning)[] 
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12
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\T1/ptm/m/n/10 types of bib-li-o-graphic en-try sup-ported by [][][]\T1/pcr/m/n
/10 bibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-
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\T1/ptm/m/n/10 tines de-scribed be-low. The for-mer must be named []\T1/pcr/m/n
/10 formatArticle[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 formatBook[]\T1/ptm/m/n/10
 ,
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 []\T1/pcr/m/n/10 buildVignette(file, dir = ".", weave = TRUE, latex = TRUE, ta
ngle = TRUE, 
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[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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\T1/ptm/m/n/10 by \T1/pcr/m/n/10 \donttest\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \dont
diff \T1/ptm/m/n/10 or \T1/pcr/m/n/10 \dontshow\T1/ptm/m/n/10 , and \T1/pcr/m/n
/10 \title \T1/ptm/m/n/10 re-placed by \T1/pcr/m/n/10 \section \T1/ptm/m/n/10 o
r
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 []\T1/pcr/m/n/10 resaveRdaFiles(paths, compress = c("auto", "gzip", "bzip2", "
xz"),[] 
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 []\T1/pcr/m/n/9 bad <- is.na(res$ASCII) | res$ASCII | (res$size > 1e4 & res$co
mpress == "none")[] 
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E, ...)[] 
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 []\T1/pcr/m/n/10 check_packages_in_dir_details(dir, logs = NULL, drop_ok = TRU
E, ...)[] 
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-
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\T1/ptm/m/n/10 ing []\T1/pcr/m/n/10 summarize_check_packages_in_dir_results []\
T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 check_packages_in_dir []\T1/ptm/m/n/10 re-turns an ob-ject in-
her-it-ing from class
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[]\T1/pcr/m/n/10 codocClasses []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 codocData [
]\T1/ptm/m/n/10 re-turn ob-jects of class []\T1/pcr/m/n/10 "codocClasses" []\T1
/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 CRAN_package_db() []\T1/ptm/m/n/10 re-turns a data frame with 
char-ac-ter columns con-tain-ing most
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' meta-data for the cu
r-rent pack-ages in the CRAN pack-age repos-i-
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\T1/ptm/m/n/10 tory, in-clud-ing in par-tic-u-lar the De-scrip-tion and Main-ta
iner in-for-ma-tion not pro-vided by
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/pcr/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
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 []              \T1/pcr/m/n/10 utils::installed.packages(lib.loc, fields = "En
hances"))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
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[]\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests",
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\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor,
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<to be read again> 
                   \relax 
l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
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MD}) has been already used, duplicate ignored
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 loadPkgRdMacros []\T1/ptm/m/n/10 func-tio
n first looks for an []\T1/pcr/m/n/10 "RdMacros" []\T1/ptm/m/n/10 en-try in the
 pack-age
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[]\T1/ptm/m/n/10 Package main-tain-ers can use these func-tions to em-ploy user
 and site spe-cific com-pi-la-
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\T1/ptm/m/n/10 tion set-tings also for com-pi-la-tions not us-ing \T1/phv/m/n/1
0 R\T1/ptm/m/n/10 's mech-a-nisms (in par-tic-u-lar, cus-tom com-
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\T1/ptm/m/n/10 pi-la-tions in sub-di-rec-to-ries of `\T1/pcr/m/n/10 src\T1/ptm/
m/n/10 '), e.g., by adding con-fig-ure code call-ing \T1/phv/m/n/10 R \T1/ptm/m
/n/10 with
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\T1/ptm/m/n/10 This al-lows e.g. the trans-la-tions shipped in \T1/phv/m/n/10 R
 \T1/ptm/m/n/10 3.x.y to be up-dated to those cur-rently in
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[]\T1/pcr/m/n/10 matchConcordance []\T1/ptm/m/n/10 con-verts from out-put lo-ca
-tions to source lo-ca-tions. The
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[]\T1/ptm/m/n/10 The de-fault method of []\T1/pcr/m/n/10 as.Rconcordance []\T1/
ptm/m/n/10 searches for strings match-ing the pat-tern of
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[]\T1/pcr/m/n/10 followConcordance []\T1/ptm/m/n/10 is used when a file is tran
s-formed more than once. The first
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\T1/ptm/m/n/10 trans-for-ma-tion records a con-cor-dance in the file which is r
ead as []\T1/pcr/m/n/10 prevConcordance[]\T1/ptm/m/n/10 .
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 []\T1/pcr/m/n/10 package_dependencies(packages = NULL, db = NULL, which = "str
ong", 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
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[]\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests",
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\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor,
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 []\T1/pcr/m/n/9 myPkgs <- c("MASS", "Matrix", "KernSmooth", "class", "cluster"
, "codetools")[] 
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 []    \T1/pcr/m/n/10 align = TRUE, character_only = TRUE, include_declarations
 = TRUE)[] 
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 []  \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macros", "system
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion 3.2.0, User-d
efined macros may be given in a sep-a-rate file us-ing
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 []         \T1/pcr/m/n/10 stylesheet = file.path(R.home("doc"), "html", "R-nav
.css"),[] 
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 []         \T1/pcr/m/n/10 hooks = list(pkg_href = function(pkg) sprintf("%s.ht
ml", pkg)),[] 
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 []         \T1/pcr/m/n/10 mathjax_config = file.path(R.home("doc"), "html", "m
athjax-config.js"),[] 
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[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-
tor of links, as re-turned by
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s", "system.Rd"))[] 
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[]\T1/ptm/m/n/10 By de-fault, the tags \T1/pcr/m/n/10 \S3method\T1/ptm/m/n/10 ,
 \T1/pcr/m/n/10 \S4method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \command\T1/ptm/m/n/10
 , \T1/pcr/m/n/10 \docType\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \email\T1/ptm/m/n/10 
,
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[]\T1/ptm/m/n/10 This func-tion starts the in-ter-nal HTTP server, which runs o
n the loop-back in-ter-face
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 []                      \T1/pcr/m/n/10 types = c("examples", "tests", "vignett
es"),[] 
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 []\T1/pcr/m/n/10 testInstalledBasic(scope = c("basic", "devel", "both", "inter
net", "all"),[] 
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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 []\T1/pcr/m/n/9 (prio <- sapply(as.vector(pNms), packageDescription, fields = 
"Priority"))[] 
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/pcr/m/n/10 texi2dvi []\T1/ptm/m/n/10 5
.0 and later; []\T1/pcr/m/n/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-ti
on
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run),[] 
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[]\T1/ptm/m/n/10 optional char-ac-ter strings for the `[]\T1/pcr/m/n/10 Copyrig
ht[]\T1/ptm/m/n/10 ' and
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[]\T1/ptm/m/n/10 All ex-ist-ing files in di-rec-tory []\T1/pcr/m/n/10 po []\T1/
ptm/m/n/10 with names `\T1/pcr/m/n/10 R-\T1/ptm/m/sl/10 lang\T1/pcr/m/n/10 .po\
T1/ptm/m/n/10 ' are up-dated from
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/pcr/m/n/10 po
/\T1/ptm/m/sl/10 pkgname\T1/pcr/m/n/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. T
he
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in t
he pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 vignetteEngine[][][][]\T1/ptm/m/n/10 
, such as []\T1/pcr/m/n/10 "utils::Sweave" []\T1/ptm/m/n/10 or
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 []               \T1/pcr/m/n/10 verbose = FALSE, unpacked = FALSE, subdirs = F
ALSE,[] 
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 []               \T1/pcr/m/n/10 latestOnly = TRUE, addFiles = FALSE, rds_compr
ess = "xz",[] 
[1953]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/10 ',
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[]\T1/pcr/m/n/10 "Package"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Version"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Priority"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Depe
nds"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Imports"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 write_PACKAGES []\T1/ptm/m/n/10 scans the named di-rec-tory fo
r R pack-ages, ex-tracts in-for-ma-tion from
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\T1/ptm/m/n/10 each pack-age's `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file
, and writes this in-for-ma-tion into the `\T1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/1
0 ',
[1954]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
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\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 PACKAGES.gz\T1/ptm/m/n/10 ' files. See [][][
]\T1/pcr/m/n/10 update_PACKAGES[][][] []\T1/ptm/m/n/10 for ef-fi-ciently up-dat
-ing ex-ist-ing
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 []  \T1/pcr/m/n/9 "    stop(errorCondition(gettext(\TS1/pcr/m/n/9 '\T1/pcr/m/n
/9 needs Deep Thought\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), class=\TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 myError\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ))",[] 
[1957]) (./utils-pkg.tex
[1958]
Chapter 14.
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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 []\T1/pcr/m/n/9 find("cor", numeric = TRUE)                     # numbers with
 these names[] 
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\T1/ptm/m/n/10 are []\T1/pcr/m/n/10 c("vertical", "horizontal", "cascade", "min
imize",
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 of win-dow 
han-dles, by de-fault pro-duced by
[1965]
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 []\T1/pcr/m/n/9 # This default is useful only in SDI mode:  it will tile any F
irefox window[] 
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 []\T1/pcr/m/n/9 .arrangeWindowsDefaults <- list(c("R", "all"), pattern = c("",
 "Firefox"))[] 
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 []         \T1/pcr/m/n/10 prompts = getOption("askYesNo", gettext(c("Yes", "No
", "Cancel"))),[] 
[1966]
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[1968]
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 []\T1/pcr/m/n/10 aspell_package_R_files(dir, ignore = character(), control = l
ist(),[] 
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 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
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 []\T1/pcr/m/n/10 aspell_package_C_files(dir, ignore = character(), control = l
ist(),[] 
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 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
[1969]
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[]\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 aspell_package_Rd_files[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 a
spell_package_C_files []\T1/ptm/m/n/10 per-form spell check-
[1970]
[1971]
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[]\T1/ptm/m/n/10 A char-ac-ter ma-trix with one row per pack-age, row names the
 pack-age names and col-
[1972]
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 []\T1/pcr/m/n/9 db <- available.packages(repos = findCRANmirror("web"), filter
s = "duplicates")[] 
[1973]
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 []\T1/pcr/m/n/10 bibentry(bibtype, textVersion = NULL, header = NULL, footer =
 NULL, 
[1974]
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[][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if Bib-TeX co
de should be given ad-di-tion-ally;
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\T1/ptm/m/n/10 cur-rently ap-plies only to []\T1/pcr/m/n/10 style = "citation"[
]\T1/ptm/m/n/10 . The de-fault for
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\T1/ptm/m/n/10 the []\T1/pcr/m/n/10 print() []\T1/ptm/m/n/10 method de-pends on
 the num-ber of (bib) en-tries and
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\T1/ptm/m/n/10 For ex-am-ple, to see no Bib-TeX at all, you can change the de-f
ault by
[1975]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1976]
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[]\T1/ptm/m/n/10 The DOI ([][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Digital _ Object _
[1977]
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 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
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[]\T1/ptm/m/n/10 For ex-am-ple, sup-pose that on a data set which you know to b
e quite large the com-
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\T1/ptm/m/n/10 mand []\T1/pcr/m/n/10 data.frame(x, y, z, monday, tuesday) []\T1
/ptm/m/n/10 never re-turns. Do not re-port that
[1984]
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 []                                     \T1/pcr/m/n/9 data = infert, family = b
inomial())))[] 
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 []     \T1/pcr/m/n/10 md5sum = FALSE, digest = NULL, full.names = length(path)
 > 1,[] 
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 []\T1/pcr/m/n/10 changedFiles(before, after, path = before$path, timestamp = b
efore$timestamp,[] 
[1986]
[1987]
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 []\T1/pcr/m/n/9 snapshot <- fileSnapshot(dir, timestamp = tempfile("timestamp"
), md5sum=TRUE)[] 
[1988]
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[]\T1/pcr/m/n/10 charClass []\T1/ptm/m/n/10 was added in \T1/phv/m/n/10 R \T1/p
tm/m/n/10 4.1.0. A less di-rect way to ex-am-ine char-ac-ter classes
[1989]
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 []\T1/pcr/m/n/9 cl <- c("alnum", "alpha", "blank", "digit", "graph", "punct", 
"upper", "xdigit")[] 
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 []\T1/pcr/m/n/9 X <- as.data.frame(X); row.names(X) <- sQuote(intToUtf8(x, mul
tiple = TRUE))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2146--2146
 []\T1/pcr/m/n/9 ## How many printable characters are there? (Around 280,000 in
 Unicode 13.)[] 
[1990]
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 []\T1/pcr/m/n/10 chooseBioCmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1992]
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 []\T1/pcr/m/n/10 chooseCRANmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1993]
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[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/pcr/m/n/10 citation() []\T1/
ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print
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\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
[1994]
[1995]
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 []\T1/pcr/m/n/10 citeNatbib(keys, bib, textual = FALSE, before = NULL, after =
 NULL,[] 
[1996]
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 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
[1997]
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 []\T1/pcr/m/n/10 citEntry(entry, textVersion = NULL, header = NULL, footer = N
ULL, ...) 
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[][][]\T1/pcr/m/n/10 citation[][][] []\T1/ptm/m/n/10 for more in-for-ma-tion ab
out cit-ing R and R pack-ages and `\T1/pcr/m/n/10 CITATION\T1/ptm/m/n/10 ' file
s;
[1998]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
                                                  
Underfull \hbox (badness 1163) in paragraph at lines 2769--2771
[]\T1/ptm/m/n/10 The Win-dows clip-board of-fers data in a num-ber of for-mats:
 see e.g. [][]$\T1/pcr/m/n/10 https : / / docs .
[1999]
[2000]
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[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
[2001]
[2002]
[2003]
Underfull \hbox (badness 10000) in paragraph at lines 3083--3085
[]\T1/ptm/m/n/10 character string, in-di-cat-ing which type of pack-ages: see
[2004]
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[2007]
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[]\T1/ptm/m/n/10 To just look in the `\T1/pcr/m/n/10 data\T1/ptm/m/n/10 ' di-re
c-tory of the cur-rent work-ing di-rec-tory, set []\T1/pcr/m/n/10 package =
[2008]
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 []\T1/pcr/m/n/9 try(data(package = "rpart"), silent = TRUE) # list the data se
ts in the rpart package[] 
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 []\T1/pcr/m/n/9 data(USArrests, "VADeaths")    # load the data sets \TS1/pcr/m
/n/9 '\T1/pcr/m/n/9 USArrests\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and \TS1/pcr/m/n/9 
'\T1/pcr/m/n/9 VADeaths\TS1/pcr/m/n/9 '[] 
[2009]
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[]\T1/ptm/m/n/10 The data en-try win-dow re-sponds to X re-sources of class []\
T1/pcr/m/n/10 R_dataentry[]\T1/ptm/m/n/10 . Re-sources
[2010]
[2011]
[2012]
[2013]
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[2015]
[2016]
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 []  \T1/pcr/m/n/9 DLL.version(file.path(R.home(), "library/stats/libs", .Platf
orm$r_arch, "stats.dll"))[] 
[2017]
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[]\T1/ptm/m/n/10 Support for method []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10
 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[2018]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/pcr/m/n/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
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[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 "curl" []\T1/ptm/m/n/10 meth-ods, prox-ies can be set \T1/ptm/m/it/1
0 via \T1/ptm/m/n/10 the en-vi-ron-
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\T1/ptm/m/n/10 ment vari-ables []\T1/pcr/m/n/10 http_proxy []\T1/ptm/m/n/10 or 
[]\T1/pcr/m/n/10 ftp_proxy[]\T1/ptm/m/n/10 . See [][]$\T1/pcr/m/n/10 https : / 
/ curl . se / libcurl / c /
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\T1/ptm/m/n/10 string con-tain-ing `[]\T1/pcr/m/n/10 "Schannel"[]\T1/ptm/m/n/10
 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-
[2019]
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\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 do
wnload.file[][][] []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 Data frame columns are co-erced on in-put to \T1/ptm/m/it/10 c
har-ac-ter \T1/ptm/m/n/10 un-less nu-meric (in the sense of
[2024]
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 []        \T1/pcr/m/n/10 character.only = FALSE, give.lines = FALSE, local = F
ALSE,[] 
[2025]
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\T1/ptm/m/n/10 is saved, then ini-tial-ized to a spec-i-fied state, the ex-am-p
le is run and
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\T1/ptm/m/n/10 the (saved) state is re-stored. []\T1/pcr/m/n/10 setRNG = TRUE [
]\T1/ptm/m/n/10 sets the same state as
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[]\T1/pcr/m/n/10 R CMD [][]check[][][] []\T1/ptm/m/n/10 does for run-ning a pac
k-age's ex-am-ples. This is cur-
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\T1/ptm/m/n/10 rently equiv-a-lent to []\T1/pcr/m/n/10 setRNG = {RNGkind("defau
lt", "default",
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[]\T1/ptm/m/n/10 logical (or []\T1/pcr/m/n/10 "default"[]\T1/ptm/m/n/10 ) in-di
-cat-ing if [][][]\T1/pcr/m/n/10 devAskNewPage[][][](ask = TRUE)
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[]\T1/ptm/m/n/10 An en-try in []\T1/pcr/m/n/10 getOption("repos") []\T1/ptm/m/n
/10 named `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' which is not the de-fault
[2030]
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 []\T1/pcr/m/n/9 # Set a breakpoint in both copies of that function, assuming o
ne is in the[] 
[2032]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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 []\T1/pcr/m/n/10 ## NB: The methods for \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 data.f
rame\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 and \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 array\
TS1/pcr/m/n/10 '  \T1/pcr/m/n/10 are identical to the \TS1/pcr/m/n/10 '\T1/pcr/
m/n/10 matrix\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 one[] 
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 []\T1/pcr/m/n/10 tail(x, n = 6L, keepnums = TRUE, addrownums, ...) # exported 
as tail.matrix()[] 
[2049]
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 []    \T1/pcr/m/n/9 ## BUT if I use "useAttrib(.)", this is *not* ok, when n i
s of length 2:[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 6313--6313
 []    \T1/pcr/m/n/9 ## --- because [i,j]-indexing of data frames *also* drops 
"other" attributes ..[] 
[2051]
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 [] \T1/pcr/m/n/9 ## -> nicely formatted pdf -- including math formula -- for h
elp(dgamma):[] 
[2054]
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[]\T1/ptm/m/n/10 The post-ing guide ([][]$\T1/pcr/m/n/10 https : / / www . r-[]
project . org / posting-[]guide . html$[][]\T1/ptm/m/n/10 ), also
[2055]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-
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\T1/ptm/m/n/10 dex, `\T1/ptm/m/sl/10 R_DOC_DIR\T1/pcr/m/n/10 /html/packages.htm
l\T1/ptm/m/n/10 ', which can be re-made by
[2058]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/pcr/m/n/10 hsearch_db() []\T1/ptm/m/n/10 builds and caches the help searc
h database for sub-se-quent use by
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
[2063]
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[]\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 means to use []\T1/pcr/m/n/10 c("Depends
", "Imports", "LinkingTo",
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\T1/pcr/m/n/10 "Suggests") []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pkgs []\T1/ptm
/m/n/10 and []\T1/pcr/m/n/10 c("Depends", "Imports",
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\T1/pcr/m/n/10 "LinkingTo") []\T1/ptm/m/n/10 for added de-pen-den-cies: this in
-stalls all the pack-ages
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\T1/ptm/m/n/10 for the `[]\T1/pcr/m/n/10 --configure-args[]\T1/ptm/m/n/10 ' fla
g in the call to []\T1/pcr/m/n/10 R CMD INSTALL[]\T1/ptm/m/n/10 . If
[2064]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed to []\T1/pcr/m/n/10 R
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\T1/pcr/m/n/10 CMD INSTALL []\T1/ptm/m/n/10 for a source pack-age in-stall. E.g
., []\T1/pcr/m/n/10 c("--html",
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\T1/pcr/m/n/10 "--no-multiarch", "--no-test-load") []\T1/ptm/m/n/10 or, for ma-
cOS,
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
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[]\T1/ptm/m/n/10 further ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 downl
oad.file[][][][]\T1/ptm/m/n/10 ,
[2065]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/pcr/m/n
/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages
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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/pcr/m/n/10 type = "source" []\T1/pt
m/m/n/10 al-ways works pro-vided the pack-age con-tains no
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[]\T1/pcr/m/n/10 install.packages []\T1/ptm/m/n/10 needs to be able to com-pute
 all the de-pen-den-cies of []\T1/pcr/m/n/10 pkgs []\T1/ptm/m/n/10 from
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[][][]\T1/pcr/m/n/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pac
kages[][][][]\T1/ptm/m/n/10 ,
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 []  \T1/pcr/m/n/9 configure.args = c(RNetCDF = "--with-netcdf-include=/usr/inc
lude/udunits2"))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
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[]\T1/pcr/m/n/10 installed.packages []\T1/ptm/m/n/10 scans the `\T1/pcr/m/n/10 
DESCRIPTION\T1/ptm/m/n/10 ' files of each pack-age found along
[2068]
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 []\T1/pcr/m/n/9 plic <- installed.packages(.Library, priority = "high", fields
 = "License")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7673--7673
 []\T1/pcr/m/n/9 ## Keep packages that come with R (priority="high") and all ot
hers separate![] 
[2069]
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[]\T1/ptm/m/n/10 The ac-tual link-ing com-mand is con-structed by the ver-sion 
of []\T1/pcr/m/n/10 libtool []\T1/ptm/m/n/10 in-stalled at
[2071]
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 []\T1/pcr/m/n/9 ls.str(mode = "list")   #- what are the structured objects I h
ave defined?[] 
[2074]
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 []\T1/pcr/m/n/10 make.socket(host = "localhost", port, fail = TRUE, server = F
ALSE) 
[2076]
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[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
[2077]
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 []   \T1/pcr/m/n/10 methods(generic.function, class, all.names = FALSE, dropPa
th = FALSE)[] 
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 []                                    \T1/pcr/m/n/10 all.names = FALSE, dropPa
th = FALSE)[] 
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[]\T1/ptm/m/n/10 a sym-bol or char-ac-ter string nam-ing a class: only used if
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/pcr/m/n/10 methods(..)[]\T1/ptm
/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
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[]\T1/ptm/m/n/10 logical spec-i-fy-ing that the news should be opened in the br
owser (by
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 []\T1/pcr/m/n/9 db4 <- news(Version == "4.0.0" & grepl("^BUG", Category) & gre
pl("PR#", Text),[] 
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 []\T1/pcr/m/n/9 ## News from a date range (\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Matri
x\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 is there in a regular R installation):[] 
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 []\T1/pcr/m/n/9 ## Which categories have been in use? % R-core maybe should st
andardize a bit more[] 
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[]\T1/pcr/m/n/10 "B"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "KiB"[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 "MiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "GiB"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "TiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "PiB"[]\T1/ptm/m/
n/10 ,
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[]\T1/ptm/m/n/10 For all stan-dards, []\T1/pcr/m/n/10 units = "auto" []\T1/ptm/
m/n/10 is also al-lowed. If []\T1/pcr/m/n/10 standard =
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[]\T1/ptm/m/n/10 optionally a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/
n/10 string with an en-cod-ing for an op-tional
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tion", "Built"),[] 
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%d/%y"),[] 
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ields=date.fields))[] 
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 asDateBuilt()[]\T1/ptm/m/n/10 , a [][][]\
T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string as from
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[]\T1/pcr/m/n/10 packageVersion() []\T1/ptm/m/n/10 is a con-ve-nience short-cut
, al-low-ing things like []\T1/pcr/m/n/10 if
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[]\T1/ptm/m/n/10 If a `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the 
given pack-age is found and can suc-cess-fully be read,
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 []          \T1/pcr/m/n/9 identical(pu, packageDate("stats"))) # as "utils" an
d "stats" are[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 9103--9103
 []                                   \T1/pcr/m/n/9 # both \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 base R\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and "Built" at same time[] 
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("ok", "upgrade",
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("installed", "not
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 []       \T1/pcr/m/n/10 include = c("given", "family", "email", "role", "comme
nt"),[] 
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 []       \T1/pcr/m/n/10 braces = list(given = "", family = "", email = c("<", 
">"),[] 
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 []         \T1/pcr/m/n/9 "S original, <http://statwww.epfl.ch/davison/BMA/libr
ary.html>"),[] 
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to
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 []         \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", "
no.loss"),[] 
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 []\T1/pcr/m/n/9 dd <- read.DIF(file.path(udir, "exDIF.dif"), header = TRUE, tr
anspose = TRUE)[] 
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 []\T1/pcr/m/n/9 read.fwf(ff, widths = list(c(1,0, 2,3), c(2,2,2))) #> 1 NA 23 
456 98 76 54[] 
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 "no.loss"),[] 
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 []           \T1/pcr/m/n/10 row.names, col.names, as.is = !stringsAsFactors, t
ryLogical = TRUE,[] 
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 []           \T1/pcr/m/n/10 skip = 0, check.names = TRUE, fill = !blank.lines.
skip,[] 
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 []           \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, ski
pNul = FALSE)[] 
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[]\T1/ptm/m/n/10 Using []\T1/pcr/m/n/10 row.names = NULL []\T1/ptm/m/n/10 force
s row num-ber-ing. Miss-ing or []\T1/pcr/m/n/10 NULL
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 de-ter-m
in-ing if columns con-sist-ing en-tirely of []\T1/pcr/m/n/10 "F"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "FALSE"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "TRUE" []\T1/pt
m/m/n/10 should be con-verted to [][][]\T1/pcr/m/n/10 logical[][][][]\T1/ptm/m/
n/10 ; passed to
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 []\T1/pcr/m/n/10 readRegistry(key, hive = c("HLM", "HCR", "HCU", "HU", "HCC", 
"HPD"), 
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 []             \T1/pcr/m/n/10 maxdepth = 1, view = c("default", "32-bit", "64-
bit"))[] 
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are
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\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 HKEY_CLASSES_ROOT[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/pcr/m/n/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_USER
S[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_CURRENT_CONFIG
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 []        \T1/pcr/m/n/10 ipar <- list(mean = c(0, 1), vcov = c bind(c(1, 1), c
(1, 0))) 
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Underfull \hbox (badness 2469) in paragraph at lines 11853--11857
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2024). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
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[][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / w / index . php ? title 
= Roman _ numerals & oldid =
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 []\T1/pcr/m/n/9 as.roman(c(NA, 1:3, "", strrep("I", 1:7))) # + NA with a warni
ng for the last.[] 
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 []\T1/pcr/m/n/9 ## simple consistency checks -- arithmetic when result is in  
{1,2,..,4999} :[] 
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 []\T1/pcr/m/n/10 4. |     \-base:::tryCatchOne(expr, names, parentenv, handler
s[[1L]])[] 
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 []\T1/pcr/m/n/10 5. |       \-base:::doTryCatch(return(expr), name, parentenv,
 handler)[] 
[2133]
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[]\T1/ptm/m/n/10 The chap-ter on ``Tidy-ing and pro-fil-ing R code'' in `Writ-i
ng R Ex-ten-sions':
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 []\T1/pcr/m/n/10 Rprofmem(filename = "Rprofmem.out", append = FALSE, threshold
 = 0) 
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[]\T1/ptm/m/n/10 If `[]\T1/pcr/m/n/10 --default-packages[]\T1/ptm/m/n/10 ' is n
ot used, then []\T1/pcr/m/n/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-me
nt vari-
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\T1/ptm/m/n/10 able []\T1/pcr/m/n/10 R_SCRIPT_DEFAULT_PACKAGES[]\T1/ptm/m/n/10 
. If this is set, then it takes prece-dence over
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 []\T1/pcr/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 sessionInfo()\TS1/pcr/m/n/9 '[] 
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 []            \T1/pcr/m/n/10 restrict = c("functions", "descriptions", "news",
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 []                         \T1/pcr/m/n/10 "Rmanuals", "READMEs", "views", "vig
nettes"),[] 
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 []            \T1/pcr/m/n/10 sortby = c("score", "date:late", "date:early", "s
ubject",[] 
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 []                       \T1/pcr/m/n/10 "subject:descending", "size", "size:de
scending"),[] 
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\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 score[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 date:
late []\T1/ptm/m/n/10 for sort-ing by date with lat-est re-sults first,
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\T1/ptm/m/n/10 der, []\T1/pcr/m/n/10 subject:descending []\T1/ptm/m/n/10 for re
-verse al-pha-bet-i-cal or-der, []\T1/pcr/m/n/10 size []\T1/ptm/m/n/10 or
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 []\T1/pcr/m/n/9 fullquery <- RSiteSearch("lattice", restrict = c("vignettes","
Rfunctions"))[] 
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[]\T1/ptm/m/n/10 Character string spec-i-fy-ing whether emacs style ([]\T1/pcr/
m/n/10 "etags"[]\T1/ptm/m/n/10 ) or vi style
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / www . gnu . org / software /
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ALSE, ...)[] 
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[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 stylepath []\T1/ptm/m/n/10 i
s now taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 The use of fancy quotes (see [][][]\T1/pcr/m/n/10 sQuote[][][]
[]\T1/ptm/m/n/10 ) can cause prob-lems when set-ting \T1/phv/m/n/10 R \T1/ptm/m
/n/10 out-put in
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rent")[] 
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
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[]\T1/ptm/m/n/10 The file `\T1/pcr/m/n/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ures
 the R GUI ([]\T1/pcr/m/n/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows
 and
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[]\T1/ptm/m/n/10 At the time of writ-ing `\T1/pcr/m/n/10 Rdevga\T1/ptm/m/n/10 '
 con-fig-ured the map-ping of font num-bers to fonts, and
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[]\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in
g
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[]\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in
g
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 []\T1/pcr/m/n/9 toLatex(sI, locale = FALSE) # shortest; possibly desirable at 
end of report[] 
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[]\T1/ptm/m/n/10 Repository `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' is treated
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fix)) 
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
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[]\T1/pcr/m/n/10 getSrcFilename []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 getSrcDir
ectory []\T1/ptm/m/n/10 re-turn char-ac-ter vec-tors hold-ing the file-
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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[][][]\T1/pcr/m/n/10 options[][][]("width")[]\T1/ptm/m/n/10 ; note that this ha
s only a weak ef-fect, un-less
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[]\T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 options[][][][]\T1/ptm/m/n/10 ) whic
h de-faults to []\T1/pcr/m/n/10 "no" []\T1/ptm/m/n/10 for back com-pat-i-bil-it
y rea-sons;
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[]\T1/ptm/m/n/10 numeric or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 as by de-fau
lt, de-ter-min-ing the []\T1/pcr/m/n/10 nlines []\T1/ptm/m/n/10 ar-gu-ment to
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 []\T1/pcr/m/n/9 str(.Machine, digits.d = 20) # extra digits for identification
 of binary numbers[] 
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ng" non-ASCII:[] 
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e  1  (in UTF-8!):[] 
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[]\T1/ptm/m/n/10 Options other than []\T1/pcr/m/n/10 memory = "none" []\T1/ptm/
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[]\T1/ptm/m/n/10 The chap-ter on `Tidy-ing and pro-fil-ing R code' in `Writ-ing
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[]\T1/ptm/m/n/10 further ar-gu-ments passed to the driver's setup func-tion. Se
e
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[][][]\T1/pcr/m/n/10 RweaveLatexSetup[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/
m/n/10 RtangleSetup[][][][]\T1/ptm/m/n/10 , re-spec-tively, for the ar-gu-
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fau
lt) then the avail-able syn-tax ob-jects are con-sulted in
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\T1/ptm/m/n/10 turn, and se-lected if their []\T1/pcr/m/n/10 extension []\T1/pt
m/m/n/10 com-po-nent matches (as a reg-exp) the file
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\T1/ptm/m/n/10 name. Ob-jects []\T1/pcr/m/n/10 SweaveSyntaxNoweb []\T1/ptm/m/n/
10 (with []\T1/pcr/m/n/10 extension = "[.][rsRS]nw$"[]\T1/ptm/m/n/10 ) and
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\T1/ptm/m/n/10 si-bly use-ful val-ues in-clude `[]\T1/pcr/m/n/10 -h[]\T1/ptm/m/
n/10 ' (fol-low sym-bolic links, also `[]\T1/pcr/m/n/10 -L[]\T1/ptm/m/n/10 ' on
 some plat-forms),
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\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 --acls[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --
exclude-backups[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --exclude-vcs[]\T1/ptm/m/n
/10 ' (and sim-i-lar) and on Win-dows
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[]\T1/ptm/m/n/10 A con-ve-nient and ro-bust way to set op-tions for GNU []\T1/p
cr/m/n/10 tar []\T1/ptm/m/n/10 is via en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 is set t
o the com-mand []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment 
vari-able
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / pubs .
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\T1/pcr/m/n/10 opengroup . org / onlinepubs / 9699919799 / utilities / pax . ht
ml # tag _ 20 _ 92 _
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[]\T1/ptm/m/n/10 Download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
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\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
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[]\T1/ptm/m/n/10 by de-fault all in-stalled pack-ages, [][][]\T1/pcr/m/n/10 ins
talled.packages[][][](lib.loc =
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[]\T1/ptm/m/n/10 Arguments such as []\T1/pcr/m/n/10 destdir []\T1/ptm/m/n/10 an
d []\T1/pcr/m/n/10 dependencies []\T1/ptm/m/n/10 to be
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\T1/ptm/m/n/10 passed to [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 and []\T1/pcr/m/n/10 ignore_repo_cache[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 max_repo_cache_age []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 noCac
he []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 available.packages[][][]
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
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[]\T1/pcr/m/n/10 available = NULL []\T1/ptm/m/n/10 make a call to []\T1/pcr/m/n
/10 available.packages(contriburl =
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\T1/pcr/m/n/10 contriburl, method = method) []\T1/ptm/m/n/10 and hence by de-fa
ult fil-ters on \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion, OS type
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[]\T1/ptm/m/n/10 Take care when us-ing []\T1/pcr/m/n/10 dependencies []\T1/ptm/
m/n/10 (passed to [][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 )
 with
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[][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pa
ckages[][][][]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 ## Not run: url.show("https://www.stats.ox.ac.uk/pub/datasets/
csb/ch3a.txt") 
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[][][]\T1/pcr/m/n/10 browseVignettes[][][] []\T1/ptm/m/n/10 for an HTML-based v
i-gnette browser; [][][]\T1/pcr/m/n/10 RShowDoc[][][]("\T1/ptm/m/sl/10 basename
\T1/pcr/m/n/10 ",
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 []\T1/pcr/m/n/9 ## Note that \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 package = *\TS1/pcr
/m/n/9 ' \T1/pcr/m/n/9 is much faster in the case of many installed packages:[]
 
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 []                      \T1/pcr/m/n/9 lm(weight ~ (Time + I(Time^2)) * Diet, d
ata = DAT)))[] 
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 []                 \T1/pcr/m/n/9 nls(weight ~ SSlogis(Time, Asym, xmid, scal),
 data = DD)))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the ac-tion when that menu i
s se-lected, or
[2192]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 winMenuDel []\T1/ptm/m/n/10 func-tion wil
l delete a menu and all of its items and sub-menus.
[2193]
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 []\T1/pcr/m/n/10 write.table(x, file = "", append = FALSE, quote = TRUE, sep =
 " ", 
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[]\T1/ptm/m/n/10 arguments to []\T1/pcr/m/n/10 write.table[]\T1/ptm/m/n/10 : []
\T1/pcr/m/n/10 append[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 col.names[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 sep[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dec []\T1/ptm/m/n
/10 and
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[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. []\T1/pcr/m/n/10 file =
[2196]
[2197]
[2198])
[2199]
[2200] (./KernSmooth-pkg.tex
Chapter 15.
[2201]
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 []\T1/pcr/m/n/10 bkde2D(x, bandwidth, gridsize = c(51L, 51L), range.x, truncat
e = TRUE) 
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 []\T1/pcr/m/n/10 dpill(x, y, blockmax = 5, divisor = 20, trim = 0.01, proptrun
 = 0.05, 
[2207]
[2208]
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[2210]) (./MASS-pkg.tex
Chapter 16.
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 []\T1/pcr/m/n/9 dreg <- cbind(sin = sin(2*pi*beav2$hours/24), cos = cos(2*pi*b
eav2$hours/24))[] 
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lm}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1477 ...{confint.glm}{confint-MASS}{confint.glm}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.n
ls}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1478 ...{confint.nls}{confint-MASS}{confint.nls}
                                                  
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 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", 
"F"),[] 
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 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", 
"F"),[] 
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[]\T1/ptm/m/n/10 further ar-gu-ments for []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10
 and graph-i-cal pa-ram-e-ters. Note that
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[]\T1/pcr/m/n/10 "gamma"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "geometric"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "log-normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lo
gnormal"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "negative binomi
al"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "Poisson"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
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 []            \T1/pcr/m/n/10 eps.max = .Machine$double.eps^0.25, verbose = FAL
SE, ...)[] 
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 []\T1/pcr/m/n/9 survreg(Surv(time, cens) ~ factor(pair) + treat, gehan, dist =
 "exponential")[] 
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[]\T1/ptm/m/n/10 The va-ri-ety of bar-ley ([]\T1/pcr/m/n/10 "manchuria"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "svansota"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "velv
et"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trebi" []\T1/ptm/m/n/10 and
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 []        \T1/pcr/m/n/10 col = 5, xlab = deparse(substitute(data)), bty = "n",
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 []\T1/pcr/m/n/10 lm.ridge(formula, data, subset, na.action, lambda = 0, model 
= FALSE, 
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 []\T1/pcr/m/n/10 mvrnorm(n = 1, mu, Sigma, tol = 1e-6, empirical = FALSE, EISP
ACK = FALSE) 
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 []\T1/pcr/m/n/10 negative.binomial(theta = stop("\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 theta\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 must be specified"), link = "log") 
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<to be read again> 
                   \relax 
l.6080 ...sical N, P, K Factorial Experiment}{npk}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk.1}) h
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l.6080 ...sical N, P, K Factorial Experiment}{npk}
                                                  
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 []     \T1/pcr/m/n/9 start = list(fixed=c(L75=c(48.7, -0.03), lsc=0.24)), verb
ose = TRUE)))[] 
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 []     \T1/pcr/m/n/10 dimen, abbrev = FALSE, ..., cex=0.7, type = c("std", "tr
ellis"))[] 
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 []     \T1/pcr/m/n/10 method = c("logistic", "probit", "loglog", "cloglog", "c
auchit"))[] 
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[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
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 []\T1/pcr/m/n/9 house.plr <- polr(Sat ~ Infl + Type + Cont, weights = Freq, da
ta = housing)[] 
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[]\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than 
[]\T1/pcr/m/n/10 min(p,
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 []\T1/pcr/m/n/9 fm <- lqs(stack.loss ~ ., data = stackloss, method = "S", nsam
p = "exact")[] 
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 []        \T1/pcr/m/n/10 method = c("plug-in", "predictive", "debiased", "looC
V"), ...)[] 
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<to be read again> 
                   \relax 
l.7508 ... for Profiling glm Objects}{profile.glm}
                                                  
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
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 []    \T1/pcr/m/n/10 maxit = 20, acc = 1e-4, test.vec = "resid", lqs.control =
 NULL)[] 
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[]\T1/ptm/m/n/10 A func-tion to spec-ify the ac-tion to be taken if []\T1/pcr/m
/n/10 NA[]\T1/ptm/m/n/10 s are found. The
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 []\T1/pcr/m/n/10 summary(object, method = c("XtX", "XtWX"), correlation = FALS
E, ...)[] 
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[]\T1/ptm/m/n/10 ``Fold your arms! Which is on top'' (Fac-tor, with lev-els []\
T1/pcr/m/n/10 "R on L"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "L on R"[]\T1/ptm/m/n
/10 ,
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[]\T1/ptm/m/n/10 how much the stu-dent smokes. (Fac-tor, lev-els []\T1/pcr/m/n/
10 "Heavy"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Regul" []\T1/ptm/m/n/10 (reg-u-l
arly),
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 []\T1/pcr/m/n/10 theta.md(y, mu, dfr, weights, limit = 20, eps = .Machine$doub
le.eps^0.25) 
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 []\T1/pcr/m/n/10 theta.ml(y, mu, n, weights, limit = 10, eps = .Machine$double
.eps^0.25,[] 
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 []\T1/pcr/m/n/10 theta.mm(y, mu, dfr, weights, limit = 10, eps = .Machine$doub
le.eps^0.25)[] 
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[]\T1/ptm/m/n/10 The orig-i-nal data are avail-able at [][]$\T1/pcr/m/n/10 http
s : / / lib . stat . cmu . edu / datasets / 1993 .
[2349]
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[2356]) (./Matrix-pkg.tex
Chapter 17.
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[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
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\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
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[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
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[]\T1/ptm/m/n/10 in gen-eral an ar-bi-trary num-ber of \T1/phv/m/n/10 R \T1/ptm
/m/n/10 ob-jects; here, when the first is
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\T1/ptm/m/n/10 an []\T1/pcr/m/n/10 "[][]abIndex[][][]" []\T1/ptm/m/n/10 vec-tor
, these ar-gu-ments will be con-cate-nated to a new
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal
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l.182 ...{all.equal}{all.equal-methods}{all.equal}
                                                  
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[]\T1/ptm/m/n/10 these three meth-ods are sim-ply us-ing
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[]\T1/ptm/m/n/10 There are more meth-ods, no-tably also for []\T1/pcr/m/n/10 "[
][]sparseVector[][][]"[]\T1/ptm/m/n/10 's, see
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[]\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic
 func-tion
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 []   \T1/pcr/m/n/9 band(sm5, -1, 1)# "dsyMatrix": symmetric band preserves sym
metry property[] 
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[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
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 []\T1/pcr/m/n/9 s1 <- bandSparse(13, k = -c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
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 []\T1/pcr/m/n/9 s2 <- bandSparse(13, k =  c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
[2363]
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 []\T1/pcr/m/n/9 lLis <- lapply(list(rpois(20, 2), rpois(20, 1), rpois(20, 3))[
c(1:3, 2:3, 3:2)],[] 
[2364]
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Fast version of Matrix :: .bd
iag() -- for the case of *many*  (k x k) matrices:[] 
[2365]
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @param lmat list(<mat1>, <mat
2>, ....., <mat_N>)  where each mat_j is a  k x k \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 matrix\TS1/pcr/m/n/9 '[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @return a sparse (N*k x N*k) 
matrix of class  \code{"\linkS4class{dgCMatrix}"}.[] 
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 []        \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 i :\TS1/pcr/m/n/9 ' \
T1/pcr/m/n/9 maybe there\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s a faster way (w/o matri
x indexing), but elegant?[] 
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 []        \T1/pcr/m/n/9 i = as.vector(matrix(0L:(M-1L), nrow=k)[, rep(seq_len(
N), each=k)]),[] 
[2366]
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 []\T1/pcr/m/n/9 L. <- L; L.[1:2,1] <- TRUE; L.@x[1:2] <- FALSE; L. # has "zero
s" to drop0()[] 
[2367]
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[]\T1/pcr/m/n/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more 
typ-i-cally ob-tained as the value of
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[]\T1/pcr/m/n/10 signature(from = "BunchKaufman", to = "dtrMatrix")[]\T1/ptm/m/
n/10 : re-turns a
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[]\T1/pcr/m/n/10 signature(from = "pBunchKaufman", to = "dtpMatrix")[]\T1/ptm/m
/n/10 : re-turns a
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[]\T1/pcr/m/n/10 signature(from = "p?BunchKaufman", logarithm =
[2368]
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
[2369]
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[]\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing
 from vir-tual class
[2370]
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 []\T1/pcr/m/n/9 stopifnot(all.equal(as(A, "matrix"), as(Reduce(\TS1/cmtt/m/n/9
 `\T1/pcr/m/n/9 %*%\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 , e.bk.A), "matrix")))[] 
[2371]
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ash.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2}
                                              
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                   \relax 
l.1195 \aliasA{rbind2}{cbind2-methods}{rbind2}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2.Rd
ash.methods}) has been already used, duplicate ignored
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                   \relax 
l.1204 ...s}{cbind2-methods}{rbind2.Rdash.methods}
                                                  
[2372]
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[]\T1/ptm/m/n/10 Our class def-i-ni-tion help pages men-tion-ing []\T1/pcr/m/n/
10 cbind2() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 rbind2() []\T1/ptm/m/n/10 met
h-ods:
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[]\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/pcr/m/n/10 CHMfactor []\
T1/ptm/m/n/10 is based on CHOLMOD's C-level
[2373]
[2374]
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[]\T1/pcr/m/n/10 signature(from = "CHMfactor", logarithm = "logical")[]\T1/ptm/
m/n/10 : be-
[2375]
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[]\T1/pcr/m/n/10 signature(update = ., C = ., object = "CHMfactor")[]\T1/ptm/m/
n/10 : see
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[]\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g
ithub . com / DrTimothyAldenDavis /
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\T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p
cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing
[2376]
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
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 []    \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(e.ch.A, L1 %*%
 D %*% L1.))[] 
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 []    \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(E.ch.A, L  %*%
         L. ))[] 
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 []\T1/pcr/m/n/9 u2 <- update(ch.A, t(M), mult = sqrt(2)) # updating with cross
prod(M), not M[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1625 \aliasA{chol}{chol-methods}{chol}
                                        
[2377]
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\T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt
ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and
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[]\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g
ithub . com / DrTimothyAldenDavis /
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\T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p
cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing
[2378]
[2379]
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<to be read again> 
                   \relax 
l.1854 ...sA{chol2inv}{chol2inv-methods}{chol2inv}
                                                  
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[2381]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length []\T1/pcr/m/n/10 n*n []\T1/ptm/m/
n/10 ([]\T1/pcr/m/n/10 Cholesky[]\T1/ptm/m/n/10 ) or []\T1/pcr/m/n/10 n*(n+1)/2
 []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 pCholesky[]\T1/ptm/m/n/10 ), where
Underfull \hbox (badness 1226) in paragraph at lines 2005--2008
[]\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 CholeskyFactorization[][][][]\T1/pt
m/m/n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1
/ptm/m/n/10 , by class
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[]\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T
1/pcr/m/n/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or
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[]\T1/pcr/m/n/10 signature(from = "pCholesky", to = "dtpMatrix")[]\T1/ptm/m/n/1
0 : re-turns a
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[]\T1/pcr/m/n/10 signature(from = "p?Cholesky", logarithm = "logical")[]\T1/ptm
/m/n/10 :
[2382]
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\T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt
ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and
[2383]
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
[2384]
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[]\T1/ptm/m/n/10 a [][]fi-nite[][][] num-ber. The ma-trix that is fac-tor-ized 
is []\T1/pcr/m/n/10 A + Imult *
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\T1/pcr/m/n/10 - diag(abs(A))) []\T1/ptm/m/n/10 en-sures that []\T1/pcr/m/n/10 
A + Imult * diag(nrow(A)) []\T1/ptm/m/n/10 is di-
[2385]
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[]\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing
 from vir-tual class
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\T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt
ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and
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[]\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g
ithub . com / DrTimothyAldenDavis /
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\T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p
cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing
[2386]
[2387]
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 []     \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm =  TRUE, super = FALSE, L
DL =  TRUE),[] 
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 []          \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm =  TRUE, super = FALSE, L
DL = FALSE),[] 
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 []          \T1/pcr/m/n/9 super0 = Cholesky(A4, perm =  TRUE, super =  TRUE   
          )),[] 
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 []     \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm = FALSE, super = FALSE, L
DL =  TRUE),[] 
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 []          \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm = FALSE, super = FALSE, L
DL = FALSE),[] 
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 []          \T1/pcr/m/n/9 super0 = Cholesky(A4, perm = FALSE, super =  TRUE   
          )))[] 
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 []\T1/pcr/m/n/9 rapply2 <- function(object, f, ...) rapply(object, f, , , how 
= "list", ...)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2388]
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 []          \T1/pcr/m/n/9 x = c(1, 6, 38, 10, 60, 103, -4, 6, -32, -247, -2, -
16, -128, -2, -67))[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2389]
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 []  \T1/pcr/m/n/9 show(a1 <- sparseMatrix(i= c(1:4),   j=c(2:4,1),   x = 2,   
 dimnames=dns))[] 
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 []  \T1/pcr/m/n/9 show(a2 <- sparseMatrix(i= c(1:4,4), j=c(2:4,1:2), x = TRUE,
 dimnames=dns))[] 
[2390]
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 []  \T1/pcr/m/n/9 a. <- sparseMatrix(i=4:1, j=1:4, dimnames=list(n4, n4), repr
="T") # no \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 x\TS1/pcr/m/n/9 '[] 
[2391]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colMeans}
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<to be read again> 
                   \relax 
l.2696 ...asA{colMeans}{colSums-methods}{colMeans}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colSums})
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<to be read again> 
                   \relax 
l.2704 \aliasA{colSums}{colSums-methods}{colSums}
                                                 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowMeans}
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<to be read again> 
                   \relax 
l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans}
                                                  
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<to be read again> 
                   \relax 
l.2719 \aliasA{rowSums}{colSums-methods}{rowSums}
                                                 
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sparse, i.e., i
n-her-it-ing from
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\T1/ptm/m/n/10 class [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/n/10 . 
Only ap-pli-ca-ble when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is in-her-it-ing fr
om a
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[][][]\T1/pcr/m/n/10 dimnames[][][](x) []\T1/ptm/m/n/10 are only kept (as [][][
]\T1/pcr/m/n/10 names[][][](v)[]\T1/ptm/m/n/10 ) when the re-sult-ing []\T1/pcr
/m/n/10 v []\T1/ptm/m/n/10 is [][][]\T1/pcr/m/n/10 numeric[][][][]\T1/ptm/m/n/1
0 , since
[2392]
[2393]
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[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2394]
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[2398]
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[]\T1/pcr/m/n/10 signature(from = "denseLU", logarithm = "logical")[]\T1/ptm/m/
n/10 : com-
[2399]
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
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 []              \T1/pcr/m/n/9 new(  "pMatrix", Dim = c(n, n), Dimnames = c(dn[
1L], list(NULL)),[] 
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 []              \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = list(
NULL, NULL),[] 
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 []              \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = c(lis
t(NULL), dn[2L]),[] 
[2400]
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[]\T1/pcr/m/n/10 signature(x = "dgCMatrix")[]\T1/ptm/m/n/10 : com-putes the LU 
de-com-po-si-tion of a square
[2401]
[2402]
[2403]
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[]\T1/ptm/m/n/10 Note that both []\T1/pcr/m/n/10 new(.) []\T1/ptm/m/n/10 and []
[][]\T1/pcr/m/n/10 spMatrix[][][] []\T1/ptm/m/n/10 con-struc-tors for []\T1/pcr
/m/n/10 "dgTMatrix" []\T1/ptm/m/n/10 (and other
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[]\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in
 more than one pos-si-ble
[2404]
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[]\T1/ptm/m/n/10 Construct a for-mally di-ag-o-nal [][][]\T1/pcr/m/n/10 Matrix[
][][][]\T1/ptm/m/n/10 , i.e., an ob-ject in-her-it-ing from vir-tual class
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 []\T1/pcr/m/n/10 .sparseDiagonal(n, x = NULL, uplo = "U", shape = "t", unitri 
= TRUE, kind, cols)[] 
[2405]
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[]\T1/pcr/m/n/10 .trDiagonal() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 .symDiagon
al() []\T1/ptm/m/n/10 are sim-ple wrap-pers, for
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[]\T1/pcr/m/n/10 .sparseDiagonal(shape = "t") []\T1/ptm/m/n/10 and []\T1/pcr/m/
n/10 .sparseDiagonal(shape = "s")[]\T1/ptm/m/n/10 , re-spec-
[2406]
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[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 dimnames[][][][]\T1/ptm/m/n/10 , a []
[][]\T1/pcr/m/n/10 list[][][][]\T1/ptm/m/n/10 , see the [][][]\T1/pcr/m/n/10 Ma
trix[][][] []\T1/ptm/m/n/10 class de-scrip-tion. Typ-i-cally
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[]\T1/pcr/m/n/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these gr
oup meth-ods re-turn a
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[]\T1/pcr/m/n/10 signature(e1 = "ddiMatrix", e2="denseMatrix")[]\T1/ptm/m/n/10 
: the re-sult is from class
[2407]
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[]\T1/pcr/m/n/10 (object = "diagonalMatrix")[]\T1/ptm/m/n/10 : Re-turns an ob-j
ect of S3 class
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[][][]\T1/pcr/m/n/10 Diagonal[][][]() []\T1/ptm/m/n/10 as con-struc-tor of thes
e ma-tri-ces, and [][][]\T1/pcr/m/n/10 isDiagonal[][][][]\T1/ptm/m/n/10 . [][][
]\T1/pcr/m/n/10 ddiMatrix[][][] []\T1/ptm/m/n/10 and
[2408]
[2409]
[2410]
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[]\T1/pcr/m/n/10 signature(x = "dMatrix", digits = "numeric")[]\T1/ptm/m/n/10 :
 this group con-tains
[2411]
[2412]
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 []\T1/pcr/m/n/9 stopifnot(all.equal(S9p0, S9p))# same as as default, but diffe
rent from the random one[] 
[2413]
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[]\T1/pcr/m/n/10 signature(x = "dpoMatrix")[]\T1/ptm/m/n/10 : Re-turns the [][]
[]\T1/pcr/m/n/10 determinant[][][] []\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 x[]\T1/
ptm/m/n/10 , via
[2414]
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[]\T1/ptm/m/n/10 Currently the va-lid-ity meth-ods for these classes such as
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[][][]\T1/pcr/m/n/10 getValidity[][][](getClass("dpoMatrix")) []\T1/ptm/m/n/10 
for ef-fi-ciency rea-sons only check the di-
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\T1/pcr/m/n/10 error=identity), "error") []\T1/ptm/m/n/10 . In-deed, when \T1/p
tm/m/it/10 co-erc-ing \T1/ptm/m/n/10 to these classes, a ver-sion
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\T1/ptm/m/n/10 of [][][]\T1/pcr/m/n/10 Cholesky[][][]() []\T1/ptm/m/n/10 or [][
][]\T1/pcr/m/n/10 chol[][][]() []\T1/ptm/m/n/10 is typ-i-cally used, e.g., see 
[]\T1/pcr/m/n/10 selectMethod("coerce",
Underfull \hbox (badness 6675) in paragraph at lines 4559--4566
[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 Matrix[][][][]\T1/ptm/m/n/10 , typ-i-ca
lly in-her-it-ing from vir-tual class [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]
\T1/ptm/m/n/10 .
Underfull \hbox (badness 6493) in paragraph at lines 4559--4566
[][][]\T1/pcr/m/n/10 denseMatrix[][][] []\T1/ptm/m/n/10 and tra-di-tional vec-t
ors and ma-tri-ces are co-erced to
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Underfull \hbox (badness 10000) in paragraph at lines 4574--4582
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing if the re-sult must in-herit from vi
r-tual class
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[][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 . If []\T1/pcr/m/n/10 
FALSE []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 in-her-its from 
[][][]\T1/pcr/m/n/10 RsparseMatrix[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4597--4600
[]\T1/ptm/m/n/10 Function [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/
10 , for con-struct-ing ob-jects in-her-it-ing from vir-tual class
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[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsCMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 2103) in paragraph at lines 4641--4645
[]\T1/pcr/m/n/10 new("dsTMatrix", ...)[]\T1/ptm/m/n/10 , or au-to-mat-i-cally v
ia e.g., []\T1/pcr/m/n/10 as(*, "symmetricMatrix")[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 signature(x = "dsCMatrix", pivot = "logical")[]\T1/ptm/m/n/10 
: Re-turns (and stores) the
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Underfull \hbox (badness 1221) in paragraph at lines 4834--4837
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "dMatrix"[]\T1/ptm/m/n/10 , by class []
\T1/pcr/m/n/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/pcr/m/n/10 "sparse
Matrix"[]\T1/ptm/m/n/10 , by classes
Underfull \hbox (badness 1400) in paragraph at lines 4844--4847
[]\T1/pcr/m/n/10 signature(x = "dsRMatrix", uplo = "character")[]\T1/ptm/m/n/10
 : if []\T1/pcr/m/n/10 uplo ==
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Underfull \hbox (badness 10000) in paragraph at lines 4896--4898
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsyMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 1365) in paragraph at lines 4932--4935
[]\T1/pcr/m/n/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/10
 , or []\T1/pcr/m/n/10 x = "dsyMatrix"
[2420]
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 []\T1/pcr/m/n/9 stopifnot(all(S1 == S2)) # equal "seen as matrix", but differ 
internally :[] 
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 []\T1/pcr/m/n/9 U5 <- new("dtCMatrix", i= c(1L, 0:3), p=c(0L,0L,0:2, 5L), Dim 
= c(5L, 5L),[] 
Underfull \hbox (badness 3635) in paragraph at lines 5139--5143
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ddenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Cla
ss
Underfull \hbox (badness 10000) in paragraph at lines 5148--5151
[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
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[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/n
/10 : the
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Underfull \hbox (badness 10000) in paragraph at lines 5399--5401
[]\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir
-tual class
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 []    \T1/pcr/m/n/10 all.equal(as(x, "matrix"), as(Reduce(\TS1/cmtt/m/n/10 `\T
1/pcr/m/n/10 %*%\TS1/cmtt/m/n/10 `\T1/pcr/m/n/10 , expand2(y)), "matrix")) 
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 [] [] 
[2427]
Underfull \hbox (badness 7064) in paragraph at lines 5477--5494
[]\T1/pcr/m/n/10 signature(x = "p?BunchKaufman")[]\T1/ptm/m/n/10 : ex-pands the
 fac-tor-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 =
Underfull \hbox (badness 3000) in paragraph at lines 5506--5513
[]\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : ex-pands the fac-to
r-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 = \OML/cmm/m/it/10 P[]LU$ \T1/pt
m/m/n/10 as
Underfull \hbox (badness 2735) in paragraph at lines 5522--5529
[]\T1/pcr/m/n/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/
10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L)[]\T1/p
tm/m/n/10 .
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[]\T1/pcr/m/n/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/1
0 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L, U,
Underfull \hbox (badness 2680) in paragraph at lines 5529--5544
\T1/pcr/m/n/10 Q)[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 expand(x)[["Q"]] []\T1/ptm
/m/n/10 and []\T1/pcr/m/n/10 expand2(x)[["P2."]] []\T1/ptm/m/n/10 rep-re-sent t
he same per-
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\T1/ptm/m/n/10 mu-ta-tion ma-trix $\OML/cmm/m/it/10 P[]$ \T1/ptm/m/n/10 but hav
e op-po-site []\T1/pcr/m/n/10 margin []\T1/ptm/m/n/10 slots and in-verted []\T1
/pcr/m/n/10 perm []\T1/ptm/m/n/10 slots.
Underfull \hbox (badness 2073) in paragraph at lines 5544--5549
[]\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/10
 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(L, U, P)[]\T1/
ptm/m/n/10 .
[2428]
[2429]
[2430]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5752--5752
 []\T1/pcr/m/n/9 str(pores <- readMM(system.file("external/pores_1.mtx", packag
e = "Matrix")))[] 
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 []\T1/pcr/m/n/9 str(utm   <- readHB(system.file("external/utm300.rua" , packag
e = "Matrix")))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5754--5754
 []\T1/pcr/m/n/9 str(lundA <- readMM(system.file("external/lund_a.mtx" , packag
e = "Matrix")))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5755--5755
 []\T1/pcr/m/n/9 str(lundA <- readHB(system.file("external/lund_a.rsa" , packag
e = "Matrix")))[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 5756--5756
 []\T1/pcr/m/n/9 ## https://math.nist.gov/MatrixMarket/data/Harwell-Boeing/coun
terx/counterx.htm[] 
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 []\T1/pcr/m/n/9 str(jgl   <- readMM(system.file("external/jgl009.mtx" , packag
e = "Matrix")))[] 
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 []\T1/pcr/m/n/9 u. <- url("https://www.cise.ufl.edu/research/sparse/RB/Boeing/
msc00726.tar.gz")[] 
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 []\T1/pcr/m/n/9 ## Store as MatrixMarket (".mtx") file, here inside temporary 
dir./folder:[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5771--5771
 []\T1/pcr/m/n/9 file.info(MMfile)[,c("size", "ctime")] # (some confirmation of
 the file\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s)[] 
[2431]
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 []\T1/pcr/m/n/9 ## has columns (i, j, x) -> we can use via do.call() as argume
nts to sparseMatrix():[] 
[2432]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5843--5843
 []    \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans =  TRUE, left =  TRUE),  
crossprod(L, y))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5844--5844
 []    \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans =  TRUE, left = FALSE), t
crossprod(y, L))[] 
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 []\T1/pcr/m/n/10 .diag2dense(from, kind = ".", shape = "t", packed = FALSE, up
lo = "U")[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 5925--5925
 []\T1/pcr/m/n/10 .m2dense(from, class = ".ge", uplo = "U", diag = "N", trans =
 FALSE)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 5928--5928
 []\T1/pcr/m/n/10 .diag2sparse(from, kind = ".", shape = "t", repr = "C", uplo 
= "U")[] 
[2433]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 5930--5930
 []\T1/pcr/m/n/10 .m2sparse(from, class = ".gC", uplo = "U", diag = "N", trans 
= FALSE)[] 
Underfull \hbox (badness 10000) in paragraph at lines 6000--6002
[]\T1/ptm/m/n/10 a string in []\T1/pcr/m/n/10 c("trace", "sumLog", "prod", "min
", "max",
[2434]
Underfull \hbox (badness 10000) in paragraph at lines 6073--6079
[][]\T1/pcr/m/n/10 .solve.dgC.*(a, b)[]\T1/ptm/b/n/10 :  []\T1/pcr/m/n/10 .solv
e.dgC.lu(a, b) []\T1/ptm/m/n/10 needs a square ma-trix []\T1/pcr/m/n/10 a[]\T1/
ptm/m/n/10 .
Underfull \hbox (badness 10000) in paragraph at lines 6073--6079
[]\T1/pcr/m/n/10 .solve.dgC.qr(a, b) []\T1/ptm/m/n/10 needs a ``long'' ma-trix 
[]\T1/pcr/m/n/10 a[]\T1/ptm/m/n/10 , with []\T1/pcr/m/n/10 nrow(a) >= ncol(a)[]
\T1/ptm/m/n/10 .
[2435]
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[][]\T1/pcr/m/n/10 .updateCHMfactor(object, parent, mult)[]\T1/ptm/b/n/10 :  []
\T1/pcr/m/n/10 .updateCHMfactor []\T1/ptm/m/n/10 up-
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\T1/ptm/m/n/10 dates []\T1/pcr/m/n/10 object []\T1/ptm/m/n/10 with the re-sult 
of Cholesky fac-tor-iz-ing []\T1/pcr/m/n/10 F(parent) + mult[1] *
Underfull \hbox (badness 2443) in paragraph at lines 6087--6096
\T1/pcr/m/n/10 diag(nrow(parent))[]\T1/ptm/m/n/10 , i.e., []\T1/pcr/m/n/10 F(pa
rent) []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 mult[1] []\T1/ptm/m/n/10 times the
 iden-tity ma-trix,
[2436]
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.image}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6399 \aliasA{image}{image-methods}{image}
                                           
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[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
][]\T1/pcr/m/n/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use
Overfull \hbox (47.58038pt too wide) in paragraph at lines 6514--6514
 []\T1/pcr/m/n/9 stopifnot(!is.null(leg <- imgC$legend), is.list(leg$right)) # 
failed for 2 days ..[] 
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 []\T1/pcr/m/n/9 ## Using (xlim,ylim) has advantage : matrix dimension and (col
/row) indices:[] 
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 [] \T1/pcr/m/n/9 I2 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE,    
    border.col=NA)[] 
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 [] \T1/pcr/m/n/9 I3 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd
=2, border.col=NA)[] 
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 []\T1/pcr/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor
der.col = adjustcolor("skyblue", 1/2))[] 
[2442]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6553--6553
 []\T1/pcr/m/n/9 image(USCounties, useRaster = TRUE) # should not suffer from a
nti-aliasing[] 
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 []   \T1/pcr/m/n/9 ## and now look at the *.png image in a viewer you can easi
ly zoom in and out[] 
[2443]
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[]\T1/pcr/m/n/10 signature(x = "indMatrix", y = "Matrix") []\T1/ptm/m/n/10 and 
oth-ers listed by
Underfull \hbox (badness 1286) in paragraph at lines 6684--6687
[]\T1/pcr/m/n/10 showMethods("%*%", classes = "indMatrix")[]\T1/ptm/m/n/10 : ma
-trix prod-ucts im-ple-mented
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[]\T1/pcr/m/n/10 signature(from = "numeric", to = "indMatrix")[]\T1/ptm/m/n/10 
: sup-port-ing typ-i-cal
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[]\T1/pcr/m/n/10 signature(from = "list", to = "indMatrix")[]\T1/ptm/m/n/10 : s
up-port-ing []\T1/pcr/m/n/10 indMatrix
[2444]
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[]\T1/pcr/m/n/10 signature(x = "indMatrix")[]\T1/ptm/m/n/10 : row and
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[]\T1/pcr/m/n/10 signature(X = "indMatrix", Y = "indMatrix")[]\T1/ptm/m/n/10 : 
Kro-necker prod-uct of
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[]\T1/ptm/m/n/10 Fabian Scheipl at `\T1/pcr/m/n/10 uni-muenchen.de\T1/ptm/m/n/1
0 ', build-ing on the ex-ist-ing class [][][]\T1/pcr/m/n/10 pMatrix[][][] []\T1
/ptm/m/n/10 af-ter
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\T1/ptm/m/n/10 a nice hike's con-ver-sa-tion with Mar-tin Maech-ler. Meth-ods f
or [][][]\T1/pcr/m/n/10 crossprod[][][](x, y) []\T1/ptm/m/n/10 and
[2445]
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[]\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be
 a per-mu-ta-tion of
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[]\T1/pcr/m/n/10 invertPerm(p) []\T1/ptm/m/n/10 re-turns an in-te-ger vec-tor o
f length []\T1/pcr/m/n/10 length(p) []\T1/ptm/m/n/10 such that
Underfull \hbox (badness 4441) in paragraph at lines 6837--6841
[]\T1/pcr/m/n/10 p[invertPerm(p)] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 invertP
erm(p)[p] []\T1/ptm/m/n/10 are both []\T1/pcr/m/n/10 seq_along(p)[]\T1/ptm/m/n/
10 , i.e., the
[2446]
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 []\T1/pcr/m/n/9 ## Product of transpositions (1 2)(2 1)(4 3)(6 8)(10 1) = (3 4
)(6 8)(1 10)[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6888 \aliasA{anyNA}{is.na-methods}{anyNA}
                                           
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.finite
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6895 ...asA{is.finite}{is.na-methods}{is.finite}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.infini
te}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6903 ...is.infinite}{is.na-methods}{is.infinite}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.na}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6911 \aliasA{is.na}{is.na-methods}{is.na}
                                           
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.nan}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6918 \aliasA{is.nan}{is.na-methods}{is.nan}
                                             
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.isSymmetr
ic}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7077 ...etric}{isSymmetric-methods}{isSymmetric}
                                                  
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 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub
le.eps, tol1 = 8 * tol, ...)[] 
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 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub
le.eps, ...)[] 
[2450]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 7181--7181
 []\T1/pcr/m/n/9 isSymmetric(as(M, "generalMatrix")) # still symmetric, even if
 not "formally"[] 
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 []\T1/pcr/m/n/9 showMethods("isSymmetric", includeDefs = TRUE) # includes S3 g
eneric from base[] 
[2451]
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 []\T1/pcr/m/n/9 isTriangular(as(M, "generalMatrix")) # still triangular, even 
if not "formally"[] 
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 []\T1/pcr/m/n/10 KhatriRao(X, Y = X, FUN = "*", sparseY = TRUE, make.dimnames 
= FALSE) 
[2452]
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 []\T1/pcr/m/n/9 stopifnot(all(K1 <- KhatriRao(nd, zm) == 0), identical(dim(K1)
, c(12L, 4L)),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7372--7372
 []          \T1/pcr/m/n/9 all(K2 <- KhatriRao(zm, nd) == 0), identical(dim(K2)
, c(12L, 4L)))[] 
[2453]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7379--7379
 []   \T1/pcr/m/n/9 identical(dimnames(KhatriRao(m, d0, make.dimnames=TRUE)), d
imnames(Kmd)))[] 
[2454]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kronecker
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7453 ...kronecker}{kronecker-methods}{kronecker}
                                                  
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[]\T1/pcr/m/n/10 ldenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
[2455]
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[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2456
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,ndiMatr
ix,Matrix.Rdash.method}) has been already used, duplicate ignored
<argument> ...shipout:D \box_use:N \l_shipout_box 
                                                  \__shipout_drop_firstpage_...
l.7689 C
        lass \code{"\LinkA{sparseMatrix}{sparseMatrix.Rdash.class}"}, by cla...
]
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[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ldenseMatrix"[]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 7744--7747
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2457]
Underfull \hbox (badness 10000) in paragraph at lines 7801--7811
[]\T1/pcr/m/n/10 lsTMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltTMatrix[]\T
1/ptm/m/n/10 ) or in com-pressed column-oriented form (class
Underfull \hbox (badness 1242) in paragraph at lines 7801--7811
[][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pc
r/m/n/10 lgCMatrix[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lsCMatrix[]\T1/ptm/m/n/10
 , and []\T1/pcr/m/n/10 ltCMatrix[]\T1/ptm/m/n/10 ) or--\T1/ptm/m/it/10 rarely\
T1/ptm/m/n/10 --in
[2458]
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[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2459]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2460]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2461]
[2462]
[2463]
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[]\T1/ptm/m/n/10 vector of all non-zero en-tries of []\T1/pcr/m/n/10 x[]\T1/ptm
/m/n/10 ; ex-ists \T1/ptm/b/n/10 only \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 as(x
,
Underfull \hbox (badness 1490) in paragraph at lines 8289--8291
[]\T1/pcr/m/n/10 mat2triplet() []\T1/ptm/m/n/10 is con-cep-tu-ally the \T1/ptm/
m/it/10 in-verse \T1/ptm/m/n/10 func-tion of [][][]\T1/pcr/m/n/10 spMatrix[][][
] []\T1/ptm/m/n/10 and (one case of)
[2464]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rpcent.*
.Rpcent.}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8310 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8384 ...A{crossprod}{matmult-methods}{crossprod}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrosspro
d}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8460 ...tcrossprod}{matmult-methods}{tcrossprod}
                                                  
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\T1/ptm/m/n/10 ally im-ple-mented ef-fi-ciently with-out com-put-ing [][][]\T1/
pcr/m/n/10 t[][][](.)[]\T1/ptm/m/n/10 's un-nec-es-sar-ily. They also re-turn
[2465]
Underfull \hbox (badness 10000) in paragraph at lines 8615--8618
[]\T1/pcr/m/n/10 signature(x = "dgeMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
Underfull \hbox (badness 10000) in paragraph at lines 8618--8623
[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-tures (use
Underfull \hbox (badness 3557) in paragraph at lines 8618--8623
[]\T1/pcr/m/n/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-tr
ix mul-ti-pli-ca-tion. Mul-ti-
Underfull \hbox (badness 6608) in paragraph at lines 8623--8627
\T1/ptm/m/n/10 sig-na-tures, use []\T1/pcr/m/n/10 showMethods("crossprod", clas
s = "dgeMatrix")[]\T1/ptm/m/n/10 , ma-trix
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[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-
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[2468]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8856 \aliasA{det}{Matrix-class}{det}
                                      
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[]\T1/pcr/m/n/10 signature(x = "Matrix", value = "list")[]\T1/ptm/m/n/10 : set 
the []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 to a
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[2469]
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[]\T1/pcr/m/n/10 signature(from = "ANY", to = "Matrix")[]\T1/ptm/m/n/10 : This 
re-lies on a cor-rect
[2470]
[2471]
Underfull \hbox (badness 10000) in paragraph at lines 9125--9129
[]\T1/pcr/m/n/10 CholeskyFactorization[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Bunch
KaufmanFactorization[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 signature(x = "MatrixFactorization", logarithm =
Underfull \hbox (badness 10000) in paragraph at lines 9165--9168
[]\T1/pcr/m/n/10 signature(obj = "MatrixFactorization")[]\T1/ptm/m/n/10 : re-tu
rns []\T1/pcr/m/n/10 obj []\T1/ptm/m/n/10 with
Underfull \hbox (badness 3019) in paragraph at lines 9174--9177
[]\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 CholeskyFactorization[]\T
1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 Cholesky[][][][]\T1/ptm/m/n/10 , [][
][]\T1/pcr/m/n/10 pCholesky[][][][]\T1/ptm/m/n/10 , and
[2472]
Underfull \hbox (badness 10000) in paragraph at lines 9178--9180
[]\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 BunchKaufmanFactorization
[]\T1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 BunchKaufman[][][] []\T1/ptm/m/n
/10 and
Underfull \hbox (badness 10000) in paragraph at lines 9193--9196
[]\T1/ptm/m/n/10 Generic func-tions [][][]\T1/pcr/m/n/10 expand1[][][] []\T1/pt
m/m/n/10 and [][][]\T1/pcr/m/n/10 expand2[][][] []\T1/ptm/m/n/10 for con-struct
-ing ma-trix fac-tors from
Underfull \hbox (badness 1062) in paragraph at lines 9222--9225
[]\T1/pcr/m/n/10 ndenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
Underfull \hbox (badness 6063) in paragraph at lines 9254--9257
[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2473]
Underfull \hbox (badness 3312) in paragraph at lines 9311--9313
[]\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/pcr/m/n/10 X <- (X + t(X))/2 []
\T1/ptm/m/n/10 should be done, af-ter []\T1/pcr/m/n/10 X <-
[2474]
[2475]
Overfull \hbox (85.38034pt too wide) in paragraph at lines 9414--9414
 []   \T1/pcr/m/n/9 all.equal(n.A.m, unname(as.matrix(n.A$mat)), tolerance = 1e
-15)# seen rel.d.= 1.46e-16[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 9454--9454
 []\T1/pcr/m/n/9 stopifnot(all.equal(ncr, ncF))# norm type does not matter at a
ll in this example[] 
[2476]
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[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ndenseMatrix"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 4229) in paragraph at lines 9507--9512
\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 9515--9518
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2477]
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[]\T1/pcr/m/n/10 signature(from = "matrix", to = "nMatrix")[]\T1/ptm/m/n/10 : N
ote that these co-er-cions
[2478]
Underfull \hbox (badness 1867) in paragraph at lines 9696--9698
[]\T1/ptm/m/n/10 fast sim-
[2479]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9738 \aliasA{norm}{norm-methods}{norm}
                                        
[2480]
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 []\T1/pcr/m/n/9 A <- sparseMatrix(i, j, x = x)                      ##  8 x 10
 "dgCMatrix"[] 
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 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9835--9835
 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
Underfull \hbox (badness 2401) in paragraph at lines 9880--9890
[]\T1/ptm/m/n/10 These can be stored in the ``triplet'' form ([][][]\T1/pcr/m/n
/10 TsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pcr/m/n/10 ngTMatri
x[]\T1/ptm/m/n/10 ,
[2481]
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[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2482]
Underfull \hbox (badness 10000) in paragraph at lines 10031--10034
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2483]
Underfull \hbox (badness 10000) in paragraph at lines 10095--10098
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2484]
Underfull \hbox (badness 10000) in paragraph at lines 10169--10171
[]\T1/ptm/m/n/10 typically a []\T1/pcr/m/n/10 "packedMatrix"[]\T1/ptm/m/n/10 , 
though
[2485]
[2486]
[2487]
Underfull \hbox (badness 10000) in paragraph at lines 10383--10386
[]\T1/pcr/m/n/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and ot
h-ers listed by
Underfull \hbox (badness 8189) in paragraph at lines 10383--10386
[]\T1/pcr/m/n/10 showMethods("%*%", classes = "pMatrix")[]\T1/ptm/m/n/10 : ma-t
rix prod-ucts im-ple-mented
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[]\T1/pcr/m/n/10 signature(from = "numeric", to = "pMatrix")[]\T1/ptm/m/n/10 : 
sup-port-ing typ-i-cal
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[]\T1/pcr/m/n/10 signature(a = "pMatrix", b = "missing")[]\T1/ptm/m/n/10 : the 
in-verse per-mu-ta-tion ma-trix,
[2488]
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 []               \T1/pcr/m/n/10 col.names, note.dropping.colnames = TRUE, uniD
iag = TRUE,[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 10467--10467
 []\T1/pcr/m/n/10 printSpMatrix(x, digits = NULL, maxp = max(100L, getOption("m
ax.print")),[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 10469--10469
 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 10473--10473
 []\T1/pcr/m/n/10 printSpMatrix2(x, digits = NULL, maxp = max(100L, getOption("
max.print")),[] 
[2489]
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 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
Underfull \hbox (badness 3989) in paragraph at lines 10499--10509
[]\T1/ptm/m/n/10 logical or string spec-i-fy-ing if and how col-umn names of []
\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 should
Underfull \hbox (badness 10000) in paragraph at lines 10499--10509
\T1/ptm/m/n/10 be printed, pos-si-bly ab-bre-vi-ated. The de-fault is taken fro
m
[2490]
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been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10601 \aliasA{qr}{qr-methods}{qr}
                                   
[2491]
[2492]
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 []    \T1/pcr/m/n/9 all.equal(qr.coef(qr.A1, b), drop(solve(crossprod(A1), cro
ssprod(A1, b))))[] 
[2493]
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 []    \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 qr.coef\TS1/pcr/m/n/9 ' \
T1/pcr/m/n/9 computes unique least squares solution of "nearby" problem[] 
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 []    \T1/pcr/m/n/9 ## Z x = b for some full rank Z ~ A, currently without war
ning {FIXME} ![] 
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2494]
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[]\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/pcr/m/n/10 
qr[][][](x, tol,
Underfull \hbox (badness 10000) in paragraph at lines 10862--10865
[]\T1/ptm/m/n/10 is for back com-pat-i-bil-ity; for dense []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 , it cor-re-sponds to
[2495]
[2496]
Overfull \hbox (85.38034pt too wide) in paragraph at lines 10959--10959
 []\T1/pcr/m/n/9 ## The meaning of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 tol\TS1/pcr/m/
n/9 ' \T1/pcr/m/n/9 for method="qrLINPACK" and *dense* x is not entirely "scale
 free"[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 10975--10975
 []\T1/pcr/m/n/9 sapply(meths, function(.m.) rankMatrix(M15, method = .m., tol 
= 1e-7)) # all 14[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 10982--10982
 []\T1/pcr/m/n/9 (st1 <- system.time(r1 <- rankMatrix(L)))                # war
ning+ ~1.5 sec (2013)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 10983--10983
 []\T1/pcr/m/n/9 (st2 <- system.time(r2 <- rankMatrix(L, method = "qr"))) # con
siderably faster![] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11002 \aliasA{rcond}{rcond-methods}{rcond}
                                            
[2497]
[2498]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 11118--11118
 []\T1/pcr/m/n/9 rcond(x2 <- cbind(x1, 2:11))# practically 0, since x2 does not
 have full rank[] 
[2499]
[2500]
Underfull \hbox (badness 2150) in paragraph at lines 11284--11292
\T1/ptm/m/n/10 dices, if not []\T1/pcr/m/n/10 symmetric [][]sample.int[][][](nr
ow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/pcr/m/n/10 rand.x []\T1/ptm/m/n
/10 is not
[2501]
[2502]
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[]\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 SchurFactorization[][][][]\T1/ptm/m
/n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1/pt
m/m/n/10 , by class
[2503]
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[]\T1/pcr/m/n/10 signature(from = "Schur", logarithm = "logical")[]\T1/ptm/m/n/
10 : com-putes
[2504]
[2505]
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 []    \T1/pcr/m/n/9 all.equal(e1, e3[order(Mod(e3), decreasing = TRUE)], toler
ance = 1e-13)[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11630 \aliasA{solve}{solve-methods}{solve}
                                            
[2506]
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 []\T1/pcr/m/n/10 solve(a, b, system = c("A", "LDLt", "LD", "DLt", "L", "Lt", "
D", "P", "Pt"), ...)[] 
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[]\T1/ptm/m/n/10 a vec-tor, [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/
n/10 , ma-trix, or [][][]\T1/pcr/m/n/10 Matrix[][][] []\T1/ptm/m/n/10 sat-is-fy
-ing []\T1/pcr/m/n/10 NROW(b) ==
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[]\T1/ptm/m/n/10 Methods for dense []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are buil
t on 14 LA-PACK rou-tines: class []\T1/pcr/m/n/10 d..Matrix[]\T1/ptm/m/n/10 , w
here
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[]\T1/ptm/m/n/10 Methods for sparse []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are bui
lt on CXS-parse rou-tines []\T1/pcr/m/n/10 cs_lsolve[]\T1/ptm/m/n/10 , []\T1/pc
r/m/n/10 cs_usolve[]\T1/ptm/m/n/10 , and
[2507]
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 []\T1/pcr/m/n/9 image(ia0 <- solve(a, tol = 0)) # checker board, dense [but re
ally, a is singular!][] 
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 []  \T1/pcr/m/n/9 ## Fails on 32-bit [Fedora 19, R 3.0.2] from Matrix 1.1-0 on
 [FIXME ??] only[] 
[2508]
Underfull \hbox (badness 10000) in paragraph at lines 11916--11919
[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu
la and data frame
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 []    \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveC
sparse)[] 
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 []    \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveC
sparse,[] 
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[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
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[]\T1/ptm/m/n/10 character string or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or 
(co-er-ca-ble to)
Underfull \hbox (badness 2591) in paragraph at lines 11952--11955
[]\T1/pcr/m/n/10 "[][]sparseMatrix[][][]"[]\T1/ptm/m/n/10 , spec-i-fy-ing the c
on-trasts to be ap-plied to the
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[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
Underfull \hbox (badness 2828) in paragraph at lines 11963--11967
[]\T1/pcr/m/n/10 sparse.model.matrix []\T1/ptm/m/n/10 has been changed to []\T1
/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , 2010-07, for
[2509]
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
Underfull \hbox (badness 3291) in paragraph at lines 12005--12010
[]\T1/pcr/m/n/10 model.Matrix(sparse = TRUE) []\T1/ptm/m/n/10 from pack-age [][
]\T1/ptm/b/n/10 Ma-trix-Mod-els[][] \T1/ptm/m/n/10 may be nowa-days be
Underfull \hbox (badness 2073) in paragraph at lines 12005--12010
\T1/ptm/m/n/10 prefer-able to []\T1/pcr/m/n/10 sparse.model.matrix[]\T1/ptm/m/n
/10 , as []\T1/pcr/m/n/10 model.Matrix []\T1/ptm/m/n/10 re-turns an ob-ject of 
class
[2510]
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0, 0),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12059--12059
 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop=FALSE),"CsparseMatrix"), dim(M)
 == c(3, 0),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12060--12060
 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f12, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0,12),[] 
[2511]
Underfull \hbox (badness 2961) in paragraph at lines 12122--12125
[]\T1/pcr/m/n/10 signature(from = "sparseLU", logarithm = "logical")[]\T1/ptm/m
/n/10 : com-
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 []\T1/pcr/m/n/9 A <- as(readMM(system.file("external", "pores_1.mtx", package 
= "Matrix")),[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12176--12176
 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
[2512]
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(dn[1L
], list(NULL)),[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 12186--12186
 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
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[]\T1/ptm/m/n/10 This in-ter-face is rec-om-mended over di-rect con-struc-tion 
via calls such as
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12218--12218
 []             \T1/pcr/m/n/10 symmetric = FALSE, triangular = FALSE, index1 = 
TRUE,[] 
[2513]
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\T1/ptm/m/n/10 of the sparse ma-trix re-sult, i.e., spec-i-fy-ing one of the vi
r-tual classes
[2514]
Underfull \hbox (badness 10000) in paragraph at lines 12345--12348
[]\T1/ptm/m/n/10 The stan-dard \T1/phv/m/n/10 R [][][]\T1/pcr/m/n/10 xtabs[][][
](*, sparse=TRUE)[]\T1/ptm/m/n/10 , for sparse ta-bles and
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12358--12358
 []\T1/pcr/m/n/9 (A <- sparseMatrix(i, j, x = x))                    ##  8 x 10
 "dgCMatrix"[] 
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 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
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 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
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 []\T1/pcr/m/n/9 (AA <- sparseMatrix(c(1,3:8), c(2,9,6:10), x = 7 * (1:7), dims
 = c(10,20)))[] 
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 []\T1/pcr/m/n/9 ## i, j and x can be in an arbitrary order, as long as they ar
e consistent[] 
[2515]
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 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted
 if necessary:[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 12395--12395
 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 
1:6, dimnames = dn)[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12421--12421
 []\T1/pcr/m/n/9 ## pointers example in converting from other sparse matrix rep
resentations.[] 
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 []   \T1/pcr/m/n/9 nzchar(dfil <- system.file("extdata", "rua_32_ax.rua", pack
age = "SparseM"))) {[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12426--12426
 []  \T1/pcr/m/n/9 XX <- sparseMatrix(j = X@ja, p = X@ia - 1L, x = X@ra, dims =
 X@dimension)[] 
[2516]
Underfull \hbox (badness 6842) in paragraph at lines 12516--12519
[]\T1/pcr/m/n/10 (x = "sparseMatrix", logarithm=TRUE)[]\T1/ptm/m/n/10 : [][][]\
T1/pcr/m/n/10 determinant[][][]() []\T1/ptm/m/n/10 meth-ods
Underfull \hbox (badness 10000) in paragraph at lines 12551--12555
[][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/10 , and its ref-er-ences,
 such as [][][]\T1/pcr/m/n/10 xtabs[][][](*, sparse=TRUE)[]\T1/ptm/m/n/10 , or
[2517]
[2518]
Underfull \hbox (badness 2961) in paragraph at lines 12735--12738
[]\T1/pcr/m/n/10 signature(from = "sparseQR", logarithm = "logical")[]\T1/ptm/m
/n/10 : com-
[2519]
Underfull \hbox (badness 3229) in paragraph at lines 12813--12817
[]\T1/ptm/m/n/10 The many aux-il-iary func-tions for QR fac-tor-iza-tions: [][]
[]\T1/pcr/m/n/10 qr.Q[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.R[][][][]
\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.X[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 qr.coef[][][][]\T1/ptm/m/n/10 ,
[2520]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12853--12853
 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 12861--12861
 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(m, m), Dimnames = c(dn[1L
], list(NULL)),[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 12864--12864
 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2521]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 12883--12883
 []    \T1/pcr/m/n/9 ae2(qrc <- qr.coef  (qr.A, b), with(e.qr.A, solve(R1 %*% P
2., t(qrQ)) %*% b))[] 
Underfull \hbox (badness 5036) in paragraph at lines 12918--12920
[]\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case
 a
[2522]
Underfull \hbox (badness 2970) in paragraph at lines 13039--13045
[]\T1/ptm/m/n/10 Sparse Vec-tor Classes: The vir-tual mother class []\T1/pcr/m/
n/10 "sparseVector" []\T1/ptm/m/n/10 has the five ac-
Underfull \hbox (badness 3679) in paragraph at lines 13039--13045
\T1/ptm/m/n/10 tual daugh-ter classes []\T1/pcr/m/n/10 "dsparseVector"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "isparseVector"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "
lsparseVector"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 13084--13087
[]\T1/pcr/m/n/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m/
n/10 co-erces sparse
[2523]
Underfull \hbox (badness 10000) in paragraph at lines 13118--13123
[]\T1/pcr/m/n/10 (x = "nsparseVector")[]\T1/ptm/m/n/10 : re-turn [][][]\T1/pcr/
m/n/10 logical[][][] []\T1/ptm/m/n/10 or
Underfull \hbox (badness 10000) in paragraph at lines 13136--13138
[][][]\T1/pcr/m/n/10 sparseVector[][][]() []\T1/ptm/m/n/10 for friendly con-str
uc-tion of sparse vec-tors (apart from []\T1/pcr/m/n/10 as(*,
[2524]
Underfull \vbox (badness 10000) has occurred while \output is active
[2525]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 13232--13232
 []\T1/pcr/m/n/10 spMatrix(nrow, ncol, i = integer(0L), j = integer(0L), x = do
uble(0L)) 
Underfull \hbox (badness 2310) in paragraph at lines 13259--13265
[][][]\T1/pcr/m/n/10 Matrix[][][](*, sparse=TRUE) []\T1/ptm/m/n/10 for the more
 usual con-struc-tor of such ma-tri-ces. Then,
[2526]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[<.Rdash.
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.13311 ...\Rdash{}}{subassign-methods}{[<.Rdash.}
                                                  
Underfull \hbox (badness 6910) in paragraph at lines 13398--13400
[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2527]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has b
een already used, duplicate ignored
<to be read again> 
                   \relax 
l.13445 \aliasA{[}{subscript-methods}{[}
                                        
[2528]
Underfull \hbox (badness 2591) in paragraph at lines 13580--13585
\T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 triangularMatrix[][][][]\T1/ptm/m/n
/10 , and, e.g., [][][]\T1/pcr/m/n/10 dsyMatrix[][][] []\T1/ptm/m/n/10 for nu-m
eric \T1/ptm/m/it/10 dense \T1/ptm/m/n/10 ma-tri-ces, or
[2529]
Underfull \hbox (badness 2057) in paragraph at lines 13656--13658
[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
Underfull \hbox (badness 6396) in paragraph at lines 13665--13669
[]\T1/pcr/m/n/10 symmpart(x) []\T1/ptm/m/n/10 re-turns a sym-met-ric ma-trix, i
n-her-it-ing from [][][]\T1/pcr/m/n/10 symmetricMatrix[][][] []\T1/ptm/m/n/10 o
r
[2530]
Underfull \hbox (badness 7722) in paragraph at lines 13670--13675
[]\T1/pcr/m/n/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-trix
, in-her-it-ing from [][][]\T1/pcr/m/n/10 generalMatrix[][][][]\T1/ptm/m/n/10 ,
[2531]
Underfull \hbox (badness 6641) in paragraph at lines 13747--13750
[]\T1/ptm/m/n/10 Currently, [][][]\T1/pcr/m/n/10 Schur[][][][]\T1/ptm/m/n/10 , 
[][][]\T1/pcr/m/n/10 isSymmetric[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 as
() []\T1/ptm/m/n/10 (i.e. [][][]\T1/pcr/m/n/10 coerce[][][][]\T1/ptm/m/n/10 ) h
ave meth-ods with
Underfull \hbox (badness 5133) in paragraph at lines 13783--13787
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 "TsparseMatrix" []\T1/ptm/m/n/10 class is
 the vir-tual class of all sparse ma-tri-ces coded in
Underfull \hbox (badness 2818) in paragraph at lines 13783--13787
\T1/ptm/m/n/10 triplet form. Since it is a vir-tual class, no ob-jects may be c
re-ated from it. See
[2532]
[2533]
Underfull \hbox (badness 1668) in paragraph at lines 13910--13913
[][][]\T1/pcr/m/n/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 unpac
k[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/pcr/m/n/10 "[][]pac
kedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes
[2534]
Underfull \hbox (badness 10000) in paragraph at lines 14021--14027
[]\T1/ptm/m/n/10 GAL lat-tice file `\T1/pcr/m/n/10 usc_q.GAL\T1/ptm/m/n/10 ' (r
e-trieved in 2008 from
[2535]
[2536]
[2537]) (./boot-pkg.tex
[2538]
Chapter 18.
[2539]
[2540]
[2541]
[2542]
[2543]
[2544]
[2545]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 532--532
 []\T1/pcr/m/n/10 boot(data, statistic, R, sim = "ordinary", stype = c("i", "f"
, "w"), 
[2546]
Underfull \hbox (badness 1325) in paragraph at lines 570--577
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sim-u-la-tion r
e-quired. Pos-si-ble
Underfull \hbox (badness 1275) in paragraph at lines 585--590
[]\T1/ptm/m/n/10 An in-te-ger vec-tor or fac-tor spec-i-fy-ing the strata for m
ulti-sample prob-
[2547]
[2548]
[2549]
Underfull \hbox (badness 1881) in paragraph at lines 826--828
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 6493) in paragraph at lines 853--857
[][][]\T1/pcr/m/n/10 boot.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bo
ot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 censboot[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 empinf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 j
ack.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 tilt.boot[][][][]\T
1/ptm/m/n/10 ,
[2550]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 887--887
 []\T1/pcr/m/n/9 nuke.lm <- glm(log(cost) ~ date+log(cap)+ne+ct+log(cum.n)+pt, 
data = nuke)[] 
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[2551]
[2552]
[2553]
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[]\T1/ptm/m/n/10 If sup-plied, a value to be used as an es-ti-mate of the vari-
ance of the
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\T1/ptm/m/n/10 statis-tic for the nor-mal ap-prox-i-ma-tion and stu-den-tized i
n-ter-vals. If it
Underfull \hbox (badness 2343) in paragraph at lines 1084--1093
\T1/ptm/m/n/10 is not sup-plied and []\T1/pcr/m/n/10 length(index) []\T1/ptm/m/
n/10 is 2 then []\T1/pcr/m/n/10 var.t0 []\T1/ptm/m/n/10 de-faults to
Underfull \hbox (badness 2150) in paragraph at lines 1105--1111
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2554]
[2555]
[2556]
[2557]
Underfull \hbox (badness 1571) in paragraph at lines 1445--1447
[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2558]
[2559]
[2560]
[2561]
[2562]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1738--1738
 []\T1/pcr/m/n/10 censboot(data, statistic, R, F.surv, G.surv, strata = matrix(
1,n,2), 
[2563]
[2564]
[2565]
Underfull \vbox (badness 10000) has occurred while \output is active
[2566]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 2013--2013
 []\T1/pcr/m/n/9 mel.cox <- coxph(Surv(time, status == 1) ~ ns(thickness, df=4)
 + strata(ulcer),[] 
[2567]
Underfull \hbox (badness 6268) in paragraph at lines 2084--2086
[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2568]
[2569]
[2570]
Underfull \hbox (badness 1565) in paragraph at lines 2338--2343
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2571]
Underfull \hbox (badness 4595) in paragraph at lines 2363--2368
\T1/ptm/m/n/10 are passed un-changed ev-ery time []\T1/pcr/m/n/10 boot.out$stat
istic []\T1/ptm/m/n/10 is called.
Underfull \hbox (badness 1881) in paragraph at lines 2432--2434
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 2057) in paragraph at lines 2440--2441
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 empinf[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 k3.linear[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 linear.approx[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
saddle.distn[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.spline[][][][]
\T1/ptm/m/n/10 ,
[2572]
[2573]
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[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/pcr/m
/n/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 n []\T1/ptm/m/n/1
0 is the sam-ple
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\T1/ptm/m/n/10 size, if []\T1/pcr/m/n/10 unbiased []\T1/ptm/m/n/10 is []\T1/pcr
/m/n/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/pcr/m/n/10 1/n []\T
1/ptm/m/n/10 is used. This is mul-ti-plied by
[2574]
[2575]
[2576]
[2577]
[2578]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2895--2895
 []\T1/pcr/m/n/10 EEF.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t 
= 25, 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 2897--2897
 []\T1/pcr/m/n/10 EL.profile(y, tmin  =  min(y) + 0.1, tmax = max(y) - 0.1, n.t
  =  25,[] 
[2579]
[2580]
[2581]
Underfull \hbox (badness 3861) in paragraph at lines 3105--3108
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.arr
ay[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.ci[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 control[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 jack
.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 linear.approx[][][][]\
T1/ptm/m/n/10 ,
[2582]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 3158--3158
 []\T1/pcr/m/n/10 envelope(boot.out = NULL, mat = NULL, level = 0.95, index = 1
:ncol(mat)) 
[2583]
[2584]
[2585]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3378--3378
 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
[2586]
[2587]
[2588]
[2589]
[2590]
[2591]
[2592]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3838--3838
 []             \T1/pcr/m/n/10 t = boot.out$t[, index], w = NULL, def = TRUE, q
 = NULL)[] 
[2593]
[2594]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3977--3977
 []\T1/pcr/m/n/9 grav.p <- imp.prob(grav.tilt.boot, w = grav.w, index = 3, t0 =
 grav.z0[3])[] 
[2595]
[2596]
[2597]
[2598]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4259--4259
 []\T1/pcr/m/n/9 #  To draw the jackknife-after-bootstrap plot for the head siz
e data as in 
[2599]
[2600]
Underfull \hbox (badness 10000) in paragraph at lines 4362--4364
[]\T1/ptm/m/n/10 The in-dex of the vari-able of in-ter-est within the out-put o
f
Underfull \hbox (badness 1430) in paragraph at lines 4371--4375
\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is sup-plied but nei-the
r []\T1/pcr/m/n/10 t []\T1/ptm/m/n/10 nor []\T1/pcr/m/n/10 L []\T1/ptm/m/n/10 a
re sup-plied then []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is set to
[2601]
[2602]
[2603]
[2604]
[2605]
[2606]
[2607]
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[2609]
Underfull \hbox (badness 3000) in paragraph at lines 4959--4962
[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2610]
[2611]
[2612]
[2613]
Underfull \hbox (badness 2293) in paragraph at lines 5238--5241
[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
Underfull \hbox (badness 1668) in paragraph at lines 5238--5241
\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2614]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5317--5317
 []\T1/pcr/m/n/9 grav.boot <- boot(grav1, grav.fun, R = 499, stype = "w", strat
a = grav1[, 2])[] 
[2615]
[2616]
[2617]
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[2619]
[2620]
[2621]
[2622]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5866--5866
 []\T1/pcr/m/n/9 city.sp1$spa[1] <- jacobian(city, 1.25, city.sp1$zeta.hat) * c
ity.sp1$spa[1][] 
[2623]
Underfull \hbox (badness 1127) in paragraph at lines 5988--6006
[]\T1/ptm/m/n/10 etc. un-til a point is found with a cdf ap-prox-i-ma-tion less
 than []\T1/pcr/m/n/10 min(alpha)/10[]\T1/ptm/m/n/10 , then
[2624]
Underfull \hbox (badness 2837) in paragraph at lines 6021--6024
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/pcr/m/n/10 "s
addle.distn"[]\T1/ptm/m/n/10 . See the help file for
[2625]
[2626]
[2627]
[2628]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6306--6306
 []\T1/pcr/m/n/9 # This example is taken from Exercise 7.5 of Gill, Murray and 
Wright (1991). 
[2629]
[2630]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6495--6495
 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6497--6497
 []\T1/pcr/m/n/9 # value of the test statistic 1.84.  In the book exponential t
ilting was used[] 
[2631]
[2632]
[2633]
Underfull \hbox (badness 1596) in paragraph at lines 6742--6746
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2634]
[2635]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6902--6902
 []                        \T1/pcr/m/n/9 stype = "i", sim = "balanced", alpha =
 c(0.05, 0.95),[] 
[2636]
[2637]
[2638]
[2639]
[2640]
[2641]
[2642]
[2643]) (./class-pkg.tex
[2644]
Chapter 19.
[2645]
[2646]
[2647]
[2648]
[2649]
[2650]
[2651]
[2652]
[2653]
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[2655]
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[2658]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 1006--1006
 []    \T1/pcr/m/n/9 alpha = list(seq(0.05, 0, length.out = 1e4), seq(0.02, 0, 
length.out = 1e5)),[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1007--1007
 []    \T1/pcr/m/n/9 radii = list(seq(8, 1, length.out = 1e4), seq(4, 1, length
.out = 1e5)))[] 
[2659]
[2660]) (./cluster-pkg.tex
Chapter 20.
[2661]
[2662]
[2663]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 253--253
 []  \T1/pcr/m/n/9 all.equal(a.wgt [iC], agnes(d.vr, method="flexible", par.met
hod = 0.5)[iC])   ,[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 254--254
 []  \T1/pcr/m/n/9 all.equal(a.sing[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, -.5))[iC]),[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 255--255
 []  \T1/pcr/m/n/9 all.equal(a.comp[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, +.5))[iC]))[] 
[2664]
[2665]
[2666] [2667]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 519--519
 []           \T1/pcr/m/n/10 col = c(2, 0), border = 0, axes = TRUE, frame.plot
 = axes,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 523--523
 []           \T1/pcr/m/n/10 yaxRight = fromLeft, y.mar = 2.4 + max.strlen/2.5,
 ...)[] 
[2668]
[2669]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 638--638
 []      \T1/pcr/m/n/10 keep.data = medoids.x, rngR = FALSE, pamLike = FALSE, c
orrect.d = TRUE)[] 
[2670]
[2671]
[2672]
Underfull \hbox (badness 2941) in paragraph at lines 792--795
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 clara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\
T1/ptm/m/n/10 ,
[2673]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 835--835
 []\T1/pcr/m/n/9 ## those that are not always in same cluster (5 out of 3000 fo
r this seed):[] 
Underfull \hbox (badness 10000) in paragraph at lines 882--884
[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2674]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 947--947
 []     \T1/pcr/m/n/10 arrowArgs = list(col="red3", length=1/16, angle=90, code
=3), ...)[] 
[2675]
Underfull \hbox (badness 4872) in paragraph at lines 992--994
[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
Underfull \hbox (badness 1342) in paragraph at lines 1006--1010
[]\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in
 2012,
[2676]
Underfull \hbox (badness 2503) in paragraph at lines 1092--1096
[]\T1/ptm/m/n/10 Per Broberg (2006). SAGx: Sta-tis-ti-cal Anal-y-sis of the Gen
eChip. R pack-age ver-
[2677]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1118--1118
 []        \T1/pcr/m/n/9 sapply(mets, function(M) maxSE(fk, sk, method = M, SE.
factor = SEf)))[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 1135--1135
 []\T1/pcr/m/n/9 ## You can manually set it before running this :    doExtras <
- TRUE  # or  FALSE[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2678]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1173--1173
 []\T1/pcr/m/n/9 plot(gsP.Z, main = "clusGap(<iid_rnorm_p=3>)  ==> k = 1  clust
er is optimal")[] 
Underfull \hbox (badness 4144) in paragraph at lines 1205--1209
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 nor a []\T1/pcr/m/n/10 data []\T1/ptm/m/n/10 
com-po-nent, e.g., for
[2679]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 1281--1281
 []          \T1/pcr/m/n/10 col.clus = if(color) c(2, 4, 6, 3) else 5, cex = 1,
 cex.txt = cex,[] 
Overfull \hbox (72.78088pt too wide) in paragraph at lines 1287--1287
 []             \T1/pcr/m/n/10 round(100 * var.dec, digits = 2), "% of the poin
t variability."),[] 
[2680]
[2681]
[2682]
Underfull \hbox (badness 10000) in paragraph at lines 1474--1477
Underfull \hbox (badness 10000) in paragraph at lines 1488--1492
[][][]\T1/pcr/m/n/10 princomp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cmds
cale[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 daisy[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cov.mve[][][
][]\T1/ptm/m/n/10 ,
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1512--1512
 []\T1/pcr/m/n/9 clusplot(pamv, col.p = votes.clus, labels = 4)# color points a
nd label ellipses[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1522--1522
 []  \T1/pcr/m/n/9 clusplot(votes.diss, votes.clus, diss = TRUE, labels = 5)# i
dent. only points[] 
[2683]
Underfull \hbox (badness 5741) in paragraph at lines 1562--1565
[]\T1/pcr/m/n/10 coefHier() []\T1/ptm/m/n/10 di-rectly in-ter-faces to the un-d
er-ly-ing C code, and ``proves'' that \T1/ptm/m/it/10 only
[2684]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1631--1631
 []      \T1/pcr/m/n/10 warnBin = warnType, warnAsym = warnType, warnConst = wa
rnType,[] 
[2685]
Underfull \hbox (badness 1552) in paragraph at lines 1680--1682
[]\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/pcr/m/n
/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , se
e
Underfull \hbox (badness 1629) in paragraph at lines 1694--1698
[]\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault 
\T1/ptm/m/n/10 for all nu-meric
Underfull \hbox (badness 3746) in paragraph at lines 1694--1698
\T1/ptm/m/n/10 (incl []\T1/pcr/m/n/10 integer[]\T1/ptm/m/n/10 ) columns of []\T
1/pcr/m/n/10 x[]\T1/ptm/m/n/10 , aka []\T1/pcr/m/n/10 "I" []\T1/ptm/m/n/10 in r
e-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , see
[2686]
Underfull \hbox (badness 1540) in paragraph at lines 1769--1777
\T1/ptm/m/n/10 In other words, $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 is a weigh
ted mean of $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 with weights $\OML/cmm/m/it/1
0 w[]^^N[]$\T1/ptm/m/n/10 , where $\OML/cmm/m/it/10 w[]$[]\T1/pcr/m/n/10 =
[2687]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1856--1856
 []\T1/pcr/m/n/9 ## Example 2 in reference, extended  ---  different ways of "m
ixed" / "gower":[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 1860--1860
 []\T1/pcr/m/n/9 summary(d0    <- daisy(flower))  # -> the first 3 {0,1} treate
d as *N*ominal[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 1861--1861
 []\T1/pcr/m/n/9 summary(dS123 <- daisy(flower,  type = list(symm = 1:3))) # fi
rst 3 treated as *S*ymmetric[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1862--1862
 []\T1/pcr/m/n/9 stopifnot(dS123 == d0) # i.e.,  *S*ymmetric <==> *N*ominal {fo
r 2-level factor}[] 
Overfull \hbox (106.98032pt too wide) in paragraph at lines 1866--1866
 []\T1/pcr/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated *
A*symmetric binary (w/ warning)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1868--1868
 []\T1/pcr/m/n/9 summary(dA13 <- daisy(flower, type = list(asymm = c(1, 3), ord
ratio = 7)))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1876--1876
 []\T1/pcr/m/n/9 summary(dN <- daisy(Nflow)) # w/ warning: treated binary .. 1:
3 as interval[] 
Overfull \hbox (117.7803pt too wide) in paragraph at lines 1877--1877
 []\T1/pcr/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id
entical to treating them as "N" :[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 1893--1893
 []\T1/pcr/m/n/10 diana(x, diss = inherits(x, "dist"), metric = "euclidean", st
and = FALSE, 
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[2689]
[2690]
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[2692]
Underfull \hbox (badness 10000) in paragraph at lines 2212--2215
Underfull \hbox (badness 3179) in paragraph at lines 2223--2229
[][][]\T1/pcr/m/n/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also the
 [][][]\T1/pcr/m/n/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/pcr/m/n/1
0 ellipsoid []\T1/ptm/m/n/10 ob-jects.
[2693]
[2694]
Underfull \hbox (badness 10000) in paragraph at lines 2380--2383
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 fanny.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2695]
Underfull \hbox (badness 1292) in paragraph at lines 2448--2451
[]\T1/ptm/m/n/10 named vec-tor with []\T1/pcr/m/n/10 iterations[]\T1/ptm/m/n/10
 , the num-ber of it-er-a-tions needed and
[2696]
Underfull \hbox (badness 6675) in paragraph at lines 2457--2459
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
Underfull \hbox (badness 10000) in paragraph at lines 2480--2483
[][][]\T1/pcr/m/n/10 fanny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.f
anny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dissimilarity.object[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2697]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2555--2555
 []                           \T1/pcr/m/n/9 "4" = "red", "5" = "blue")[levels(f
lowerN$color)][] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 2556--2556
 []\T1/pcr/m/n/9 levels(flowerN$soil)  <- c("1" = "dry", "2" = "normal", "3" = 
"wet")[levels(flowerN$soil)][] 
[2698]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 2619--2619
 []\T1/pcr/m/n/10 medoids(x, clustering, diss = inherits(x, "dist"), USE.NAMES 
= FALSE, ...) 
[2699]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 2666--2666
 []  \T1/pcr/m/n/9 stopifnot(length(cl.k) == nrow(votes.repub), 1 <= cl.k, cl.k
 <= k, table(cl.k) >= 2)[] 
[2700]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2771--2771
 []\T1/pcr/m/n/9 ## One place to see if/how error messages are *translated* (to
 \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 de\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 / \TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 pl\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ):[] 
[2701]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 2850--2850
 []    \T1/pcr/m/n/10 variant = c("original", "o_1", "o_2", "f_3", "f_4", "f_5"
, "faster"),[] 
[2702]
[2703]
[2704]
[2705]
Overfull \hbox (85.38034pt too wide) in paragraph at lines 3078--3078
 []\T1/pcr/m/n/9 ## use obs. 1 & 16 as starting medoids -- same result (for see
d above, *and* typically) :[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3080--3080
 []\T1/pcr/m/n/9 ## no _build_ *and* no _swap_ phase: just cluster all obs. aro
und (1, 16):[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 3083--3083
 []\T1/pcr/m/n/9 keep_nms <- setdiff(names(pamx), c("call", "objective"))# .$ob
jective["build"] differ[] 
[2706]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3187--3187
 []\T1/pcr/m/n/9 axis(1, k.best, paste("best",k.best,sep="\n"), col = "red", co
l.axis = "red")[] 
[2707]
[2708]
[2709]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 3381--3381
 []           \T1/pcr/m/n/10 sub = paste("Agglomerative Coefficient = ",round(x
$ac, digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3382--3382
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2710]
Underfull \hbox (badness 10000) in paragraph at lines 3449--3452
[]\T1/ptm/m/n/10 For the den-dro-gram, more flex-i-bil-ity than via []\T1/pcr/m
/n/10 pltree() []\T1/ptm/m/n/10 is pro-vided by []\T1/pcr/m/n/10 dg <-
[2711]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 3499--3499
 []           \T1/pcr/m/n/10 sub = paste("Divisive Coefficient = ", round(x$dc,
 digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3500--3500
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2712]
[2713]
[2714]
Underfull \hbox (badness 10000) in paragraph at lines 3685--3688
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 com-po-nent as for [][][]\T1/pcr/m/n/10 pam[]
[][](*,
Underfull \hbox (badness 1448) in paragraph at lines 3685--3688
\T1/pcr/m/n/10 keep.diss=FALSE)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dist []\T1/p
tm/m/n/10 must be the dis-sim-i-lar-ity if a clus-plot is
[2715]
Underfull \hbox (badness 10000) in paragraph at lines 3748--3753
[][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 clusplot.de
fault[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 ,
[2716]
Underfull \hbox (badness 1748) in paragraph at lines 3810--3815
\T1/ptm/m/n/10 dis-patches to [][][]\T1/pcr/m/n/10 plot.hclust[][][](..)[]\T1/p
tm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/pcr/m/n/10 xx 
<-
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[][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 agnes.o
bject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 diana.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/1
0 hclust[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 plot.agnes[][][][]\T1/ptm/m/n/10 ,
[2717]
Underfull \hbox (badness 10000) in paragraph at lines 3883--3885
[]\T1/ptm/m/n/10 Available as `\T1/pcr/m/n/10 pluton.dat\T1/ptm/m/n/10 ' from t
he archive of the Uni-ver-sity of Antwer-pen,
[2718]
[2719]
Underfull \hbox (badness 10000) in paragraph at lines 4002--4005
[][][]\T1/pcr/m/n/10 summary.agnes[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ag
nes.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
[2720]
Underfull \hbox (badness 10000) in paragraph at lines 4033--4036
[][][]\T1/pcr/m/n/10 summary.clara[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cl
ara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
[2721]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 4086--4086
 []      \T1/pcr/m/n/10 digits = getOption("digits"), justify = "none", right =
 TRUE, ...)[] 
Underfull \hbox (badness 2035) in paragraph at lines 4097--4099
[]\T1/ptm/m/n/10 a []\T1/pcr/m/n/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a
 []\T1/pcr/m/n/10 summary.dissimilarity []\T1/ptm/m/n/10 one for
[2722]
[2723]
[2724]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 4290--4290
 []     \T1/pcr/m/n/10 main = NULL, sub = NULL, xlab = expression("Silhouette w
idth "* s[i]),[] 
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 []     \T1/pcr/m/n/10 cex.names = par("cex.axis"), do.n.k = TRUE, do.clus.stat
 = TRUE, ...)[] 
[2725]
[2726]
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 []\T1/pcr/m/n/9 plot(si, col = c("red", "green", "blue", "purple"))# with clus
ter-wise coloring[] 
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 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE)[] 
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 []      \T1/pcr/m/n/9 outer = TRUE, font = par("font.main"), cex = par("cex.ma
in")); frame()[] 
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 []\T1/pcr/m/n/9 c6 <- c("tomato", "forest green", "dark blue", "purple2", "gol
denrod4", "gray20")[] 
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 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE,[] 
[2727]
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 []\T1/pcr/m/n/9 str(xc1k <- xclara[ sample(nrow(xclara), size = 1000) ,]) # ro
wnames == indices[] 
[2728]
[2729]
[2730]
[2731]
[2732]
[2733]
Underfull \hbox (badness 10000) in paragraph at lines 4828--4834
[]\T1/ptm/m/n/10 Our ver-sion of the []\T1/pcr/m/n/10 xclara []\T1/ptm/m/n/10 i
s slightly more rounded than the one from
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[]\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file 
`\T1/pcr/m/n/10 xclara.dat\T1/ptm/m/n/10 ' in side
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 []\T1/pcr/m/n/9 ## Visualization: Assuming groups are defined as {1:1000}, {10
01:2000}, {2001:3000} 
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 []\T1/pcr/m/n/9 p.ID <- c(78, 1411, 2535) ## PAM\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 
s medoid indices  == pam(xclara, 3)$id.med[] 
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 [] \T1/pcr/m/n/9 ## We see 3 + 2 + 2 = 7  clear "outlier"s  or "wrong group" o
bservations:[] 
[2734]
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 [] \T1/pcr/m/n/9 ## Apart from these, what are the robust ranges of indices? -
- Robust range:[] 
[2735]) (./codetools-pkg.tex
[2736]
Chapter 21.
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 []           \T1/pcr/m/n/10 suppressParamUnused = !all, suppressFundefMismatch
 = FALSE,[] 
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 []           \T1/pcr/m/n/10 suppressLocalUnused = FALSE, suppressNoLocalFun = 
!all,[] 
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 []           \T1/pcr/m/n/10 skipWith = FALSE, suppressUndefined = dfltSuppress
Undefined,[] 
[2737]
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[]\T1/pcr/m/n/10 checkUsageEnv []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 checkUsage
Package []\T1/ptm/m/n/10 are con-ve-nience func-tions that ap-ply
[2738]
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 []\T1/pcr/m/n/10 makeConstantFolder(..., leaf, handler, call, exit, isLocal, f
oldable,[] 
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 []\T1/pcr/m/n/10 makeUsageCollector(fun, ..., name, enterLocal, enterGlobal, e
nterInternal,[] 
[2739]
[2740]
[2741]) (./foreign-pkg.tex
[2742]
Chapter 22.
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[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
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\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][]$\T1/p
cr/m/n/10 https : / / support .
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\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
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\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2743]
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[]\T1/ptm/m/n/10 a char-ac-ter string with the name of the ARFF file to read fr
om, or a
[2744]
[2745]
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[]\T1/ptm/m/n/10 A data frame with at-tributes. These will in-clude []\T1/pcr/m
/n/10 "datalabel"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "time.stamp"[]\T1/ptm/m/n/
10 ,
[2746]
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 []\T1/pcr/m/n/10 read.epiinfo(file, read.deleted = FALSE, guess.broken.dates =
 FALSE, 
[2747]
[2748]
[2749]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 458--458
 []          \T1/pcr/m/n/10 trim_values = TRUE, reencode = NA, use.missings = t
o.data.frame,[] 
[2750]
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 []          \T1/pcr/m/n/10 sub = ".", add.undeclared.levels = c("sort", "appen
d", "no"),[] 
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[]\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif-
fer-ent lev-
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\T1/ptm/m/n/10 els. For []\T1/pcr/m/n/10 "append" []\T1/ptm/m/n/10 (the de-faul
t), the first orig-i-nal value la-bel is
Underfull \hbox (badness 2269) in paragraph at lines 502--511
\T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/p
cr/m/n/10 paste0(label,
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[]\T1/ptm/m/n/10 character: the in-fix used for la-bels of fac-tor lev-els with
 du-
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\T1/ptm/m/n/10 pli-cated value la-bels in SPSS (de-fault []\T1/pcr/m/n/10 "_dup
licated_"[]\T1/ptm/m/n/10 ) if
[2751]
Underfull \hbox (badness 10000) in paragraph at lines 546--554
[]\T1/ptm/m/n/10 URL [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / 
en-[]us / windows / win32 / intl /
Underfull \hbox (badness 7613) in paragraph at lines 564--570
[]\T1/ptm/m/n/10 There may be at-tributes []\T1/pcr/m/n/10 "label.table" []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 "variable.labels"[]\T1/ptm/m/n/10 . At-tribute
[2752]
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 []\T1/pcr/m/n/9 ### hence may need some special treatment with appropriate arg
ument settings.[] 
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 []\T1/pcr/m/n/9 ### Expect lots of warnings as value labels (corresponding to 
R factor labels) are uncomplete,[] 
[2753]
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 []\T1/pcr/m/n/9 ## Long Strings (>255 chars) are imported in consecutive separ
ate variables[] 
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 []\T1/pcr/m/n/9 cat.long.string <- function(x, w=70) cat(paste(strwrap(x, widt
h=w), "\n"))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 664--664
 []\T1/pcr/m/n/9 long.string <- apply(x[,c("string_500", "STRIN0")], 1, paste, 
collapse="")[] 
[2754]
[2755]
Underfull \hbox (badness 10000) in paragraph at lines 808--809
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 []\T1/pcr/m/n/9 iris.s <- read.systat(system.file("files/Iris.syd", package="f
oreign")[1])[] 
[2756]
Underfull \hbox (badness 10000) in paragraph at lines 865--869
[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
Underfull \hbox (badness 10000) in paragraph at lines 865--869
\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][]$\T1/p
cr/m/n/10 https : / / support .
Underfull \hbox (badness 10000) in paragraph at lines 865--869
\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
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\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2757]
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 []  \T1/pcr/m/n/10 data.restore(file, print = FALSE, verbose = FALSE, env = .G
lobalEnv) 
[2758]
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 []\T1/pcr/m/n/10 write.arff(x, file, eol = "\n", relation = deparse(substitute
(x))) 
[2759]
[2760]
Underfull \hbox (badness 10000) in paragraph at lines 1072--1073
[][][]$\T1/pcr/m/n/10 https : / / www . clicketyclick . dk / databases / xbase 
/ format / data _ types .
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 []          \T1/pcr/m/n/10 convert.factors = c("labels", "string", "numeric", 
"codes"))[] 
[2761]
[2762]
Underfull \hbox (badness 10000) in paragraph at lines 1265--1271
[]\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/pcr/m/n/10 foreig
n:::writeForeignStata[]\T1/ptm/m/n/10 ,
[2763]
Underfull \hbox (badness 2088) in paragraph at lines 1291--1294
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 package="SPSS"[]\T1/ptm/m/n/10 , as a sid
e ef-fect, the dec-i-mal in-di-ca-tor is al-ways set by []\T1/pcr/m/n/10 SET
[2764]) (./lattice-pkg.tex
Chapter 23.
[2765]
Underfull \hbox (badness 2073) in paragraph at lines 114--118
\T1/ptm/m/n/10 pro-vide a holis-tic in-tro-duc-tion to the Trel-lis paradigm: [
][]$\T1/pcr/m/n/10 http : / / web . archive . org /
Underfull \hbox (badness 10000) in paragraph at lines 114--118
\T1/pcr/m/n/10 web / 20081020164041 / http : / / cm . bell-[]labs . com / cm / 
ms / departments / sia /
[2766]
[2767]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 288--288
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 292--292
 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.xyplot"),[] 
[2768]
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 []        \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defaul
t.dotplot"),[] 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 313--313
 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.barchart"),[] 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 324--324
 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.stripplot"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 348--348
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2769]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 352--352
 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.bwplot"),[] 
[2770]
[2771]
[2772]
Underfull \hbox (badness 1221) in paragraph at lines 655--658
[]\T1/ptm/m/n/10 A log-i-cal, or a list con-tain-ing com-po-nents to be used as
 ar-gu-ments to
[2773]
[2774]
[2775]
[2776]
Underfull \hbox (badness 2005) in paragraph at lines 988--1000
[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the un-used lev-els of 
fac-tors will be
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\T1/ptm/m/n/10 some-times ap-pro-pri-ate to sup-press drop-ping to pre-serve a 
use-ful lay-out.
[2777]
[2778]
Underfull \hbox (badness 1661) in paragraph at lines 1101--1107
[]\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 sho
uld be num-bers be-tween 0 and 1, giv-ing co-or-di-nates
[2779]
Underfull \hbox (badness 1097) in paragraph at lines 1227--1229
[]\T1/ptm/m/n/10 Logical flag, whether leg-end should have a
Underfull \hbox (badness 1917) in paragraph at lines 1241--1242
[]\T1/ptm/m/n/10 Space be-tween col-umn blocks, in ad-di-tion to
[2780]
[2781]
[2782]
Underfull \hbox (badness 1540) in paragraph at lines 1476--1482
[]\T1/ptm/m/n/10 A list con-tain-ing pos-si-ble ar-gu-ments to [][][]\T1/pcr/m/
n/10 plot.trellis[][][][]\T1/ptm/m/n/10 ,
[2783]
Underfull \hbox (badness 10000) in paragraph at lines 1563--1580
[][][]\T1/pcr/m/n/10 panel.dotplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.superpose[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.loess[][][][]\T1/ptm/m/n/10 ,
[2784]
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[2785]
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 []                  \T1/pcr/m/n/9 text = list(lab = as.character(unique(Orchar
dSprays$rowpos))),[] 
[2786]
Underfull \hbox (badness 2012) in paragraph at lines 1705--1707
[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/pcr/m/n/10 xyplot[]
[][][]\T1/ptm/m/n/10 , which may pass them on to
Underfull \hbox (badness 6808) in paragraph at lines 1735--1739
[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
Underfull \hbox (badness 10000) in paragraph at lines 1752--1755
[]\T1/ptm/m/n/10 style set-tings be-yond the stan-dard []\T1/pcr/m/n/10 col[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1
/ptm/m/n/10 , etc; see
[2787]
Underfull \hbox (badness 10000) in paragraph at lines 1804--1806
[]\T1/ptm/m/n/10 Gabor Grothendieck, Achim Zeileis, Deep-ayan Sarkar and Fe-lix
 An-drews
[2788]
[2789]
[2790]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045
 []            \T1/pcr/m/n/10 auto.key = lattice.getOption("default.args")$auto
.key,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2058--2058
 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.densitypl
ot"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2791]
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[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fie
d, the value of
Underfull \hbox (badness 1320) in paragraph at lines 2137--2140
[]\T1/pcr/m/n/10 lattice.getOption("histogram.breaks") []\T1/ptm/m/n/10 is firs
t checked. If
[2792]
[2793]
[2794]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 2342--2342
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
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 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.qqmath"),[] 
[2795]
[2796]
[2797]
[2798]
[2799]
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 []          \T1/pcr/m/n/10 panel = if (useRaster) lattice.getOption("panel.lev
elplot.raster")[] 
[2800]
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 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.contourpl
ot"),[] 
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[2801]
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[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
Underfull \hbox (badness 3058) in paragraph at lines 2813--2818
[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
[2802]
[2803]
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[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the col-orkey should be
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\T1/ptm/m/n/10 ren-dered as a raster im-age us-ing [][][]\T1/pcr/m/n/10 grid.ra
ster[][][][]\T1/ptm/m/n/10 . See also
Underfull \hbox (badness 10000) in paragraph at lines 2947--2949
[]\T1/ptm/m/n/10 Logical flag, passed to [][][]\T1/pcr/m/n/10 rasterGrob[][][] 
[]\T1/ptm/m/n/10 when
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[]\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gr
oups[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether raster rep-re-sen-ta-ti
ons should be used,
Underfull \hbox (badness 2772) in paragraph at lines 2997--3003
\T1/ptm/m/n/10 both for the false color im-age and the color key (if present). 
Ef-
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\T1/ptm/m/n/10 fec-tively, set-ting this to []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n
/10 changes the de-fault panel func-tion from
Underfull \hbox (badness 2486) in paragraph at lines 3021--3025
[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2804]
[2805]
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 []      \T1/pcr/m/n/10 xlim = if (is.factor(x)) levels(x) else range(x, finite
 = TRUE),[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 3127--3127
 []      \T1/pcr/m/n/10 ylim = if (is.factor(y)) levels(y) else range(y, finite
 = TRUE),[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 3128--3128
 []      \T1/pcr/m/n/10 zlim = if (is.factor(z)) levels(z) else range(z, finite
 = TRUE),[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3139--3139
 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
cloud"),[] 
[2806]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 3154--3154
 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.wireframe"),[] 
[2807]
Underfull \hbox (badness 2913) in paragraph at lines 3219--3224
[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
Underfull \hbox (badness 3058) in paragraph at lines 3219--3224
[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
Underfull \hbox (badness 2418) in paragraph at lines 3225--3225
[]\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepan
el[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 
groups[]\T1/ptm/m/n/10 ,
[2808]
[2809]
[2810]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3506 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                
[2811]
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 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
splom"),[] 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 3571--3571
 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.parallel"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2812]
[2813]
[2814]
[2815]
[2816]
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 []\T1/pcr/m/n/10 oneway(formula, data, location=mean, spread=function(x) sqrt(
var(x))) 
[2817]
[2818]
Underfull \hbox (badness 2277) in paragraph at lines 3992--3996
[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings by
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\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2819]
Overfull \hbox (120.78088pt too wide) in paragraph at lines 4089--4089
 []               \T1/pcr/m/n/10 symbol = palette.colors(palette = "Okabe-Ito")
[c(6, 2, 4, 7, 3, 5, 8)],[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 4091--4091
 []               \T1/pcr/m/n/10 region = hcl.colors(14, palette = "YlGnBu", re
v = TRUE),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 4098--4098
 []             \T1/pcr/m/n/10 reference = "gray90", bg = "transparent", fg = "
black",[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 4099--4099
 []             \T1/pcr/m/n/10 strip.bg = rep("gray95", 7), strip.fg = rep("gra
y70", 7),[] 
[2820]
[2821]
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 []\T1/pcr/m/n/10 trellis.par.set(name, value, ..., theme, warn = TRUE, strict 
= FALSE) 
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[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
[2822]
Underfull \hbox (badness 3219) in paragraph at lines 4278--4280
[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
Underfull \hbox (badness 1728) in paragraph at lines 4295--4299
[]\T1/pcr/m/n/10 theme[]\T1/ptm/m/n/10 ). These are used to mod-ify the cur-ren
t set-tings (ob-tained by
[2823]
Underfull \hbox (badness 5161) in paragraph at lines 4360--4364
[]\T1/ptm/m/n/10 The ac-tual list of the com-po-nents in []\T1/pcr/m/n/10 trell
is.settings []\T1/ptm/m/n/10 has not been fi-nal-ized,
Underfull \hbox (badness 4913) in paragraph at lines 4360--4364
\T1/ptm/m/n/10 so I'm not at-tempt-ing to list them here. The cur-rent value ca
n be ob-tained by
[2824]
Underfull \hbox (badness 1067) in paragraph at lines 4478--4488
[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/pcr/m/n/10 col []\T1/ptm/m/n/
10 is used for com-po-nents []\T1/pcr/m/n/10 "plot.symbol"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4478--4488
[]\T1/pcr/m/n/10 "plot.line"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "plot.polygon"[
]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1735) in paragraph at lines 4478--4488
[]\T1/pcr/m/n/10 "superpose.line"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "super
pose.polygon"[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 col.points
Underfull \hbox (badness 10000) in paragraph at lines 4478--4488
[]\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , but is used 
only for []\T1/pcr/m/n/10 "plot.symbol" []\T1/ptm/m/n/10 and
Underfull \hbox (badness 5231) in paragraph at lines 4478--4488
[]\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 . Sim-i-larly, []\T1/pcr/m/
n/10 col.line []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col []\T1/ptm/m/n/10
 for
[2825]
Underfull \hbox (badness 1701) in paragraph at lines 4503--4506
[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 pl
ot.symbol[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 plot.polygon[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4506--4508
[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 
plot.polygon []\T1/ptm/m/n/10 and
[2826]
Underfull \hbox (badness 2932) in paragraph at lines 4649--4654
[]\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 aspect[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 between[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 grid[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 skip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 ,
[2827]
[2828]
[2829]
[2830]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4925--4925
 []\T1/pcr/m/n/9 p12 <- densityplot( ~ height | voice.part, data = singer, xlab
 = "Height")[] 
[2831]
[2832]
Underfull \hbox (badness 1558) in paragraph at lines 5048--5048
[]\T1/pcr/m/n/10 main[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 page[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 par.strip.text[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 skip
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1270) in paragraph at lines 5048--5048
[]\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yscale.co
mponents[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 axis[]\T1/ptm/m/n/10 , []\T1/pcr/m/
n/10 par.settings[]\T1/ptm/m/n/10 ,
Underfull \vbox (badness 1092) has occurred while \output is active
[2833]
Underfull \hbox (badness 10000) in paragraph at lines 5105--5108
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 trellis[]\T1/ptm/m/n/10 ,
 by de-fault plot-ted by []\T1/pcr/m/n/10 print.trellis[]\T1/ptm/m/n/10 .
[2834]
[2835]
Underfull \hbox (badness 1442) in paragraph at lines 5232--5235
[]\T1/pcr/m/n/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gle
s via rect-an-gles. []\T1/pcr/m/n/10 print.shingle []\T1/ptm/m/n/10 and
[2836]
[2837]
[2838]
[2839]
[2840]
Underfull \hbox (badness 3646) in paragraph at lines 5571--5574
[][][]\T1/pcr/m/n/10 Lattice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 draw.
key[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 trellis.par.get[][][][]\T1/ptm
/m/n/10 , and [][][]\T1/pcr/m/n/10 xyplot[][][][]\T1/ptm/m/n/10 , specif-i-call
y the en-try for
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 []              \T1/pcr/m/n/10 bg = trellis.par.get("strip.background")$col[wh
ich.given],[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 5602--5602
 []              \T1/pcr/m/n/10 fg = trellis.par.get("strip.shingle")$col[which
.given],[] 
[2841]
Underfull \hbox (badness 10000) in paragraph at lines 5684--5687
[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
Underfull \hbox (badness 2103) in paragraph at lines 5684--5687
[]\T1/pcr/m/n/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on the
 left of pan-els us-ing
[2842]
Underfull \hbox (badness 1635) in paragraph at lines 5710--5715
[]\T1/pcr/m/n/10 strip.default []\T1/ptm/m/n/10 is called for its side-effect, 
which is to draw a strip ap-pro-pri-ate for
[2843]
[2844]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5861--5861
 []\T1/pcr/m/n/10 panel.identify.qqmath(x, distribution, groups, subscripts, la
bels,[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 5875--5875
 []\T1/pcr/m/n/10 panel.link.splom(threshold = 18, verbose = getOption("verbose
"), ...)[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 5876--5876
 []\T1/pcr/m/n/10 panel.brush.splom(threshold = 18, verbose = getOption("verbos
e"), ...)[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 5879--5879
 []\T1/pcr/m/n/10 trellis.vpname(name = c("position", "split", "split.location"
, "toplevel",[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 5882--5882
 []                        \T1/pcr/m/n/10 "xlab", "ylab", "xlab.top", "ylab.rig
ht", "page"),[] 
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 []               \T1/pcr/m/n/10 side = c("left", "top", "right", "bottom", "in
side"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 5890--5890
 []                 \T1/pcr/m/n/10 which.given = lattice.getStatus("current.whi
ch.given",[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5891--5891
 []                                                 \T1/pcr/m/n/10 prefix = pre
fix),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 5892--5892
 []                 \T1/pcr/m/n/10 which.panel = lattice.getStatus("current.whi
ch.panel",[] 
[2845]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5893--5893
 []                                                 \T1/pcr/m/n/10 prefix = pre
fix),[] 
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 []                 \T1/pcr/m/n/10 column = lattice.getStatus("current.focus.co
lumn",[] 
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[]\T1/ptm/m/n/10 variables defin-ing the con-tents of the panel. In the case of
Underfull \hbox (badness 2376) in paragraph at lines 5921--5923
[]\T1/ptm/m/n/10 an op-tional vec-tor of la-bels as-so-ci-ated with each point.
 De-faults to
[2846]
Underfull \hbox (badness 2538) in paragraph at lines 6045--6049
\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 trellis.focus[]\T1/ptm/m/n/10 , the de-faul
t is []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 in in-ter-ac-tive mode, and
Underfull \hbox (badness 4205) in paragraph at lines 6056--6063
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , e
x-tra pa-ram-e-ters are passed on to
Underfull \hbox (badness 4792) in paragraph at lines 6056--6063
[]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 trellis.switchFocus[]\T1/ptm/m/n/10 , the
se are used (in com-bi-na-tion with
[2847]
[2848]
Underfull \hbox (badness 10000) in paragraph at lines 6209--6213
[][][]\T1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Latt
ice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.trellis[][][][]\T1/ptm/m
/n/10 , [][][]\T1/pcr/m/n/10 trellis.currentLayout[][][][]\T1/ptm/m/n/10 ,
[2849]
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[2850]
[2851]
Underfull \hbox (badness 4242) in paragraph at lines 6356--6361
[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
[2852]
[2853]
Underfull \hbox (badness 3601) in paragraph at lines 6472--6477
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/pcr/m/n/10 x []\T1/ptm/m
/n/10 for ev-ery level of []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 (or the other way
 round
Underfull \hbox (badness 2486) in paragraph at lines 6472--6477
\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 horizontal=FALSE[]\T1/ptm/m/n/10 ). By de-fa
ult, the ac-tual box-plot statis-tics are cal-cu-lated us-ing
[2854]
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 []             \T1/pcr/m/n/10 shade.colors.palette = trellis.par.get("shade.co
lors")$palette,[] 
[2855]
[2856]
[2857]
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[]\T1/ptm/m/n/10 All three num-bers should be be-tween 0 and 1. The
Underfull \hbox (badness 10000) in paragraph at lines 6762--6764
[]\T1/ptm/m/n/10 numeric, be-tween 0 and 1, giv-ing a min-i-mum sat-u-ra-tion i
n
[2858]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6858--6858
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Inferno"),[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 6861--6861
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Dark Mint"),[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6864--6864
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Harmonic"),[] 
[2859]
[2860]
[2861]
[2862]
[2863]
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[]\T1/pcr/m/n/10 panel.levelplot.raster []\T1/ptm/m/n/10 is an al-ter-na-tive p
anel func-tion that uses the raster draw-
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\T1/ptm/m/n/10 can only ren-der data on an eq-ui-s-paced grid), but can be more
 ef-fi-cient. When us-ing
[2864]
[2865]
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 []                 \T1/pcr/m/n/10 varname = NULL, limits, at = NULL, labels = 
NULL,[] 
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[]\T1/ptm/m/n/10 The panel func-tion used for the di-ag-o-nals. See ar-gu-ments
 to
Underfull \hbox (badness 1584) in paragraph at lines 7330--7334
[]\T1/pcr/m/n/10 diag.panel.splom []\T1/ptm/m/n/10 to know what ar-gu-ments thi
s func-tion is passed
[2866]
[2867]
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\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 diag.panel []\T1/ptm/m/n/10 from []\T1/pcr/
m/n/10 panel.pairs[]\T1/ptm/m/n/10 . Cur-rently ig-nored by
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 []              \T1/pcr/m/n/9 function(i,j) hcl.colors(11)[i+j-1]) ## rainbow(
11, start=.12, end=.5)[i+j-1])[] 
[2868]
[2869]
Underfull \hbox (badness 2012) in paragraph at lines 7601--7604
[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
[2870]
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 []                  \T1/pcr/m/n/9 panel.qqmath(..., f.value = ppoints(100), ta
ils.n = 50))[] 
[2871]
[2872]
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[]\T1/pcr/m/n/10 "lm" []\T1/ptm/m/n/10 adds a lin-ear re-gres-sion line (same a
s [][][]\T1/pcr/m/n/10 panel.lmline[][][][]\T1/ptm/m/n/10 , ex-cept
Underfull \hbox (badness 1163) in paragraph at lines 7836--7844
\T1/ptm/m/n/10 for de-fault graph-i-cal pa-ram-e-ters). []\T1/pcr/m/n/10 "loess
" []\T1/ptm/m/n/10 adds a loess fit (same as
[2873]
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[]\T1/ptm/m/n/10 Most gen-er-ally, []\T1/pcr/m/n/10 grid []\T1/ptm/m/n/10 can b
e a list of ar-gu-ments to be sup-plied to
[2874]
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 []       \T1/pcr/m/n/9 ylab = list(c("horizontal=TRUE", "horizontal=FALSE"), y
 = c(1/6, 4/6)),[] 
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 []       \T1/pcr/m/n/9 scales = list(alternating = c(0, 2), tck = c(0, 0.7), d
raw = FALSE),[] 
[2875]
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 []        \T1/pcr/m/n/10 font, fontfamily, fontface, cex, ..., identifier, nam
e.type)[] 
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 []        \T1/pcr/m/n/10 adj = c(0.5, 0.5), pos = NULL, offset = 0.5, ..., ide
ntifier, name.type)[] 
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[2876]
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[]\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 alpha[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1/ptm/m/n/10 , 
[]\T1/pcr/m/n/10 fill[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 , 
[]\T1/pcr/m/n/10 cex[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lineheight[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 font[]\T1/ptm/m/n/10 ,
[2877]
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 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.rect, col = 4, alpha = 0.5, wid
th = 0.1, height = 0.1)[] 
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 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.polygon, col = 4, alpha = 0.5, 
rule = "evenodd")[] 
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 []\T1/pcr/m/n/9 ## Example adapted from https://journal.r-project.org/articles
/RJ-2012-017/[] 
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 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polygon,  rule = "none",
 col = "grey")[] 
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 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polypath, rule = "windin
g", col = "grey")[] 
[2878]
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 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polypath, rule = "evenod
d", col = "grey")[] 
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 []\T1/pcr/m/n/10 panel.grid(h=3, v=3, col, col.line, lty, lwd, x, y, ..., iden
tifier = "grid")[] 
[2879]
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[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
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 []           \T1/pcr/m/n/9 panel.superpose(x, y, ..., panel.groups = panel.ave
rage, grid = FALSE,[] 
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 []                                \T1/pcr/m/n/9 args = list(mean = mean(x), sd
 = sd(x)), ...)[] 
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[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/pcr/m/n/10 panel.super
pose
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[]\T1/ptm/m/n/10 from []\T1/pcr/m/n/10 panel.superpose.2[]\T1/ptm/m/n/10 , and 
to []\T1/pcr/m/n/10 panel.groups []\T1/ptm/m/n/10 from
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 []\T1/pcr/m/n/10 prepanel.default.bwplot(x, y, horizontal, nlevels, origin, st
ack, ...)[] 
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 []\T1/pcr/m/n/10 prepanel.default.histogram(x, breaks, equal.widths, type, nin
t, ...)[] 
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 []\T1/pcr/m/n/10 prepanel.default.densityplot(x, darg, groups, weights, subscr
ipts, ...)[] 
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[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/pcr/m/n/10 type [
]\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in
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[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
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[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
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 []                \T1/pcr/m/n/9 ans$bottom$labels$labels <- parse(text = ans$b
ottom$labels$labels)[] 
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 []\T1/pcr/m/n/9 xyplot(sunspot.year ~ time(sunspot.year) | equal.count(time(su
nspot.year)),[] 
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\T1/pcr/m/n/10 condition []\T1/ptm/m/n/10 for 2-D, and []\T1/pcr/m/n/10 left, r
ight.x, right.y, left.name, right.x.name,
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[]\T1/ptm/m/n/10 Factor with lev-els []\T1/pcr/m/n/10 "Svansota"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Manchuria"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 475"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "Velvet"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Peatland"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Glabron"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 4
57"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Wisconsin No. 38"[]\T1/ptm/m/n/10 ,
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                
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\T1/pcr/m/n/10 diseases[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Diabetes[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 Flu and pneumonia[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 He
art disease[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Lower
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 []        \T1/pcr/m/n/9 par.settings = simpleTheme(pch = 16), auto.key = list(
columns = 2),[] 
[2911]
[2912]) (./mgcv-pkg.tex
Chapter 24.
[2913]
[2914]
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 []\T1/pcr/m/n/10 bam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL, 
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 []    \T1/pcr/m/n/10 paraPen=NULL,chunk.size=10000,rho=0,AR.start=NULL,discret
e=FALSE,[] 
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 []    \T1/pcr/m/n/10 coef=NULL,drop.unused.levels=TRUE,G=NULL,fit=TRUE,drop.in
tercept=NULL,[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
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[][][]\T1/pcr/m/n/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
[2920]
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 []\T1/pcr/m/n/9 system.time(b2 <- bam(y ~ s(x0,bs=bs,k=k)+s(x1,bs=bs,k=k)+s(x2
,bs=bs,k=k)+[] 
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[2922]
[2923]
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[]\T1/ptm/m/n/10 The link func-tion: one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cloglog" 
[]\T1/ptm/m/n/10 and
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[2925]
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[]\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t
ing en-vi-ron-ment vari-able
[2926]
[2927]
Underfull \hbox (badness 1158) in paragraph at lines 814--816
[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
[2928]
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[]\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro
-duc-tion with R (2nd edi-tion).
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h + 2*b$family$data$
q^.5),col=2)[] 
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h - 2*b$family$data$
q^.5),col=2)[] 
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 []    \T1/pcr/m/n/9 plot(b$y[oy],rs[oy,ii[1]],ylim=c(-3,3),type="l",ylab="scor
e residuals",[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1367--1367
 []\T1/pcr/m/n/9 bs <- gam(cbind(time,strata)~s(age,by=sex)+sex+s(nodes)+perfor
+rx+obstruct[] 
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 []\T1/pcr/m/n/9 if (i==1) plot(bs$family$data$tr[ind],exp(-bs$family$data$h[in
d]),type="l",[] 
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 []      \T1/pcr/m/n/9 lines(bs$family$data$tr[ind],exp(-bs$family$data$h[ind])
,lwd=2,col=i)[] 
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[2938]
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 []\T1/pcr/m/n/9 b <- gam(t~s(x0)+s(x1)+s(x2,k=15)+s(x3),family=cox.ph,weights=
d,data=surv)[] 
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[2939]
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 []  \T1/pcr/m/n/9 if (inter) prg <- txtProgressBar(min = 0, max = length(sid),
 initial = 0,[] 
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 []    \T1/pcr/m/n/9 if (um[[et]][1]==max(tr)&&um[[status]][1]==1) um[[event]][
nrow(um)] <- 1[] 
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[2941]
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 []\T1/pcr/m/n/9 pd <- data.frame(lapply(X=di,FUN=app,t=di$day,to=te)) ## inter
polate to te[] 
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 []\T1/pcr/m/n/9 bd <- bam(y~s(x0)+ s(x1) + s(x1,fac,bs="sz",k=5)+s(x2,k=20),di
screte=TRUE)[] 
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[2950]
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 []\T1/pcr/m/n/10 fixDependence(X1,X2,tol=.Machine$double.eps^.5,rank.def=0,str
ict=FALSE) 
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 []\T1/pcr/m/n/10 gam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL,[] 
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[]\T1/ptm/m/n/10 A GAM for-mula, or a list of for-mu-lae (see [][][]\T1/pcr/m/n
/10 formula.gam[][][] []\T1/ptm/m/n/10 and also
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aken from
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
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\T1/ptm/m/n/10 eral lin-ear func-tion-als of smooths, via the sum-ma-tion con-v
en-tion mech-a-nism de-scribed in
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[][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
gamObject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
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 []\T1/pcr/m/n/10 gam.control(nthreads=1,ncv.threads=1,irls.reg=0.0,epsilon = 1
e-07, 
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 []            \T1/pcr/m/n/10 maxit = 200,mgcv.tol=1e-7,mgcv.half=15, trace = F
ALSE,[] 
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 []         \T1/pcr/m/n/10 mustart = NULL, offset = rep(0, nobs), U1 = diag(nco
l(x)),[] 
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 []         \T1/pcr/m/n/10 printWarn=TRUE,scoreType="REML",null.coef=rep(0,ncol
(x)),[] 
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 []         \T1/pcr/m/n/10 pearson.extra=0,dev.extra=0,n.true=-1,Sl=NULL,nei=NU
LL,...)[] 
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[]\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/pcr/m/n/10 gam []\T1/ptm
/m/n/10 mod-els us-ing []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (
see
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 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
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[]\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix
ed penalty, if
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 []  \T1/pcr/m/n/9 mod <- gam(y~s(a,bs="re")+s(b,bs="re")+s(a,b,bs="re")+s(x0,i
d=1)+s(x1,id=1)+[] 
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[2997]
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 []\T1/pcr/m/n/10 gamlss.gH(X, jj, l1, l2, i2, l3 = 0, i3 = 0, l4 = 0, i4 = 0, 
d1b = 0, 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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[]\T1/ptm/m/n/10 In the event of []\T1/pcr/m/n/10 lme []\T1/ptm/m/n/10 con-ver-
gence fail-ures, con-sider mod-i-fy-ing
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[3003]
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[][][]\T1/pcr/m/n/10 magic[][][] []\T1/ptm/m/n/10 for an al-ter-na-tive for cor
-re-lated data, [][][]\T1/pcr/m/n/10 te[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gam[][][][]\T1/ptm
/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 n
egbin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 vis.gam[][][][]\T1/ptm/m/n/1
0 ,[][][]\T1/pcr/m/n/10 pdTens[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gamm4 [
]\T1/ptm/m/n/10 ( [][]$\T1/pcr/m/n/10 https : / / cran . r-[]project .
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[]\T1/ptm/m/n/10 If `outer' it-er-a-tion has been used to fit the model (see []
[][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 ar-gu-ment
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[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
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 []\T1/pcr/m/n/10 ginla(G,A=NULL,nk=16,nb=100,J=1,interactive=FALSE,integ=0,app
rox=0) 
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[]\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/pcr/m/n/10 gam(..
.,fit=FALSE) []\T1/ptm/m/n/10 or
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 []  \T1/pcr/m/n/9 ## example using a scale location model for the motorcycle d
ata. A simple[] 
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 []      \T1/pcr/m/n/9 } else lines(xg,predict(din,xg)$y,col=lcol[j],lwd=lwd[j]
,lty=lty[j])[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6233--6233
 []  \T1/pcr/m/n/9 fv <- predict(b,se=TRUE) ## usual Gaussian approximation, fo
r comparison[] 
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 []       \T1/pcr/m/n/9 (1+exp(-10*(x[201:300]-.5)))-0.9933071) + z*(1-z)*5 + r
norm(100)*.4[] 
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 []\T1/pcr/m/n/10 jagam(formula,family=gaussian,data=list(),file,weights=NULL,n
a.action, 
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 []\T1/pcr/m/n/10 control=gam.control(),centred=TRUE,sp.prior = "gamma",diagona
lize=FALSE)[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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 []\T1/pcr/m/n/10 ldTweedie(y,mu=y,p=1.5,phi=1,rho=NA,theta=NA,a=1.001,b=1.999,
all.derivs=FALSE) 
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 []\T1/pcr/m/n/9 "The world is ruled by idiots because only an idiot would want
 to rule the world.",[] 
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 []      \T1/pcr/m/n/10 .Machine$double.eps^0.5),extra.rss=0,n.score=length(y),
nthreads=1)[] 
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[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
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[3054]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 8133--8133
 []\T1/pcr/m/n/9 ## Alternative, better scaling example, using the discrete opt
ion with bam...[] 
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 []\T1/pcr/m/n/9 for (sim in c(1,7)) { ## cycle over uncorrelated and correlate
d covariates[] 
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 []    \T1/pcr/m/n/9 dat1[[dname[i]]][dat1[[by.name]]] <- mean(dat1[[dname[i]]]
,na.rm=TRUE)[] 
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[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/pcr/m/n/10 Dim
.pdIndot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdIdnot[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 9533--9536
[]\T1/pcr/m/n/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 logDet.pd
Idnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdConstruct.pdIdnot[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3118) in paragraph at lines 9533--9536
[]\T1/pcr/m/n/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdMatrix.p
dIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 solve.pdIdnot[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 summary.pdIdnot[]\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 These func-tions ([]\T1/pcr/m/n/10 pdTens[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdFactor.p
dTens[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3108) in paragraph at lines 9589--9592
[]\T1/pcr/m/n/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdTens
 []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 summary.pdTens[]\T1/ptm/m/n/10 ) would n
ot nor-mally be
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 []\T1/pcr/m/n/10 plot(x,residuals=FALSE,rug=NULL,se=TRUE,pages=0,select=NULL,s
cale=-1,[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 9813--9813
 []         \T1/pcr/m/n/10 trans=I,seWithMean=FALSE,unconditional=FALSE,by.resi
ds=FALSE,[] 
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[]\T1/ptm/m/n/10 just won't let you do it. In this case, the quick-est op-tion 
is some-times to clone the
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 []        \T1/pcr/m/n/10 na.action=na.pass,cluster=NULL,discrete=TRUE,n.thread
s=1,gc.level=0,...)[] 
Underfull \hbox (badness 1062) in paragraph at lines 10218--10222
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 type=="terms" []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 type="iterms" []\T1/ptm/m/n/10 then terms (smooth or para-
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 []        \T1/pcr/m/n/10 na.action=na.pass,unconditional=FALSE,iterms.type=NUL
L,...)[] 
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 []\T1/pcr/m/n/9 x1 <- seq(.2,.8,length=m1);x2 <- seq(.2,.8,length=m2) ## margi
nal grid points[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 10513--10513
 []\T1/pcr/m/n/9 df <- data.frame(x0=rep(.5,n),x1=rep(x1,m2),x2=rep(x2,each=m1)
,x3=rep(0,n))[] 
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 []  \T1/pcr/m/n/9 Xi[,(i-1)*9+1:9+1] <- Xp[,(i-1)*9+1:9+1] ## Xi%*%coef(b) = s
mooth deriv i[] 
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[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
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\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
Underfull \hbox (badness 1975) in paragraph at lines 10676--10681
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
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[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
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\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
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[]\T1/ptm/m/n/10 The smooth ob-ject will be largely what is re-turned from
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[][][]\T1/pcr/m/n/10 smooth.construct.so.smooth.spec[][][][]\T1/ptm/m/n/10 , al
-though el-e-ments []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 S [
]\T1/ptm/m/n/10 are not needed,
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[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
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Underfull \hbox (badness 1946) in paragraph at lines 11212--11219
[]\T1/ptm/m/n/10 The sec-ond method rep-re-sents the con-ven-tional ran-dom ef-
fects in a GAM in the same
Underfull \hbox (badness 2221) in paragraph at lines 11212--11219
\T1/ptm/m/n/10 way that the smooths are rep-re-sented --- as pe-nal-ized re-gre
s-sion terms. This method
Underfull \hbox (badness 2042) in paragraph at lines 11212--11219
\T1/ptm/m/n/10 can be used with [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10
 by mak-ing use of []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms in a 
model: see
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[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/pcr/m/n
/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/pcr/m/n/10 gam[][][] []\T1
/ptm/m/n/10 can be used:
Underfull \hbox (badness 5862) in paragraph at lines 11220--11223
\T1/ptm/m/n/10 see [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 . If s
mooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
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 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11296--11296
 []\T1/pcr/m/n/9 ## The effect of the new factor levels (or any interaction inv
olving them)[] 
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[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/pcr/m/n/
10 "deviance"[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/10 s(..., k=-1,fx=FALSE,bs="tp",m=NA,by=NA,xt=NULL,id=NULL,sp=NU
LL,pc=NULL) 
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 []  \T1/pcr/m/n/9 true <- mu + (del * sigma) * sinh((1/del) * asinh(qnorm(qq))
 + (eps/del))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12016--12016
 []\T1/pcr/m/n/9 b <- gam(list(accel~s(times, k=20, bs = "ad"), ~s(times, k = 1
0), ~1, ~1),[] 
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[]\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to
 model ma-trix X, or, if
Overfull \hbox (36.78088pt too wide) in paragraph at lines 12127--12127
 []\T1/pcr/m/n/10 Sl.initial.repara(Sl, X, inverse = FALSE, both.sides = TRUE, 
cov = TRUE,[] 
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[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
Underfull \hbox (badness 10000) in paragraph at lines 12184--12188
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
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 [] \T1/pcr/m/n/9 range(er$values-um$values[ind]);range(abs(er$vectors)-abs(um$
vectors[,ind]))[] 
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[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
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\T1/ptm/m/n/10 The last en-try will be the []\T1/pcr/m/n/10 by []\T1/ptm/m/n/10
 vari-able, if []\T1/pcr/m/n/10 object$by []\T1/ptm/m/n/10 is not []\T1/pcr/m/n
/10 "NA"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 1502) in paragraph at lines 12428--12440
[]\T1/pcr/m/n/10 cs.smooth.spec []\T1/ptm/m/n/10 (cu-bic re-gres-sion splines w
ith shrinkage-to-zero); []\T1/pcr/m/n/10 cc.smooth.spec
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[]\T1/ptm/m/n/10 method is used if there is no more spe-cific method avail-able
. Plot meth-ods can be
Underfull \hbox (badness 2970) in paragraph at lines 12445--12449
\T1/ptm/m/n/10 added for spe-cific smooth classes, see source code for []\T1/pc
r/m/n/10 mgcv:::plot.sos.smooth[]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of on
e or two vari-ables, spec-i-fied via terms like
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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 []  \T1/pcr/m/n/9 b <- gam(y~s(x0,bs=bs,m=c(4,2))+s(x1,bs=bs)+s(x2,k=15,bs=bs,
m=c(4,3,0))+[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12865--12865
 []  \T1/pcr/m/n/9 ## now a model with first order penalty evaluated over (-.5,
1.5) (black)[] 
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 []  \T1/pcr/m/n/9 ## penalty defined on (-.5,1.5) gives plausible predictions 
and intervals[] 
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 []  \T1/pcr/m/n/9 ## penalty defined on whole real line gives constant width i
ntervals away[] 
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 []  \T1/pcr/m/n/9 ## penalty defined only over the data interval (0,1) gives w
ild and wide[] 
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 []  \T1/pcr/m/n/9 ## extrapolation since penalty has been \TS1/cmtt/m/n/9 `\T1
/pcr/m/n/9 turned off\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 outside data range:[] 
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a
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\T1/ptm/m/n/10 term []\T1/pcr/m/n/10 s(...,bs="cr",...)[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 s(...,bs="cs",...) []\T1/ptm/m/n/10 or
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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 []\T1/pcr/m/n/9 b <- gam(y~s(x,z,bs="ds",m=c(1,.5),k=50),data=data)  ## first 
deriv penalty[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 13170--13170
 []\T1/pcr/m/n/9 b1 <- gam(y~s(x,z,bs="ds",m=c(2,.5),k=50),data=data) ## modifi
ed 2nd deriv[] 
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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 []\T1/pcr/m/n/9 b <- gam(crime ~ s(district,bs="mrf",k=20,xt=xt),data=columb,m
ethod="REML")[] 
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 smooth.construct []\T1/ptm/m/n/10 met
hod a smooth spec-i-fi-ca-tion ob-
Underfull \hbox (badness 3312) in paragraph at lines 13793--13796
\T1/ptm/m/n/10 ject, usu-ally gen-er-ated by a term []\T1/pcr/m/n/10 s(x,...,bs
="re",)[]\T1/ptm/m/n/10 . For the
Underfull \hbox (badness 7099) in paragraph at lines 13793--13796
[]\T1/pcr/m/n/10 predict.Matrix []\T1/ptm/m/n/10 method an ob-ject of class []\
T1/pcr/m/n/10 "random.effect"
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 []\T1/pcr/m/n/9 b <- c(rnorm(nb/2)*2,rnorm(nb/2)*.5) ## random effect now with
 2 variances[] 
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[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
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[]\T1/pcr/m/n/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a
 []\T1/pcr/m/n/10 gam []\T1/ptm/m/n/10 for-
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 []\T1/pcr/m/n/9 ## notice NULL element in \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 xt\TS1
/pcr/m/n/9 ' \T1/pcr/m/n/9 list - to indicate no xt object for "cr" basis...[] 
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[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths on th
e sphere, via terms like
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[]\T1/ptm/m/n/10 method an ob-ject of class []\T1/pcr/m/n/10 "sz.interaction" [
]\T1/ptm/m/n/10 pro-duced by the
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[]\T1/ptm/m/n/10 The terms can have a smooth-ing pa-ram-e-ter per smooth, or a 
sin-gle smooth-ing pa-ram-e-
Overfull \hbox (128.58029pt too wide) in paragraph at lines 14480--14480
 []\T1/pcr/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs
="sz",id=1),data=dat,method="REML")[] 
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[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of an
y num-ber of vari-ables, spec-i-fied via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14671--14673
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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Underfull \hbox (badness 10000) in paragraph at lines 14962--14964
[]\T1/pcr/m/n/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see
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Underfull \hbox (badness 10000) in paragraph at lines 14996--15000
[][][]\T1/pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Duchon.spline[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cubic.regression.spline[][][][]\T1/ptm/m/n/
10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14996--15000
[][][]\T1/pcr/m/n/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 d.sp
line[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 mrf[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 soap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Spherical
.Spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 adaptive.smooth[][][][]\T1
/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14996--15000
[][][]\T1/pcr/m/n/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
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Overfull \hbox (48.78088pt too wide) in paragraph at lines 15364--15364
 []\T1/pcr/m/n/10 spasm.sp(object,sp,w=rep(1,object$nobs),get.trH=TRUE,block=0,
centre=FALSE)[] 
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Overfull \hbox (12.78088pt too wide) in paragraph at lines 15498--15498
 []                  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars
"),...)[] 
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Underfull \hbox (badness 4846) in paragraph at lines 15629--15632
[]\T1/ptm/m/n/10 The es-ti-mated co-vari-ance ma-trix of the pa-ram-e-ters (or 
es-ti-ma-tors if
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 []\T1/pcr/m/n/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL,
unconditional=FALSE, ...)[] 
[3204]
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[]\T1/ptm/m/n/10 Basically, just ex-tracts []\T1/pcr/m/n/10 object$Ve[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 object$Vp []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 object
$Vc []\T1/ptm/m/n/10 (if avail-able) from a
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Overfull \hbox (54.78088pt too wide) in paragraph at lines 17059--17059
 []\T1/pcr/m/n/10 XWXd(X,w,k,ks,ts,dt,v,qc,nthreads=1,drop=NULL,ar.stop=-1,ar.r
ow=-1,ar.w=-1, 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 17061--17061
 []\T1/pcr/m/n/10 XWyd(X,w,y,k,ks,ts,dt,v,qc,drop=NULL,ar.stop=-1,ar.row=-1,ar.
w=-1,lt=NULL)[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 17063--17063
 []\T1/pcr/m/n/10 diagXVXd(X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,rt=
NULL)[] 
[3208]
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[]\T1/ptm/m/n/10 Negative to ig-nore. Oth-er-wise sum rows
Underfull \hbox (badness 1668) in paragraph at lines 17083--17084
[]\T1/pcr/m/n/10 (ar.stop[i-1]+1):ar.stop[i] []\T1/ptm/m/n/10 of the rows se-le
cted by []\T1/pcr/m/n/10 ar.row
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Underfull \vbox (badness 10000) has occurred while \output is active
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 17271--17271
 []\T1/pcr/m/n/9 ## 1. If the zero inflation rate becomes decoupled from the li
near predictor,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 17272--17272
 []\T1/pcr/m/n/9 ## it is possible for the linear predictor to be almost unboun
ded in regions[] 
[3212]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 17284--17284
 []\T1/pcr/m/n/9 ## 3. Refit fixing the theta parameters at their estimated val
ues, to check we[] 
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[3215]) (./nlme-pkg.tex
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Chapter 25.
[3217]
Underfull \hbox (badness 1009) in paragraph at lines 78--87
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 448--448
 []  \T1/pcr/m/n/9 lme(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
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[3224]
[3225]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 589--589
 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 251-254 ---------------------------
---------------[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 605--605
 []\T1/pcr/m/n/9 # Compare an "lme" object with a "gls" object (test would be n
on-sensical!)[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 608--608
 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 222-225 ---------------------------
---------------[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 615--615
 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 352-365 ---------------------------
---------------[] 
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[3231]
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 1078--1078
 []                  \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxil
lary fissure"),[] 
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[3234]
Underfull \hbox (badness 5446) in paragraph at lines 1140--1142
[]\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 http://stat.gamma.rug.nl/snijders/multilevel
.htm[]\T1/ptm/m/n/10 ', the first edi-tion of
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[3237]
[3238]
[3239]
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[3241]
Underfull \hbox (badness 10000) in paragraph at lines 1617--1620
[][][]\T1/pcr/m/n/10 lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fixed.
effects.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ranef.lmList[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.ranef.lmList[][][][]\T1/ptm/m/n/10 
,
Underfull \hbox (badness 3780) in paragraph at lines 1634--1636
[]\T1/ptm/m/n/10 This method func-tion ex-tracts the co-ef-fi-cients as-so-ci-a
ted with each com-po-nent of the
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[3243]
[3244]
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[3246]
Underfull \hbox (badness 2042) in paragraph at lines 1975--1981
\T1/ptm/m/n/10 is in-ner to the []\T1/pcr/m/n/10 displayLevel []\T1/ptm/m/n/10 
group-ing fac-tor. If equal to []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 ,
[3247]
[3248]
Underfull \hbox (badness 1132) in paragraph at lines 2127--2129
[]\T1/ptm/m/n/10 fitted model ob-jects, from which pre-dic-tions can be ex-trac
ted us-ing the
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[3250]
Underfull \hbox (badness 4168) in paragraph at lines 2238--2244
[][][]\T1/pcr/m/n/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corAR
MA[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 ,
[3251]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2263--2263
 []  \T1/pcr/m/n/9 gls(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
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Underfull \hbox (badness 10000) in paragraph at lines 2816--2820
[][][]\T1/pcr/m/n/10 corFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cor
Matrix.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 recalc.corStruct[
][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 6493) in paragraph at lines 3548--3556
[][][]\T1/pcr/m/n/10 corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corGau
s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corLin[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corSp
her[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T
1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 5116--5120
[][][]\T1/pcr/m/n/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/p
cr/m/n/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 5540--5543
[][][]\T1/pcr/m/n/10 getGroups.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 getGro
ups.gls[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 2799) in paragraph at lines 6044--6050
\T1/ptm/m/n/10 covariance ma-trix, ei-ther []\T1/pcr/m/n/10 "random.effects" []
\T1/ptm/m/n/10 for the random-effects
[3311]
Underfull \hbox (badness 7133) in paragraph at lines 6105--6109
[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3312]
Underfull \hbox (badness 2057) in paragraph at lines 6194--6205
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gl
sControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 glsObject[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gls[][][][]
\T1/ptm/m/n/10 ,
[3313]
Underfull \hbox (badness 10000) in paragraph at lines 6258--6260
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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Underfull \hbox (badness 7133) in paragraph at lines 6505--6509
[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3318]
Underfull \hbox (badness 10000) in paragraph at lines 6602--6608
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gn
lsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsObject[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 predict.gnls[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (54.78088pt too wide) in paragraph at lines 6629--6629
 []\T1/pcr/m/n/10 gnlsControl(maxIter = 50, nlsMaxIter = 7, msMaxIter = 50, min
Scale = 0.001, 
[3319]
Underfull \hbox (badness 10000) in paragraph at lines 6667--6669
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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Underfull \hbox (badness 10000) in paragraph at lines 6936--6943
[][][]\T1/pcr/m/n/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gappl
y[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gsummary[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nff
GroupedData[][][][]\T1/ptm/m/n/10 ,
[3324]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6954--6954
 []                \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxilla
ry fissure" ),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6959--6959
 []\T1/pcr/m/n/9 fm1 <- lme( Orth.new )   # fixed and groups formulae extracted
 from object[] 
Underfull \hbox (badness 2875) in paragraph at lines 6981--6983
[]\T1/ptm/m/n/10 an ob-ject to be sum-ma-rized - usu-ally a []\T1/pcr/m/n/10 gr
oupedData []\T1/ptm/m/n/10 ob-ject or a
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Underfull \hbox (badness 10000) in paragraph at lines 7196--7202
[][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr
/m/n/10 Initialize.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initi
alize.lmeStruct[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 1997) in paragraph at lines 7341--7349
[]\T1/ptm/m/n/10 an op-tional list with con-trol pa-ram-e-ters for the ini-tial
-iza-tion and op-ti-
Underfull \hbox (badness 2205) in paragraph at lines 7341--7349
\T1/ptm/m/n/10 miza-tion al-go-rithms used in []\T1/pcr/m/n/10 lme[]\T1/ptm/m/n
/10 . De-faults to []\T1/pcr/m/n/10 list(niterEM=20,
Underfull \hbox (badness 3118) in paragraph at lines 7364--7367
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initializ
e.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.varFunc[][][][]\T1/ptm/m/
n/10 ,
[3331]
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Underfull \hbox (badness 3354) in paragraph at lines 7574--7576
[]\T1/ptm/m/n/10 linear model co-ef-fi-cients, only present when []\T1/pcr/m/n/
10 which []\T1/ptm/m/n/10 is not equal to
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Underfull \hbox (badness 10000) in paragraph at lines 8101--8118
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lm
e.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme.groupedData[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 lmeObject[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 8101--8118
[][][]\T1/pcr/m/n/10 lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmL
ist[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 plot.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
predict.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qqnorm.lme[][][][]\T1/
ptm/m/n/10 ,
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Overfull \hbox (12.78088pt too wide) in paragraph at lines 8144--8144
 []    \T1/pcr/m/n/10 subset, method, na.action, control, contrasts, keep.data 
= TRUE)[] 
Underfull \hbox (badness 1642) in paragraph at lines 8153--8175
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
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Overfull \hbox (36.78088pt too wide) in paragraph at lines 8418--8418
 []\T1/pcr/m/n/10 lmeControl(maxIter = 50, msMaxIter = 50, tolerance = 1e-6, ni
terEM = 25, 
Underfull \hbox (badness 1189) in paragraph at lines 8443--8445
[]\T1/ptm/m/n/10 maximum num-ber of eval-u-a-tions of the ob-jec-tive func-tion
 per-mit-ted for
[3347]
Underfull \hbox (badness 10000) in paragraph at lines 8466--8468
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
Overfull \hbox (9.78043pt too wide) in paragraph at lines 8509--8509
 []\T1/pcr/m/n/9 # request that information on the evolution of the ms iteratio
ns be printed[] 
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Underfull \hbox (badness 10000) in paragraph at lines 9266--9273
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 gls[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.corStruct[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9277--9277
 []\T1/pcr/m/n/9 fm1 <- lme(distance ~ Sex * age, Orthodont, random = ~ age, me
thod = "ML") 
[3360]
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[3364]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  
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[]\T1/ptm/m/n/10 a ma-trix, or list of ma-tri-ces, with the same di-men-sions a
s
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[]\T1/ptm/m/n/10 a ma-trix with the new val-ues to be as-signed to the positive
-definite
Underfull \hbox (badness 2521) in paragraph at lines 9692--9695
\T1/ptm/m/n/10 ma-trix rep-re-sented by []\T1/pcr/m/n/10 object[]\T1/ptm/m/n/10
 . Must have the same di-men-sions as
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 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights, 
[3377]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10366--10366
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
Underfull \hbox (badness 1596) in paragraph at lines 10395--10421
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[3378]
[3379]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10549--10549
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
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[3381]
[3382]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 10700--10700
 []            \T1/pcr/m/n/10 opt = c("nlminb", "nlm"), natural = TRUE, sigma =
 NULL, ...)[] 
Underfull \hbox (badness 2213) in paragraph at lines 10711--10716
[]\T1/ptm/m/n/10 maximum num-ber of it-er-a-tions for [][][]\T1/pcr/m/n/10 nlmi
nb[][][] []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 iter.max[]\T1/ptm/m/n/10 ) or the [
][][]\T1/pcr/m/n/10 nlm[][][]
Underfull \hbox (badness 6961) in paragraph at lines 10733--10737
[]\T1/ptm/m/n/10 a log-i-cal value passed as the []\T1/pcr/m/n/10 trace []\T1/p
tm/m/n/10 to [][][]\T1/pcr/m/n/10 nlminb[][][](.., control=
[3383]
Underfull \hbox (badness 10000) in paragraph at lines 10752--10754
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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[3385]
[3386]
[3387]
Overfull \hbox (96.18033pt too wide) in paragraph at lines 11048--11048
 []\T1/pcr/m/n/9 cfm1 <- confint(fm1) # via profiling each % FIXME: only *one* 
message instead of one *each*[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 11049--11049
 []\T1/pcr/m/n/9 mat.class <- class(matrix(1)) # ("matrix", "array") for R >= 4
.0.0;  ("matrix" in older R)[] 
[3388]
[3389]
[3390]
[3391]
[3392]
[3393]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 11439--11439
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3394]
[3395]
[3396]
[3397]
[3398]
[3399]
Underfull \hbox (badness 6268) in paragraph at lines 11826--11836
[][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdMatrix[][][][]\T1/ptm/m/n/10 ,
[3400]
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[3403]
Underfull \hbox (badness 10000) in paragraph at lines 12087--12093
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 coef.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 pdConstruct[][][][]\T1/ptm/m/n/10 ,
[3404]
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[3406]
[3407]
[3408]
Underfull \hbox (badness 6876) in paragraph at lines 12409--12411
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 value []\T1/ptm/m/n/10 is an \T1/ptm/m/it/
10 ini-tial-ized []\T1/pcr/m/n/10 pdMat []\T1/ptm/m/n/10 ob-ject, []\T1/pcr/m/n
/10 object []\T1/ptm/m/n/10 will be con-structed from
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[3410]
Underfull \hbox (badness 2452) in paragraph at lines 12565--12572
[][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
pdNatural[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdSymm[][][][]\T1/ptm/m/
n/10 , [][][]\T1/pcr/m/n/10 reStruct[][][][]\T1/ptm/m/n/10 ,
[3411]
Underfull \hbox (badness 10000) in paragraph at lines 12631--12637
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pdMatrix.reStruct[][][][]\T1/ptm/m/n/10 ,
[3412]
[3413]
[3414]
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[3418]
[3419]
[3420]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 13220--13220
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3421]
[3422]
[3423]
[3424]
[3425]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13585--13585
 []\T1/pcr/m/n/9 plot(fm1, resid(., type = "pool") ~ fitted(.) | Sex, abline = 
0, id = 0.05)[] 
[3426]
Underfull \hbox (badness 10000) in paragraph at lines 13612--13615
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nffGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3427]
Underfull \hbox (badness 1838) in paragraph at lines 13655--13662
[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/pcr/m/
n/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/pcr/m/n/10 inner
Underfull \hbox (badness 3713) in paragraph at lines 13655--13662
[]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 innerGroups []\T1/ptm/m/n/10 are non-[]\T1
/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 , a leg-end for the dif-fer-ent []\T1/pcr/m/n/
10 inner
Overfull \hbox (12.78088pt too wide) in paragraph at lines 13712--13712
 []\T1/pcr/m/n/10 plot(x, outer, inner, innerGroups, xlab, ylab, strip, aspect,
 panel,[] 
[3428]
Underfull \hbox (badness 10000) in paragraph at lines 13719--13722
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nfnGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
Underfull \hbox (badness 2469) in paragraph at lines 13719--13722
[]\T1/pcr/m/n/10 groupedData []\T1/ptm/m/n/10 ob-ject with a nu-meric pri-mary 
co-vari-ate and a sin-gle
[3429]
Underfull \hbox (badness 10000) in paragraph at lines 13827--13830
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nmGrouped
Data[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3430]
[3431]
Underfull \hbox (badness 10000) in paragraph at lines 13921--13923
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 c
ollapse.groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nfnGroupe
dData[][][][]\T1/ptm/m/n/10 ,
[3432]
[3433]
[3434]
[3435]
[3436]
[3437]
[3438]
[3439]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 14445--14445
 []\T1/pcr/m/n/9 newOrth <- data.frame(Sex = c("Male","Male","Female","Female",
"Male","Male"),[] 
[3440]
[3441]
[3442]
[3443]
[3444]
[3445]
[3446]
[3447]
[3448]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef
fects}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15098 ...Extract Random Effects}{random.effects}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef
fects.1}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15098 ...Extract Random Effects}{random.effects}
                                                  
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[3453]
[3454]
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[3456]
[3457]
[3458]
[3459]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 15734--15734
 []\T1/pcr/m/n/9 plot(Remifentanil, type = "l", lwd = 2) # shows the 65 patient
s\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 remi profiles 
[3460]
Underfull \hbox (badness 1009) in paragraph at lines 15786--15795
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3461]
[3462]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 15933--15933
 []          \T1/pcr/m/n/10 type = c("response", "pearson", "normalized"), asLi
st = FALSE, ...)[] 
[3463]
[3464]
[3465]
[3466]
[3467]
Underfull \hbox (badness 10000) in paragraph at lines 16268--16274
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 l
me[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 solve.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 summary.reStruct[][][][]\T1/ptm/m/n/10 ,
[3468]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 16300--16300
 []         \T1/pcr/m/n/10 method = c("REML", "ML"), niterEM = c(40, 200), useG
en, ...)[] 
[3469]
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[3471]
[3472]
[3473]
[3474]
[3475]
Underfull \hbox (badness 1728) in paragraph at lines 16786--16789
[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
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[3477]
[3478]
[3479]
[3480]
Underfull \hbox (badness 1803) in paragraph at lines 17120--17129
\T1/pcr/m/n/10 of an Identity" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdIdent[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Positive-Definite,
Underfull \hbox (badness 10000) in paragraph at lines 17120--17129
\T1/pcr/m/n/10 Natural Parametrization" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 p
dNatural[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General
Underfull \hbox (badness 7888) in paragraph at lines 17120--17129
\T1/pcr/m/n/10 Positive-Definite" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdSymm[
]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 data.class(object)
[3481]
Underfull \hbox (badness 10000) in paragraph at lines 17191--17192
[]\T1/pcr/m/n/10 "Constant plus power of variance
Underfull \hbox (badness 10000) in paragraph at lines 17192--17193
[]\T1/pcr/m/n/10 "Constant plus proportion of variance
[3482]
[3483]
[3484]
[3485]
Underfull \hbox (badness 10000) in paragraph at lines 17441--17449
[][][]\T1/pcr/m/n/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varCo
nstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varConstProp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varIdent[][][][]\T1
/ptm/m/n/10 ,
[3486]
[3487]
[3488]
[3489]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 17713--17713
 []\T1/pcr/m/n/9 # Generate some synthetic data using the two-component error m
odel and use 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 17715--17715
 []\T1/pcr/m/n/9 # overparameterisation in the case of a constant term in the v
ariance function[] 
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[3491]
[3492]
[3493]
[3494]
[3495]
Underfull \hbox (badness 10000) in paragraph at lines 18153--18163
[][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rLin[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 18153--18163
[][][]\T1/pcr/m/n/10 Variogram.corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogr
am.corSpher[][][][]\T1/ptm/m/n/10 ,
[3496]
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3498]
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3499]
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[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 "[][]corR
atio[][][]"[]\T1/ptm/m/n/10 , rep-re-sent-ing an Ra-tio-nal
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3500]
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
Underfull \hbox (badness 10000) in paragraph at lines 18471--18480
[][][]\T1/pcr/m/n/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Va
riogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.default[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 18471--18480
[][][]\T1/pcr/m/n/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 Variogram.corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rRatio[][][][]\T1/ptm/m/n/10 ,
[3501]
Underfull \hbox (badness 3579) in paragraph at lines 18510--18515
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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[3503]
Underfull \hbox (badness 1009) in paragraph at lines 18656--18665
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3504]
[3505]
Underfull \hbox (badness 1009) in paragraph at lines 18788--18797
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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[3507]
[3508]
[3509]
[3510]
[3511]
[3512]
[3513]
[3514]) (./nnet-pkg.tex
Chapter 26.
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<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  
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l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  
[3515]
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 []         \T1/pcr/m/n/10 contrasts = NULL, Hess = FALSE, summ = 0, censored =
 FALSE,[] 
[3516]
[3517]
[3518]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 371--371
 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3519]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 428--428
 []\T1/pcr/m/n/9 targets <- matrix(c(rep(c(1,0,0),50), rep(c(0,1,0),50), rep(c(
0,0,1),50)),[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 431--431
 []\T1/pcr/m/n/9 ir1 <- nnet(ir[samp,], targets[samp,], size=2, rang=0.1, decay
=5e-4, maxit=200)[] 
[3520]
[3521]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 511--511
 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3522]) (./rpart-pkg.tex
Chapter 27.
[3523]
[3524]
[3525]
[3526]
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 []\T1/pcr/m/n/10 labels(object, digits = 4, minlength = 1L, pretty, collapse =
 TRUE, ...)[] 
[3527]
Underfull \hbox (badness 2351) in paragraph at lines 349--353
\T1/ptm/m/n/10 age: []\T1/pcr/m/n/10 pretty = 0 []\T1/ptm/m/n/10 im-plies []\T1
/pcr/m/n/10 minlength = 0L[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pretty = NULL []\
T1/ptm/m/n/10 im-plies
[3528]
[3529]
[3530]
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[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , the leaf nodes wil
l be at the hor-i-zon-tal plot co-or-di-nates of
[3531]
[3532]
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 []     \T1/pcr/m/n/10 filename = paste(deparse(substitute(tree)), ".ps", sep =
 ""),[] 
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[]\T1/ptm/m/n/10 Logical. If []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault),
 adds to the la-bel
Underfull \hbox (badness 1142) in paragraph at lines 771--775
\T1/pcr/m/n/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method [
]\T1/pcr/m/n/10 class[]\T1/ptm/m/n/10 , \T1/pcr/m/n/10 n
[3533]
[3534]
[3535]
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 []\T1/pcr/m/n/9 predict(fit, type = "matrix") # level number, class frequencie
s, probabilities[] 
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 []\T1/pcr/m/n/10 print(x, minlength = 0, spaces = 2, cp, digits = getOption("d
igits"),[] 
[3536]
[3537]
[3538]
[3539]
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 []\T1/pcr/m/n/10 rpart(formula, data, weights, subset, na.action = na.rpart, m
ethod, 
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 []      \T1/pcr/m/n/10 model = FALSE, x = FALSE, y = TRUE, parms, control, cos
t, ...)[] 
Underfull \hbox (badness 2846) in paragraph at lines 1243--1245
[]\T1/ptm/m/n/10 a list of op-tions that con-trol de-tails of the []\T1/pcr/m/n
/10 rpart []\T1/ptm/m/n/10 al-go-rithm. See
[3540]
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 []\T1/pcr/m/n/9 par(mfrow = c(1,2), xpd = NA) # otherwise on some devices the 
text is clipped[] 
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 []\T1/pcr/m/n/10 rpart.control(minsplit = 20, minbucket = round(minsplit/3), c
p = 0.01, 
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 []              \T1/pcr/m/n/10 maxcompete = 4, maxsurrogate = 5, usesurrogate 
= 2, xval = 10,[] 
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Underfull \hbox (badness 1565) in paragraph at lines 1760--1763
[]\T1/ptm/m/n/10 the ploidy sta-tus of the tu-mor, from flow cy-tom-e-try. Val-
ues are `[]\T1/pcr/m/n/10 diploid[]\T1/ptm/m/n/10 ',
[3548]
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 []     \T1/pcr/m/n/10 pretty = NULL, digits = getOption("digits") - 3, use.n =
 FALSE,[] 
[3549]
[3550]
[3551]) (./spatial-pkg.tex
[3552]
Chapter 28.
[3553]
[3554]
[3555]
[3556]
[3557]
[3558]
Underfull \hbox (badness 10000) in paragraph at lines 423--427
[3559]
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[3567]
[3568]
[3569]
[3570]
[3571]) (./survival-pkg.tex
[3572]
Chapter 29.
[3573]
[3574]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 173--173
 []\T1/pcr/m/n/9 aareg(formula = Surv(time, status) ~ age + sex + ph.ecog, data
 = lung, nmin = 1[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 192--192
 []\T1/pcr/m/n/9 ## Not run: lines(lfit2[4], col=2)  # Nearly the same, until t
he last point[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 195--195
 []\T1/pcr/m/n/9 # Chronic Granuomatous Disease.  See section 8.5 of Therneau a
nd Grambsch.[] 
[3575]
[3576]
Underfull \hbox (badness 6412) in paragraph at lines 284--286
[]\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as 
long as
[3577]
[3578]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml.1}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                  
[3579]
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 []\T1/pcr/m/n/9 fit <- coxph(Surv(futime, fustat) ~ resid.ds *rx + ecog.ps, da
ta = ovarian) 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 487--487
 []\T1/pcr/m/n/9 fit2 <- coxph(Surv(futime, fustat) ~ resid.ds +rx + ecog.ps, d
ata=ovarian)[] 
[3580]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 525--525
 []    \T1/pcr/m/n/10 survreg(Surv(time, status) ~ age + sex + factor(ph.ecog),
 lung)[] 
[3581]
Underfull \hbox (badness 1178) in paragraph at lines 605--615
[]\T1/ptm/m/n/10 If H(t; z) is the pre-dicted cu-mu-la-tive haz-ard for an ob-s
er-va-tion with co-vari-ate vec-tor z,
[3582]
[3583]
[3584]
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 []\T1/pcr/m/n/9 py <- pseudo(survfit(Surv(time, status) ~1, lung), time=730) #
2 year survival 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 808--808
 []\T1/pcr/m/n/10 brier(fit, times, newdata, ties = TRUE, detail = FALSE, timef
ix = TRUE, 
[3585]
[3586]
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 []    \T1/pcr/m/n/10 method =c("Prentice","SelfPrentice","LinYing","I.Borgan",
"II.Borgan"),[] 
[3587]
[3588]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1034--1034
 []   \T1/pcr/m/n/9 subcoh = ~subcohort, id=~seqno, stratum=~instit, cohort.siz
e=stratsizes,[] 
[3589]
[3590]
Underfull \hbox (badness 1097) in paragraph at lines 1205--1207
[]\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi
al and negative-binomial data.
[3591]
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 []\T1/pcr/m/n/9 ppois(4, 10.24153)     #chance of seeing 4 or fewer events wit
h large rate[] 
[3592]
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 []\T1/pcr/m/n/9 ## Not run: clogit(case ~ spontaneous + induced + strata(strat
um), data=infert) 
[3593]
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 []\T1/pcr/m/n/9 marginal.model <- coxph(Surv(time, status) ~ rx, data= rats, c
luster=litter, 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1407 ...erapy for Stage B/C colon cancer}{colon}
                                                  
[3594]
[3595]
Overfull \hbox (72.78088pt too wide) in paragraph at lines 1507--1507
 []  \T1/pcr/m/n/10 influence=0, ranks = FALSE, reverse=FALSE, timefix=TRUE, ke
epstrata=10, ...)[] 
[3596]
[3597]
[3598]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1733--1733
 []\T1/pcr/m/n/9 options(na.action = na.exclude)   # predict all 1384 obs, incl
uding missing[] 
[3599]
[3600]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1827--1827
 []\T1/pcr/m/n/10 cox.zph(fit, transform="km", terms=TRUE, singledf=FALSE, glob
al=TRUE) 
[3601]
[3602]
[3603]
[3604]
Underfull \hbox (badness 10000) in paragraph at lines 2145--2150
[]\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f
ol-low the ad-vice of
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\T1/ptm/m/n/10 some cod-ing guides and prepend []\T1/pcr/m/n/10 survival:: []\T
1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the spe-
Underfull \hbox (badness 10000) in paragraph at lines 2145--2150
\T1/ptm/m/n/10 cial terms, e.g., []\T1/pcr/m/n/10 survival::coxph(survival:Surv
(time, status) ~ age +
[3605]
Underfull \hbox (badness 3861) in paragraph at lines 2257--2261
[][][]\T1/pcr/m/n/10 coxph.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
coxphms.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxph.control[][][]
[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cluster[][][][]\T1/ptm/m/n/10 , [][][]\
T1/pcr/m/n/10 strata[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Surv[][][][]\
T1/ptm/m/n/10 ,
[3606]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2312--2312
 []\T1/pcr/m/n/10 iter.max = 20, toler.inf = sqrt(eps), outer.max = 10, timefix
=TRUE)[] 
[3607]
[3608]
[3609]
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[3612]
[3613]
[3614]
[3615]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2942--2942
 [] \T1/pcr/m/n/9 [1] "extreme"     "logistic"    "gaussian"    "weibull"     "
exponential"[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2983--2983
 []\T1/pcr/m/n/10 finegray(formula, data, weights, subset, na.action= na.pass, 
etype, 
[3616]
[3617]
[3618]
[3619]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3227--3227
 []\T1/pcr/m/n/10 frailty.t(x, sparse = (nclass > 5), theta, df, eps = 1e-05, t
df = 5,[] 
[3620]
[3621]
[3622]
[3623]
Underfull \hbox (badness 1019) in paragraph at lines 3489--3491
[]\T1/ptm/m/n/10 outcome: []\T1/pcr/m/n/10 censor[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 thymic lymphoma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 reticulum cell sarcoma
 other
[3624]
[3625]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3634--3634
 []\T1/pcr/m/n/9 kfit <- coxph(Surv(time, status)~ age + sex + disease + frailt
y(id), kidney) 
[3626]
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 []           \T1/pcr/m/n/9 factor(c(0, 1, 2,1,0,2), 0:2, c("censored", "progre
ssion", "death")))[] 
Underfull \hbox (badness 1389) in paragraph at lines 3683--3685
[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3694--3694
 []        \T1/pcr/m/n/10 conf.type = c("log", "log-log", "plain", "logit", "ar
csin"),[] 
[3627]
[3628]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3835--3835
 []                 \T1/pcr/m/n/9 rmap=list(sex=sex, age=age*365.35, year=as.Da
te(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 1979/01/01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3629]
[3630]
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 [] [] 
[3631]
[3632]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4098--4098
 []\T1/pcr/m/n/9 # surprise) but their rates of conversion to PCM are essential
ly the same.[] 
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[3634]
[3635]
[3636]
[3637]
[3638]
[3639]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4549--4549
 []                    \T1/pcr/m/n/9 entry.dt = as.Date(paste("2011", 1:10, "5"
, sep=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 -\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3640]
[3641]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4699--4699
 []\T1/pcr/m/n/9 tdata <- data.frame(x= lung$age, y = 10*log(lung$age-35) + rno
rm(228, 0, 2))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4704--4704
 []\T1/pcr/m/n/9 knots <- unlist(attributes(fit1$model[[2]])[c(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 Boundary.knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , \TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )])[] 
[3642]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4708--4708
 []\T1/pcr/m/n/9 unname(coef(fit1)[-1] - coef(fit1)[1])  # differences: yhat[2:
4] - yhat[1][] 
[3643]
[3644]
[3645] [3646]
[3647]
[3648]
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 [] \T1/pcr/m/n/10 pch=3, col=1, lty=1, lwd=1, cex=1, log=FALSE, xscale=1, ysca
le=1,[] 
[3649]
[3650]
[3651]
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 []\T1/pcr/m/n/10 se.fit=FALSE, na.action=na.pass, terms=names(object$assign), 
collapse,[] 
[3652]
[3653]
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 []\T1/pcr/m/n/9 mresid <- (lung$status-1) - predict(fit, type=\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 expected\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ) #Martingale resid[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 5530--5530
 []  \T1/pcr/m/n/9 predict(fit, reference="sample") + sum(coef(fit) * fit$means
, na.rm=TRUE)[] 
[3654]
[3655]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5616--5616
 []\T1/pcr/m/n/9 pct <- 1:98/100   # The 100th percentile of predicted survival
 is at +infinity[] 
[3656]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 5694--5694
 []  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars"), expand=FALSE
, ...)[] 
[3657]
Underfull \hbox (badness 1852) in paragraph at lines 5766--5768
[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.survfit"[]\T1/pt
m/m/n/10 , which is the re-sult of the
[3658]
[3659]
[3660]
[3661]
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 []\T1/pcr/m/n/9 rhat <- predict(rfit, newdata=expand.grid(ph.ecog=0:3, sex=1:2
), se.fit=TRUE)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6032--6032
 []\T1/pcr/m/n/9 # the estimate for ph.ecog=3 is very unstable (n=1), pseudoval
ues smooth it.[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6034--6034
 []\T1/pcr/m/n/9 # In all the above we should be using the robust variance, e.g
., svyglm, but[] 
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 []\T1/pcr/m/n/10 pspline(x, df=4, theta, nterm=2.5 * df, degree=3, eps=0.1, me
thod, 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 6059--6059
 []   \T1/pcr/m/n/10 Boundary.knots=range(x), intercept=FALSE, penalty=TRUE, co
mbine, ...)[] 
[3662]
[3663]
[3664]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 6222--6222
 []  \T1/pcr/m/n/10 py <- pyears(futime ~ rx, rmap=list(age=age, sex=sex, year=
entry.dt),[] 
[3665]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6324--6324
 []\T1/pcr/m/n/9 pfit <- pyears(Surv(ptime/365.25, pstat) ~ temp.yr + temp.age 
+ sex,  mgus,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6345--6345
 []\T1/pcr/m/n/9 fit1 <- pyears(Surv(stop/365.25, event) ~ cut(age + 48, c(0,50
,60,70,100)) +[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6347--6347
 []\T1/pcr/m/n/9 fit2 <- pyears(Surv(stop/365.25, event) ~ tcut(age + 48, c(0,5
0,60,70,100)) +[] 
[3666]
[3667]
[3668]
[3669]
[3670]
[3671]
[3672]
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 []\T1/pcr/m/n/9 gfit <- survfit(Surv(day1, day2, status) ~ batch, braking, id=
 locomotive)[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 6803--6803
 []     \T1/pcr/m/n/9 xlab="Locomotive Age in Months", ylab="Mean cumulative nu
mber replacements")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6806--6806
 []\T1/pcr/m/n/9 #  natural target, an estimate of the number of replacements b
y a given time[] 
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 []\T1/pcr/m/n/9 # When two valve seats failed at the same inspection, we need 
to jitter one[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6810--6810
 []\T1/pcr/m/n/9 ties <- which(with(valveSeat, diff(id)==0 & diff(time)==0))  #
first of a tie[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6814--6814
 []\T1/pcr/m/n/9 vdata$time1 <- ifelse(!duplicated(vdata$id), 0, c(0, temp[-len
gth(temp)]))[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 6841--6841
 []       \T1/pcr/m/n/10 collapse=FALSE, weighted= (type %in% c("dfbeta", "dfbe
tas")), ...)[] 
[3673]
[3674]
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 []    \T1/pcr/m/n/10 type="pstate", collapse=FALSE, weighted= collapse, data.f
rame=FALSE,[] 
[3675]
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 []\T1/pcr/m/n/10 residuals(object, type=c("response", "deviance","dfbeta","dfb
etas",[] 
Underfull \hbox (badness 1043) in paragraph at lines 7046--7049
[]\T1/pcr/m/n/10 "dfbetas"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "working"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "ldcase"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lsresp
"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ldshape"[]\T1/ptm/m/n/10 , and
[3676]
[3677]
[3678]
[3679]
[3680]
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 []\T1/pcr/m/n/9 lfit1 <- survreg(Surv(time, status) ~ age + ridge(ph.ecog, the
ta=5), lung)[] 
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 []\T1/pcr/m/n/9 lfit2 <- survreg(Surv(time, status) ~ sex + ridge(age, ph.ecog
, theta=1), lung)[] 
[3681]
[3682]
[3683]
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 []\T1/pcr/m/n/10 rttright(formula, data, weights, subset, na.action, times, id
, timefix = TRUE, 
[3684]
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 []\T1/pcr/m/n/9 cdf <- cdf[!duplicated(aml$time[index], fromLast=TRUE)]  # rem
ove duplicate times[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7631--7631
 []\T1/pcr/m/n/9 wt2 <- rttright(Surv(dtime, death) ~ hormon, rotterdam, times=
 365*c(3, 5))[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7635 ...ata from a soldering experiment}{solder}
                                                  
[3685]
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 []\T1/pcr/m/n/9 dummy <- expand.grid(Opening= c("S", "M", "L"), Solder=c("Thin
", "Thick"))[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 7692--7692
 []            \T1/pcr/m/n/9 dimnames=list(Opening= c("S", "M", "L"), Solder=c(
"Thin", "Thick")))[] 
[3686]
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 []\T1/pcr/m/n/10 statefig(layout, connect, margin = 0.03, box = TRUE, cex = 1,
 col = 1, 
[3687]
[3688]
[3689]
[3690]
[3691]
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 []\T1/pcr/m/n/10 event = TRUE, pyears = TRUE, expected = TRUE, rate = FALSE, r
r =expected,[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 8119--8119
 []\T1/pcr/m/n/10 ci.r = FALSE, ci.rr = FALSE, totals=FALSE, legend = TRUE, vli
ne = FALSE,[] 
[3692]
[3693]
[3694]
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 []  \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, dosum, ...
)[] 
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 []  \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, ...)[] 
[3695]
[3696]
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 []    \T1/pcr/m/n/10 type=c(\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 right\TS1/pcr/m/n/
10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 left\TS1/pcr/m/n/10 '\T1/p
cr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval\TS1/pcr/m/n/10 '\T1/pcr/m/
n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 counting\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 
, \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval2\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \T
S1/pcr/m/n/10 '\T1/pcr/m/n/10 mstate\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ),[] 
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 median[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10
 quantile []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 meth-ods 
first con-struct a sur-vival curve us-ing
[3700]
[3701]
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 []\T1/pcr/m/n/10 survcheck(formula, data, subset, na.action, id, istate, istat
e0="(s0)", 
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[3703]
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 []\T1/pcr/m/n/10 survcondense(formula, data, subset, weights, na.action= na.pa
ss, id, 
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[3705]
[3706]
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 []\T1/pcr/m/n/9 check <- coxph(Surv(time, status) ~ factor(pat.karno) + strata
(inst), lung)[] 
[3707]
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 []                  \T1/pcr/m/n/9 rmap= list(age=(accept.dt - birth.dt), sex=1
, year=accept.dt),[] 
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 []        \T1/pcr/m/n/10 method=c("ederer", "hakulinen", "conditional", "indiv
idual.h",[] 
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[]\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre
-dicted sur-vival
[3708]
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 []                      \T1/pcr/m/n/10 rmap = list(year=entry.dt, age=(birth.d
t-entry.dt)),[] 
[3709]
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 []\T1/pcr/m/n/9 summary(fit1, times=1:10*182.5, scale=365) #expected survival 
by 1/2 years[] 
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[3711]
[3712]
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[][][]\T1/pcr/m/n/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 survfit.object[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.survfit[][][][]\T1/ptm/m/n/10 
,
[3713]
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 []        \T1/pcr/m/n/10 se.fit=TRUE, conf.int=.95, individual=FALSE, stype=2,
 ctype,[] 
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 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
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 []        \T1/pcr/m/n/10 se.fit=FALSE, conf.int=.95, individual=FALSE, stype=2
, ctype,[] 
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 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
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[3715]
[3716]
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 []        \T1/pcr/m/n/10 stype=1, ctype=1, id, cluster, robust, istate, timefi
x=TRUE,[] 
[3717]
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[]\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio
n at the
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\T1/pcr/m/n/10 ctype=1[]\T1/ptm/m/n/10 , "fleming-harrington" which is equiv-a-
lent to []\T1/pcr/m/n/10 stype=2,
[3719]
[3720]
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 []\T1/pcr/m/n/9 #  There are no interval censored subjects, only left-censored
 (status=3),[] 
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[3723]
[3724]
[3725]
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 []\T1/pcr/m/n/10 survfitcoxph.fit(y, x, wt, x2, risk, newrisk, strata, se.fit,
 survtype, 
[3726]
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[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
[3727]
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 []\T1/pcr/m/n/10 survConcordance(formula, data, weights, subset, na.action) # 
use concordance 
[3728]
[3729]
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\T1/ptm/m/n/10 it is as-sumed to name an el-e-ment from [][][]\T1/pcr/m/n/10 su
rvreg.distributions[][][][]\T1/ptm/m/n/10 .
Underfull \hbox (badness 10000) in paragraph at lines 10925--10932
\T1/ptm/m/n/10 These in-clude []\T1/pcr/m/n/10 "weibull"[]\T1/ptm/m/n/10 , []\T
1/pcr/m/n/10 "exponential"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "gaussian"[]\T1/p
tm/m/n/10 ,
Underfull \hbox (badness 1297) in paragraph at lines 10925--10932
[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 ,[]\T1/pcr/m/n/10 "lognormal" []\T1
/ptm/m/n/10 and []\T1/pcr/m/n/10 "loglogistic"[]\T1/ptm/m/n/10 . Oth-er-wise, i
t is
[3730]
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 []\T1/pcr/m/n/9 # There are multiple ways to parameterize a Weibull distributi
on. The survreg[] 
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[3732]
[3733]
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 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3734]
[3735]
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 []                            \T1/pcr/m/n/9 temp/pi, -2 *x*temp, 2*temp^2*(4*x
^2*temp -1))[] 
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 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3736]
[3737]
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 []\T1/pcr/m/n/9 pfit2 <- pyears(Surv(years, death) ~ fgrp + agegrp, scale =100
0, data=test)[] 
[3738]
[3739]
[3740]
[3741]
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 []\T1/pcr/m/n/9 # The first data set contains data on 312 subjects in a clinic
al trial plus[] 
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 []\T1/pcr/m/n/9 # 106 that agreed to be followed off protocol, the second data
 set has data[] 
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 []               \T1/pcr/m/n/9 protime = tdc(day, protime), alk.phos = tdc(day
, alk.phos))[] 
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 []\T1/pcr/m/n/9 fit <- coxph(Surv(tstart, tstop, endpt==2) ~ protime + log(bil
i), data=pbc2)[] 
[3742]
[3743]
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[3746]
[3747]
[3748]
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 []\T1/pcr/m/n/10 levels, test = c("global", "trend", "pairwise"), predict = "l
inear",[] 
[3749]
[3750]
[3751])
[3752] (./fullrefman.ind
[3753]
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[]| \T1/pcr/m/n/10 smooth.construct.ad.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.bs.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.cr.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.ds.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.fs.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.gp.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.sos.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.t2.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.tp.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.ad.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.cr.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.ds.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.fs.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.gp.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.ps.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.re.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.so.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.sos.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.sz.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.t2.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.tp.smooth.spec\T1/ptm/m/n/10 , 
[3787]
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[]| \T1/pcr/m/n/10 smooth.construct.so.smooth.spec\T1/ptm/m/n/10 , 
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[]\T1/pcr/m/n/10 [,Matrix,index,index,logical-method 
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[]\T1/pcr/m/n/10 [,Matrix,index,index,missing-method 
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[]\T1/pcr/m/n/10 coerce,CHMsimpl,dtCMatrix-method 
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[]\T1/pcr/m/n/10 coerce,CHMsuper,dgCMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Cholesky,dtrMatrix-method 
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[]\T1/pcr/m/n/10 coerce,copMatrix,corMatrix-method 
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[]\T1/pcr/m/n/10 coerce,corMatrix,copMatrix-method 
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[]\T1/pcr/m/n/10 coerce,dgCMatrix,matrix.csc-method 
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[]\T1/pcr/m/n/10 coerce,dgRMatrix,matrix.csr-method 
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[]\T1/pcr/m/n/10 coerce,dgTMatrix,matrix.coo-method 
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[]\T1/pcr/m/n/10 coerce,diagonalMatrix,symmetricMatrix-method 
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[]\T1/pcr/m/n/10 coerce,dpoMatrix,corMatrix-method 
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[3819]
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[]\T1/pcr/m/n/10 coerce,dsyMatrix,corMatrix-method 
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[]\T1/pcr/m/n/10 coerce,factor,sparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,generalMatrix,packedMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,ddenseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,dsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,generalMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,ldenseMatrix-method 
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[3820]
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[3821]
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[3822]
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[]\T1/pcr/m/n/10 coerce,vector,unpackedMatrix-method 
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[]\T1/pcr/m/n/10 Compare,CsparseMatrix,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 Compare,lgeMatrix,lgeMatrix-method 
[3823]
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[3824]
[3825]
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[3826]
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[2] (./base-pkg.tex
Chapter 1.
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[]\T1/ptm/m/n/10 the small-est pos-i-tive floating-point num-ber []\T1/pcr/m/n/
10 x []\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 + x != 1[]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 It equals []\T1/pcr/m/n/10 double.base ^ ulp.digits []\T1/ptm/m/
n/10 if ei-ther []\T1/pcr/m/n/10 double.base []\T1/ptm/m/n/10 is
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\T1/ptm/m/n/10 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0; oth
-er-wise, it is []\T1/pcr/m/n/10 (double.base ^
Underfull \hbox (badness 4454) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/pcr/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It
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\T1/ptm/m/n/10 equals []\T1/pcr/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/pcr/m/n/10 double.base
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[]\T1/ptm/m/n/10 is 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/pcr/m/n/10 (double.base
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\T1/pcr/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/p
cr/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
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[]\T1/ptm/m/n/10 the num-ber of \T1/ptm/m/it/10 bytes \T1/ptm/m/n/10 in the C [
]\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 type: a 64-bit []\T1/pcr/m/n/10 time_t 
[]\T1/ptm/m/n/10 (value
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[]\T1/pcr/m/n/10 8[]\T1/ptm/m/n/10 ) is much pre-ferred these days. Note that t
his is the type used by
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[]\T1/ptm/m/n/10 introduced in \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.0.0. When [][]
[]\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 is
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[]\T1/pcr/m/n/10 *.exponent[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 *.min.exp[]\T1/p
tm/m/n/10 , and []\T1/pcr/m/n/10 *.max.exp[]\T1/ptm/m/n/10 , com-puted en-tirel
y anal-o-gously to their
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[]\T1/ptm/m/n/10 Note that it is le-gal for a plat-form to have a `[]\T1/pcr/m/
n/10 long double[]\T1/ptm/m/n/10 ' C type which is
Underfull \hbox (badness 6691) in paragraph at lines 255--260
\T1/ptm/m/n/10 iden-ti-cal to the `[]\T1/pcr/m/n/10 double[]\T1/ptm/m/n/10 ' ty
pe --- this hap-pens on ARM CPUs. In that case
Underfull \hbox (badness 1521) in paragraph at lines 255--260
[][][]\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 will be
 false but on ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 prior to 4.0.4,
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[][][]\T1/pcr/m/n/10 R.version[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 
Sys.info[][][] []\T1/ptm/m/n/10 give more de-tails about the OS. In par-tic-u-l
ar,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, v
alue = TRUE)[] 
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 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, i
gnore.case = TRUE)[] 
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 []          \T1/pcr/m/n/10 ..., check.attributes = TRUE, check.class = TRUE, g
iveErr = FALSE)[] 
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 []\T1/pcr/m/n/9 all.equal(tan(d45), one, tolerance = 0, scale = 1+(-2:2)/1e9) 
# "absolute"[] 
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 []\T1/pcr/m/n/9 mtext(paste("mean(all.equal(x1, x2*(1 + eps_k))) {100 x} Mean 
rel.diff.=",[] 
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 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE)# "target is 
bar, current is numeric"[] 
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 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE, check.class 
= FALSE) # TRUE[] 
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 []\T1/pcr/m/n/10 all.names(expr, functions = TRUE, max.names = -1L, unique = F
ALSE) 
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Underfull \hbox (badness 1221) in paragraph at lines 1535--1541
[]\T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion, where \T1/phv/m/n/10 R \T1/p
tm/m/n/10 uses ``floored'' in-te-ger di-vi-sion, i.e., []\T1/pcr/m/n/10 q <- x 
%/% y :=
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Underfull \hbox (badness 10000) in paragraph at lines 1623--1631
\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle
 . com / cd / E19957-[]01 / 806-[]3568 / ncg _
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 []              \T1/pcr/m/n/10 cut.names = FALSE, col.names = names(x), fix.em
pty.names = TRUE,[] 
Underfull \hbox (badness 1303) in paragraph at lines 1997--2000
[]\T1/ptm/m/n/10 logical or in-te-ger; in-di-cat-ing if col-umn names with more
 than 256 (or
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 []\T1/pcr/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[]\T1/ptm/m/n/10 If [][][]\T1/pcr/m/n/10 is.object[][][](x) []\T1/ptm/m/n/10 is
 true and it has a [][][]\T1/pcr/m/n/10 class[][][] []\T1/ptm/m/n/10 for which 
an
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 []\T1/pcr/m/n/9 (now <- as.POSIXlt(Sys.time())) # the current datetime, as cla
ss "POSIXlt"[] 
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[]\T1/ptm/m/n/10 There are no re-stric-tions on the name given as []\T1/pcr/m/n
/10 x[]\T1/ptm/m/n/10 : it can be a non-syntactic name (see
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 []\T1/pcr/m/n/10 attach(what, pos = 2L, name = deparse1(substitute(what), back
tick=FALSE), 
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[]\T1/pcr/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/pcr/m/n/10 balancePOSIXlt(x,
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 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", nus), col = nus + 2, 
lwd = 1, bty="n")[] 
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 []\T1/pcr/m/n/9 plot(range(x0), c(1e-40, 1), log = "xy", xlab = "x", ylab = ""
, type = "n",[] 
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 []     \T1/pcr/m/n/9 main = "Bessel Functions  J_nu(x)  near 0\n log - log  sc
ale") ; axis(2, at=1)[] 
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 []\T1/pcr/m/n/9 plot(range(x0), 10^c(-100, 80), log = "xy", xlab = "x", ylab =
 "", type = "n",[] 
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 []     \T1/pcr/m/n/9 main = "Bessel Functions  K_nu(x)  near 0\n log - log  sc
ale") ; axis(2, at=1)[] 
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 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", paste(nus, nus + 0.5,
 sep = ", ")),[] 
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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 []\T1/pcr/m/n/9 L <- as.list(E <- setNames( , c("if", "for", "while", "repeat"
, "function",[] 
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 []                                  \T1/pcr/m/n/9 "(", "{", "[",  "<-", "<<-",
 "->", "=")))[] 
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 []\T1/pcr/m/n/9 for(i in seq_along(L)) L[[i]] <- call(E[[i]]) # instead of lap
ply(E, call) ..[] 
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 []\T1/pcr/m/n/9 list_ <- function (...) \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 names<-
\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 (list(...), vapply(sys.call()[-1L], as.character
, ""))[] 
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 []\T1/pcr/m/n/9 (Tab <- noquote(sapply(list_(is.call, typeof, class, mode), \(
F) sapply(L, F))))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the name of a C func-tion, or an 
ob-ject
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\T1/ptm/m/n/10 of class []\T1/pcr/m/n/10 "[][]NativeSymbolInfo[][][]"[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 "[][]RegisteredNativeSymbol[][][]" []\T1/ptm/m/n/10 o
r
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 []             \T1/pcr/m/n/10 Xchk = any(nas %in% c("X11", "jpeg", "png", "tif
f")))[] 
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[]\T1/ptm/m/n/10 is ICU avail-able for col-la-tion? See the help on [][]Com-par
-i-son[][][] and
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 []\T1/pcr/m/n/9 cat(paste(letters, 100* 1:26), fill = TRUE, labels = paste0("{
", 1:10, "}:"))[] 
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[]\T1/ptm/m/n/10 (generalized) vec-tors or ma-tri-ces. These can be given as na
med ar-gu-
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[]\T1/ptm/m/n/10 (only for data frame method:) log-i-cal in-di-cat-ing if uniqu
e and valid
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 []\T1/pcr/m/n/9 rbind(1:4, c = 2, "a++" = 10, dd, deparse.level = 1) # 3 rowna
mes (default)[] 
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 []\T1/pcr/m/n/9 as.character(list(A = "Abc", xy = c("x", "y"))) # "Abc"  "c(\"
x\", \"y\")"[] 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[]\T1/ptm/m/n/10 When a generic func-tion []\T1/pcr/m/n/10 fun []\T1/ptm/m/n/10
 is ap-plied to an ob-ject with class at-tribute []\T1/pcr/m/n/10 c("first",
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[]\T1/ptm/m/n/10 Collation of char-ac-ter strings is a com-plex topic. For an i
n-tro-duc-tion see [][]$\T1/pcr/m/n/10 https : / /
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 []\T1/pcr/m/n/9 stopifnot(identical(as.complex(NA_real_), NA_real_ + 0i)) # ha
s always been true[] 
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 []\T1/pcr/m/n/9 NAs <- vapply(list(NA, NA_integer_, NA_real_, NA_character_, N
A_complex_),[] 
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 []\T1/pcr/m/n/9 ## The exact result of this *depends* on the platform, compile
r, math-library:[] 
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 []\T1/pcr/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
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[]\T1/ptm/m/n/10 User in-ter-rupts sig-nal a con-di-tion of class []\T1/pcr/m/n
/10 interrupt []\T1/ptm/m/n/10 that in-her-its di-rectly from class
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[]\T1/ptm/m/n/10 Restarts are used for es-tab-lish-ing re-cov-ery pro-to-cols. 
They can be es-tab-lished us-ing
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[]\T1/ptm/m/n/10 One ad-di-tional field that can be spec-i-fied for a restart i
s []\T1/pcr/m/n/10 interactive[]\T1/ptm/m/n/10 . This should
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 []\T1/pcr/m/n/10 unz(description, filename, open = "", encoding = getOption("e
ncoding"))[] 
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[]\T1/ptm/m/n/10 character string, par-tially matched to []\T1/pcr/m/n/10 c("de
fault", "internal",
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[]\T1/pcr/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 unz[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 socketConnection[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 It may be pos-si-ble to de-duce the cur-rent na-tive en-cod-in
g from
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[]\T1/pcr/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/pcr/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/pcr/m/n/10 "r" []\T1/ptm/m/n
/10 only. This
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\T1/ptm/m/n/10 reads the X11 pri-mary se-lec-tion (see [][]$\T1/pcr/m/n/10 http
s : / / specifications . freedesktop .
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[]\T1/pcr/m/n/10 "X11_primary" []\T1/ptm/m/n/10 and the sec-ondary se-lec-tion 
as []\T1/pcr/m/n/10 "X11_secondary"[]\T1/ptm/m/n/10 . On most sys-
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 []\T1/pcr/m/n/9 A <- read.table(con <- file("students", encoding = "UCS-2LE"))
; close(con)[] 
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[]\T1/ptm/m/n/10 The cur-rent eval-u-a-tion depth (in-clud-ing two calls for th
e call to
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 []\T1/pcr/m/n/9 curlGetHeaders("http://bugs.r-project.org")   ## this redirect
s to https://[] 
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 []\T1/pcr/m/n/9 tm <- seq(as.POSIXct("2012-06-01 06:00"), by = "6 hours", leng
th.out = 24)[] 
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[]\T1/pcr/m/n/10 data.frame []\T1/ptm/m/n/10 con-verts each of its ar-gu-ments 
to a data frame by call-ing
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[][][]\T1/pcr/m/n/10 as.data.frame[][][](optional = TRUE)[]\T1/ptm/m/n/10 . As 
that is a generic func-tion, meth-ods can be
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 []                 \T1/pcr/m/n/9 c = seq(as.Date("2004-01-01"), by = "week", l
ength.out = 3),[] 
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\T1/pcr/m/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") []\T1/ptm/m
/n/10 may give []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 , and
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Underfull \hbox (badness 10000) in paragraph at lines 9900--9904
[]\T1/pcr/m/n/10 .Defunct []\T1/ptm/m/n/10 is called from de-funct func-tions. 
Func-tions should be listed in
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 []\T1/pcr/m/n/9 ### Promises in an environment [for advanced users]:  --------
-------------[] 
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 []\T1/pcr/m/n/9 e <- (function(x, y = 1, z) environment())(cos, "y", {cat(" HO
!\n"); pi+2})[] 
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 []        \T1/pcr/m/n/10 backtick = mode(expr) %in% c("call", "expression", "(
", "function"),[] 
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 []        \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "sh
owAttributes"),[] 
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[]\T1/pcr/m/n/10 ..deparseOpts []\T1/ptm/m/n/10 is the [][][]\T1/pcr/m/n/10 cha
racter[][][] []\T1/ptm/m/n/10 vec-tor of pos-si-ble de-pars-ing op-tions used b
y
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[]\T1/ptm/m/n/10 Surround un-eval-u-ated ex-pres-sions, but not [][][]\T1/pcr/m
/n/10 formula[][][][]\T1/ptm/m/n/10 s, with
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[]\T1/ptm/m/n/10 a nu-meric value. The mod-u-lus (ab-so-lute value) of the de-t
er-mi-nant if
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 []    \T1/pcr/m/n/10 z <- as.POSIXct(c("2016-12-31 23:59:59", "2017-01-01 00:0
0:01"))[] 
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[]\T1/pcr/m/n/10 provideDimnames(x) []\T1/ptm/m/n/10 pro-vides []\T1/pcr/m/n/10
 dimnames []\T1/ptm/m/n/10 where ``miss-ing'', such that its re-sult has
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 []\T1/pcr/m/n/9 strd(provideDimnames(N, base= list(letters[-(1:9)], tail(LETTE
RS)))) # recycling[] 
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 []\T1/pcr/m/n/9 strd(provideDimnames(A, base= list(c("AA","BB")))) # recycling
 on both levels[] 
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[]\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of []\
T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . Cur-rently this is only used by
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 []\T1/pcr/m/n/9 ## From R 4.1.0 to 4.1.2, ...names() sometimes did not match n
ames(list(...));[] 
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 []\T1/pcr/m/n/9 chk.n2 <- function(...) stopifnot(identical(print(...names()),
 names(list(...))))[] 
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Underfull \hbox (badness 2828) in paragraph at lines 11410--11415
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ 754-[]19
85$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
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\T1/pcr/m/n/10 org / wiki / IEEE _ 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr
/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _
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\T1/pcr/m/n/10 754-[]2019$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
pcr/m/n/10 https :
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 []     \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "showA
ttributes"))[] 
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 []\T1/pcr/m/n/9 ## Write an ASCII version of the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 base\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 function mean() to our temp file, ..[] 
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 []\T1/pcr/m/n/9 drop(1:3 %*% 2:4)  # scalar product - w/o drop(.), would retur
n 1x1 matrix[] 
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 []\T1/pcr/m/n/9 aq <- transform(airquality, Month = factor(Month, labels = mon
th.abb[5:9])) 
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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
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[]\T1/pcr/m/n/10 duplicated(x, fromLast = TRUE) []\T1/ptm/m/n/10 is equiv-a-len
t to but faster than
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[]\T1/ptm/m/n/10 Do not use []\T1/pcr/m/n/10 dyn.unload []\T1/ptm/m/n/10 on a D
LL loaded by [][][]\T1/pcr/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 : use
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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 []\T1/pcr/m/n/9 Encoding(x.) # "unknown" (UTF-8 loc.) | "latin1" (8859-1/CP-12
52 loc.) | ....[] 
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[]\T1/ptm/m/n/10 The path to the de-fault browser. Used to set the de-fault val
ue of
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[]\T1/ptm/m/n/10 Optional. The path to Ghostscript, used by [][][]\T1/pcr/m/n/1
0 dev2bitmap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bitmap[][][] []\T1/pt
m/m/n/10 and
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[]\T1/ptm/m/n/10 The path to HTML []\T1/pcr/m/n/10 tidy[]\T1/ptm/m/n/10 . Used 
by []\T1/pcr/m/n/10 R CMD check []\T1/ptm/m/n/10 if
Underfull \hbox (badness 10000) in paragraph at lines 12900--12902
[]\T1/ptm/m/n/10 (and more). Op-tional. Set-tings for
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[]\T1/ptm/m/n/10 a frame in the call-ing list. Equiv-a-lent to giv-ing []\T1/pc
r/m/n/10 where []\T1/ptm/m/n/10 as
Underfull \hbox (badness 5970) in paragraph at lines 13193--13195
[]\T1/pcr/m/n/10 get0(): []\T1/ptm/m/n/10 The object---as from [][][]\T1/pcr/m/
n/10 get[][][](x, *)[]\T1/ptm/m/n/10 --- if []\T1/pcr/m/n/10 exists(x, *) []\T1
/ptm/m/n/10 is true, oth-er-wise
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 []\T1/pcr/m/n/9 ## "avector" := vector that keeps attributes.   Could provide 
a constructor[] 
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/pcr
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/pcr/m/n/10 fsep =
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[]\T1/ptm/m/n/10 logical: should file dates be pre-served where pos-si-ble? See
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 ,
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
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 []                     \T1/pcr/m/n/9 # |--> (TRUE,FALSE) : ok for A but not B 
as it exists already[] 
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 []\T1/pcr/m/n/10 dir.create(path, showWarnings = TRUE, recursive = FALSE, mode
 = "0777")[] 
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 unlink[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 basename[][][][]\T1/
ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 f <- list.files(".", all.files = TRUE, full.names = TRUE, recu
rsive = TRUE)[] 
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[]\T1/pcr/m/n/10 packageNotFoundError []\T1/ptm/m/n/10 cre-ates an er-ror con-d
i-tion ob-ject of class
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 []\T1/pcr/m/n/9 ## will not give an error, maybe a warning about *all* locatio
ns it is found:[] 
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 []\T1/pcr/m/n/10 findInterval(x, vec, rightmost.closed = FALSE, all.inside = F
ALSE, 
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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 []       \T1/pcr/m/n/10 .C(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING) 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 15669--15669
 [] \T1/pcr/m/n/10 .Fortran(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING)[] 
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 []\T1/pcr/m/n/9 ## formals returns a pairlist. Arguments with no default have 
type symbol (aka name).[] 
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 []\T1/pcr/m/n/9 ## formals returns NULL for primitive functions.  Use it in co
mbination with[] 
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[]\T1/ptm/m/n/10 either a log-i-cal spec-i-fy-ing whether el-e-ments of a real 
or com-plex vec-
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\T1/ptm/m/n/10 tor should be en-coded in sci-en-tific for-mat, or an in-te-ger 
penalty (see
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[]\T1/pcr/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 formatC[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 paste
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 sprintf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
rint[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 prettyNum[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 toString[][][][]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 z <- list(a = letters[1:3], b = (-pi+0i)^((-2:2)/2), c = c(1,1
0,100,1000),[] 
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[]\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 is used for ``pret-ti-fy-ing'' (p
os-si-bly for-mat-ted) num-bers, also in
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 []          \T1/pcr/m/n/10 decimal.mark = getOption("OutDec"), input.d.mark = 
decimal.mark,[] 
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 []\T1/pcr/m/n/10 .format.zeros(x, zero.print, nx = suppressWarnings(as.numeric
(x)),[] 
Underfull \hbox (badness 2790) in paragraph at lines 16296--16299
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/pcr/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
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[]\T1/pcr/m/n/10 "f" []\T1/ptm/m/n/10 gives num-bers in the usual []\T1/pcr/m/n
/10 xxx.xxx []\T1/ptm/m/n/10 for-mat; []\T1/pcr/m/n/10 "e" []\T1/ptm/m/n/10 and
 []\T1/pcr/m/n/10 "E" []\T1/ptm/m/n/10 give
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[]\T1/ptm/m/n/10 This works via []\T1/pcr/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/pcr/m/n/10 .format.zeros(*,
Underfull \hbox (badness 10000) in paragraph at lines 16425--16430
[]\T1/ptm/m/n/10 For num-bers, []\T1/pcr/m/n/10 formatC() []\T1/ptm/m/n/10 call
s []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 when needed which it-self calls
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[]\T1/ptm/m/n/10 If you set []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 it over-ri
des the set-ting of []\T1/pcr/m/n/10 mode[]\T1/ptm/m/n/10 , so []\T1/pcr/m/n/10
 formatC(123.45, mode =
Underfull \hbox (badness 10000) in paragraph at lines 16442--16450
[]\T1/pcr/m/n/10 prettyNum []\T1/ptm/m/n/10 is the util-ity func-tion for pret-
ti-fy-ing []\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 x []\T1/ptm/m/n
/10 can be com-plex (or
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 []\T1/pcr/m/n/9 fc <- formatC(1.234 + 10^(0:8), format = "fg", width = 11, big
.mark = "\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ")[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []\T1/pcr/m/n/9 doLC <- FALSE # <= R warns, so change to TRUE manually if you 
want see the effect[] 
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 []\T1/pcr/m/n/10 Reduce(f, x, init, right = FALSE, accumulate = FALSE, simplif
y = TRUE) 
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 []\T1/pcr/m/n/9 utils::tail(getLoadedDLLs(), 2) # the last 2 loaded ones, stil
l a DLLInfoList[] 
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Underfull \hbox (badness 2418) in paragraph at lines 17526--17530
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/pcr/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
Underfull \hbox (badness 6510) in paragraph at lines 17533--17536
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 name []\T1/ptm/m/n/10 con-tains only one s
ym-bol name and []\T1/pcr/m/n/10 unlist []\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 TR
UE[]\T1/ptm/m/n/10 , then the sin-gle
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[][][]\T1/pcr/m/n/10 getDLLRegisteredRoutines[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 is.loaded[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .C[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Fortran[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 .External[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Call[][][][]
\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 ## Not run: ## for translation, those strings should appear in
 R-pkg.pot as[] 
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 []\T1/pcr/m/n/9 if(is.na(thisLang) || !nzchar(thisLang)) thisLang <- "en" # "f
actory" default[] 
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 []\T1/pcr/m/n/9 gettext(enT, domain="R-stats")# "leeres Modell angegeben" (if 
translation works)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []\T1/pcr/m/n/9 ## Here, we reset to the *original* setting before the full ex
ample started:[] 
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 []\T1/pcr/m/n/10 grep(pattern, x, ignore.case = FALSE, perl = FALSE, value = F
ALSE, 
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[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 18255--18255
 []  \T1/pcr/m/n/9 nms <- nms[is.na(match(nms, c("F","T")))] # <-- work around 
"checking hack"[] 
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 []\T1/pcr/m/n/9 name.rex <- "(?<first>[[:upper:]][[:lower:]]+) (?<last>[[:uppe
r:]][[:lower:]]+)"[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []        \T1/pcr/m/n/10 value = FALSE, fixed = FALSE, all = FALSE, invert = F
ALSE)[] 
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 []\T1/pcr/m/n/9 (ii <- grouping(x <- c(1, 1, 3:1, 1:4, 3), y <- c(9, 9:1), z <
- c(2, 1:9))) 
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 []\T1/pcr/m/n/9 z <- gzcon(url("https://www.stats.ox.ac.uk/pub/datasets/csb/ch
12.dat.gz"))[] 
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 []\T1/pcr/m/n/10 iconv(x, from = "", to = "", sub = NA, mark = TRUE, toRaw = F
ALSE) 
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Underfull \hbox (badness 1360) in paragraph at lines 19152--19158
[]\T1/ptm/m/n/10 The most portable name for the ISO 8859-15 en-cod-ing, com-mon
ly known as `Latin 9',
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\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 "iso885915"[]\T1/ptm/m/n/10 : most plat-form
s sup-port both []\T1/pcr/m/n/10 "latin-9" []\T1/ptm/m/n/10 and[]\T1/pcr/m/n/10
 "latin9" []\T1/ptm/m/n/10 but GNU
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Underfull \hbox (badness 1163) in paragraph at lines 19374--19376
[]\T1/ptm/m/n/10 The ICU user guide chap-ter on col-la-tion ([][]$\T1/pcr/m/n/1
0 https : / / unicode-[]org . github . io / icu /
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19382--19382
 []\T1/pcr/m/n/9 ## As we don\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 t know the current s
ettings, we can only reset to the default.[] 
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 []\T1/pcr/m/n/10 identical(x, y, num.eq = TRUE, single.NA = TRUE, attrib.as.se
t = TRUE, 
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 []              \T1/pcr/m/n/10 num.eq = FALSE, single.NA = FALSE, attrib.as.se
t = FALSE,[] 
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 []              \T1/pcr/m/n/10 ignore.bytecode = FALSE, ignore.environment = F
ALSE,[] 
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 []\T1/pcr/m/n/9 ### For functions ("closure"s): ------------------------------
----------------[] 
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 []\T1/pcr/m/n/9 identical(f, g)                        # TRUE, as bytecode is 
ignored by default[] 
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 []\T1/pcr/m/n/9 ## GLM families contain several functions, some of which share
 an environment:[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19575--19575
 []\T1/pcr/m/n/9 op <- options(keep.source = TRUE) # and so, these have differi
ng "srcref" :[] 
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 []\T1/pcr/m/n/9 ## This is a (not atypical) case where it is better *not* to u
se ifelse(),[] 
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 []\T1/pcr/m/n/9 ## example of different return modes (and \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 test\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 alone determining length):[] 
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[]\T1/ptm/m/n/10 how some er-rors are han-dled and re-ported, e.g. see [][][]\T
1/pcr/m/n/10 stop[][][] []\T1/ptm/m/n/10 and
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[][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 ,
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\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle
 . com / cd / E19957-[]01 / 806-[]3568 / ncg _
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[]\T1/pcr/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/10 ISOdate(year, month, day, hour = 12, min = 0, sec = 0, tz = "
GMT")[] 
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[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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 []\T1/pcr/m/n/9 isSymmetric(D3)                         # FALSE (as row and co
lumn names differ)[] 
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 []\T1/pcr/m/n/9 isSymmetric(D3, check.attributes=FALSE) # TRUE  (as names are 
not checked)[] 
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 []\T1/pcr/m/n/10 .kappa_tri(z, exact = FALSE, LINPACK = TRUE, norm = NULL, upl
o = "U", ...)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 20850--20850
 []\T1/pcr/m/n/10 rcond(x, norm = c("O","I","1"), triangular = FALSE, uplo = "U
", ...)[] 
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[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
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 []\T1/pcr/m/n/9 ## Moore-Penrose inverse { ~= MASS::ginv(); differing tol (val
ue & meaning)}:[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 21012--21012
 []\T1/pcr/m/n/9 try( kappa(m76, exact=TRUE, norm="1") )# error in  solve().. m
ust be square[] 
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 []\T1/pcr/m/n/9 ## ==> use pseudo-inverse instead of solve() for rectangular {
and norm != "2"}:[] 
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 []    \T1/pcr/m/n/9 kappa(A, exact=TRUE, norm = "1", inv_z = solve(A, tol = 1e
-19)) ## 5.22057e16[] 
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[]\T1/ptm/m/n/10 The value of the in-ter-nal eval-u-a-tion of a top-level \T1/p
hv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sion is al-ways as-signed to
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[]\T1/ptm/m/n/10 In late 2017 a []\T1/pcr/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/pcr/m/n/10 libcurl []\T
1/ptm/m/n/10 and
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Underfull \hbox (badness 10000) in paragraph at lines 21865--21872
[][][]$\T1/pcr/m/n/10 https : / / curl . se / docs / sslcerts . html$[][] \T1/p
tm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / curl . se / docs /
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[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/pcr/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2970) in paragraph at lines 21996--21999
[]\T1/pcr/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/pcr/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a
Underfull \hbox (badness 2951) in paragraph at lines 21996--21999
\T1/ptm/m/n/10 hid-den di-rec-tory and may not be viewed by some soft-ware. It 
may be opened by
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[]\T1/ptm/m/n/10 To sup-press mes-sages dur-ing the load-ing of pack-ages use
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[][][]\T1/pcr/m/n/10 suppressPackageStartupMessages[][][][]\T1/ptm/m/n/10 : thi
s will sup-press all mes-sages from \T1/phv/m/n/10 R \T1/ptm/m/n/10 it-self
Underfull \hbox (badness 1221) in paragraph at lines 22114--22121
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 is called with no
 []\T1/pcr/m/n/10 package []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 help []\T1/ptm/m
/n/10 ar-gu-ment, it lists all avail-able pack-
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[][][]\T1/pcr/m/n/10 attach[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 detach
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 search[][][][]\T1/ptm/m/n/10 , []
[][]\T1/pcr/m/n/10 objects[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 autoloa
d[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 requireNamespace[][][][]\T1/ptm/
m/n/10 ,
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[]\T1/ptm/m/n/10 Do not use [][][]\T1/pcr/m/n/10 dyn.unload[][][] []\T1/ptm/m/n
/10 on a DLL loaded by []\T1/pcr/m/n/10 library.dynam[]\T1/ptm/m/n/10 : use
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 files[][][] []\T1/ptm/
m/n/10 for many more file han-dling func-tions and
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 []          \T1/pcr/m/n/9 identical(L$b, e$b)) # "$" working for environments 
as for lists[] 
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 []              \T1/pcr/m/n/9 df = data.frame(x = rnorm(20), y = rbinom(20, 1,
 prob = 0.2))),[] 
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 []\T1/pcr/m/n/9 ## This however annihilates all objects in .GlobalEnv with the
 same names ![] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 22930--22930
 []\T1/pcr/m/n/9 attach("all.rda") # safer and will warn about masked objects w
/ same name in .GlobalEnv[] 
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[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-
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[]\T1/ptm/m/n/10 Almost all the out-put rou-tines used by \T1/phv/m/n/10 R \T1/
ptm/m/n/10 it-self un-der Win-dows ig-nore the set-ting of
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 []\T1/pcr/m/n/9 Sys.setlocale("LC_TIME", "de_DE.UTF-8")  # Linux, macOS, other
 Unix-alikes[] 
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 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # in C_TIME locale \T
S1/pcr/m/n/9 '\T1/pcr/m/n/9 cT\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 ; typically German
[] 
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 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # "standard" (still p
latform specific ?)[] 
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 []\T1/pcr/m/n/9 ## Not run: Sys.setlocale("LC_COLLATE", "C")   # turn off loca
le-specific sorting,[] 
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 []\T1/pcr/m/n/9 Sys.setenv("LANGUAGE" = "es") # set the language for error/war
ning messages[] 
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[][][]\T1/pcr/m/n/10 raw[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logical[]
[][] []\T1/ptm/m/n/10 or `number-like' vec-tors (i.e., of types [][][]\T1/pcr/m
/n/10 double[][][] []\T1/ptm/m/n/10 (class
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 []\T1/pcr/m/n/9 zN <- c(complex(real = NA , imaginary =  r ), complex(real =  
r , imaginary = NA ),[] 
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 []        \T1/pcr/m/n/9 complex(real =  r , imaginary = NaN), complex(real = N
aN, imaginary =  r ))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 24168--24168
 []\T1/pcr/m/n/9 zM ##--> many "NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s" (= 1) and th
e four non-NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s (3 different ones, at 7,9,10)[] 
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 []\T1/pcr/m/n/9 match.arg(c("a", ""),  c("", NA, "bb", "abc"), several.ok=TRUE
) # |-->  "abc"[] 
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[]\T1/ptm/m/n/10 `function' on this help page means an in-ter-preted func-tion 
(also known as a `clo-sure'):
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[]\T1/ptm/m/n/10 For ma-trix \T1/ptm/m/it/10 cross \T1/ptm/m/n/10 prod-ucts, []
[][]\T1/pcr/m/n/10 crossprod[][][]() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 tcro
ssprod() []\T1/ptm/m/n/10 are typ-i-cally prefer-able.
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[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
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\T1/ptm/m/n/10 changed to al-low more (up to 3Gb). See [][]$\T1/pcr/m/n/10 http
s : / / docs . microsoft . com / en-[]gb /
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 []      \T1/pcr/m/n/10 by.x = by, by.y = by, all = FALSE, all.x = all, all.y =
 all,[] 
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[]\T1/pcr/m/n/10 anyNA(recursive = FALSE) []\T1/ptm/m/n/10 works the same way a
s []\T1/pcr/m/n/10 is.na[]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 anyNA(recursive =
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[]\T1/pcr/m/n/10 as.name []\T1/ptm/m/n/10 first co-erces its ar-gu-ment in-ter-
nally to a char-ac-ter vec-tor (so meth-ods for
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[]\T1/ptm/m/n/10 For an [][][]\T1/pcr/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list,
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\T1/ptm/m/n/10 i.e., []\T1/pcr/m/n/10 names(as.list(env, all.names = TRUE)) []\
T1/ptm/m/n/10 which are also given by [][][]\T1/pcr/m/n/10 ls[][][](env,
Underfull \hbox (badness 3148) in paragraph at lines 25988--25994
\T1/pcr/m/n/10 all.names = TRUE, sorted = FALSE)[]\T1/ptm/m/n/10 . If the en-vi
-ron-ment is used as a hash ta-ble,
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[]\T1/ptm/m/n/10 character string: par-tial match-ing to one of []\T1/pcr/m/n/1
0 c("bytes", "chars",
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[]\T1/ptm/m/n/10 optional [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/pcr/m/n/10 print()[]\T1/ptm/m/n/10 , used by
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\T1/ptm/m/n/10 tion []\T1/pcr/m/n/10 GetFinalPathNameByHandle []\T1/ptm/m/n/10 
and in case of an er-ror (such as in-suf-fi-cient per-
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[]\T1/ptm/m/n/10 Loading a names-pace should where pos-si-ble be silent, with s
tartup mes-sages given by
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[]\T1/pcr/m/n/10 .onAttach[]\T1/ptm/m/n/10 . These mes-sages (and any es-sen-ti
al ones from []\T1/pcr/m/n/10 .onLoad[]\T1/ptm/m/n/10 ) should use
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[]\T1/ptm/m/n/10 Uses of []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 with ar-gu-m
ent []\T1/pcr/m/n/10 help []\T1/ptm/m/n/10 to dis-play ba-sic in-for-ma-tion ab
out the pack-
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\T1/ptm/m/n/10 age should use []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 on the c
om-puted pack-age in-for-ma-tion ob-ject and pass this to
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 []\T1/pcr/m/n/10 attachNamespace(ns, pos = 2L, depends = NULL, exclude, includ
e.only) 
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 []              \T1/pcr/m/n/10 keep.parse.data = getOption("keep.parse.data.pk
gs"))[] 
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[]\T1/pcr/m/n/10 loadNamespace []\T1/ptm/m/n/10 does not at-tach the name space
 it loads to the search path.
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[]\T1/pcr/m/n/10 attachNamespace []\T1/ptm/m/n/10 can be used to at-tach a fram
e con-tain-ing the ex-ported val-ues of a
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[]\T1/pcr/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/pcr/m/n/10 pkg %in%
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 [] \T1/pcr/m/n/9 ## The string "foo" and the symbol \TS1/pcr/m/n/9 '\T1/pcr/m/
n/9 foo\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 can be used interchangably here:[] 
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[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 is.numeric []\T1/ptm/
m/n/10 re-turns []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 if its ar-gu-ment is of 
[][]mode[][][]
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\T1/ptm/m/n/10 ject as ob-tained by [][][]\T1/pcr/m/n/10 R.version[][][][]\T1/p
tm/m/n/10 . For []\T1/pcr/m/n/10 as.numeric_version []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 date ob-jects or char-ac-ter vec-tors. (Char-ac-ter vec-tors a
re con-verted by
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[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-
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[]\T1/ptm/m/n/10 default PDF viewer. The de-fault is set from the en-vi-ron-men
t vari-able
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Underfull \hbox (badness 3138) in paragraph at lines 28446--28452
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/pcr/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/pcr/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
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\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 1389) in paragraph at lines 28485--28487
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
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[]\T1/ptm/m/n/10 logical: should per-directory pack-age lock-ing be used by
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[]\T1/ptm/m/n/10 Used by [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
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[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/pcr/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/pcr/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The de-fault type of pack-ages to be down-loaded and in-stalle
d -- see
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[]\T1/pcr/m/n/10 "source" []\T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN 
ma-cOS
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\T1/ptm/m/n/10 build), []\T1/pcr/m/n/10 "mac.binary" []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 "both" []\T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS
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\T1/ptm/m/n/10 builds). ([]\T1/pcr/m/n/10 "mac.binary.el-capitan"[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 "mac.binary.mavericks"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 5091) in paragraph at lines 28573--28579
[]\T1/pcr/m/n/10 "mac.binary.leopard" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "ma
c.binary.universal" []\T1/ptm/m/n/10 are no longer
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 28954--28954
 []\T1/pcr/m/n/9 system.time(o <- sort.list(xx, method = "radix")) # 0.007 sec,
 300X faster[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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[]\T1/ptm/m/n/10 where el-e-ment []\T1/pcr/m/n/10 A[c(arrayindex.x, arrayindex.
y)] = FUN(X[arrayindex.x],
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[]\T1/pcr/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/pcr/m/n/10 parse(tex
t=s,
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 []\T1/pcr/m/n/9 tryCatch(parse(text = txt, srcfile = sf), error = function(e) 
"Syntax error.")[] 
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\T1/ptm/m/n/10 zero-length [][][]\T1/pcr/m/n/10 character[][][](0)[]\T1/ptm/m/n
/10 . Note that when []\T1/pcr/m/n/10 collapse []\T1/ptm/m/n/10 is a string,
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[][][]\T1/pcr/m/n/10 toString[][][] []\T1/ptm/m/n/10 typ-i-cally calls []\T1/pc
r/m/n/10 paste(*, collapse=", ")[]\T1/ptm/m/n/10 . String ma-nip-u-la-tion with
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 []\T1/pcr/m/n/9 ## Notice that the recycling rules make every input as long as
 the longest input.[] 
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 []\T1/pcr/m/n/9 paste("1st", "2nd", "3rd", collapse = ", ") # probably not wha
t you wanted[] 
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 []\T1/pcr/m/n/9 ## zero length arguments recycled as \TS1/cmtt/m/n/9 `\T1/pcr/
m/n/9 ""\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 -- NB: \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 {
}\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 <==> character(0)  here[] 
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 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 recycle0 = TRUE\TS1/pcr/m/n/9
 ' \T1/pcr/m/n/9 allows standard vectorized behaviour, i.e., zero-length[] 
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 []\T1/pcr/m/n/9 ##                   recycling resulting in zero-length result
 character(0):[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 29452--29452
 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- not so good!") # ->  "..
 value is  -- not .."[] 
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 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- good: empty!", recycle0=
TRUE) # -> character(0)[] 
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 []\T1/pcr/m/n/9 paste("foo", {}, "bar", collapse = "|")                  # |--
>  "foo  bar"[] 
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 []\T1/pcr/m/n/9 ## If all arguments are empty (and collapse a string),   ""  r
esults always[] 
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 []\T1/pcr/m/n/9 mtcars |> subset(cyl == 4) |> nrow()  # same as nrow(subset(mt
cars, cyl == 4))[] 
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 []\T1/pcr/m/n/9 stop() |> (function(...) {})() # stop() is not used on RHS so 
is not evaluated[] 
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[]\T1/ptm/m/n/10 All other []\T1/pcr/m/n/10 type[]\T1/ptm/m/n/10 s give a warn-
ing or an er-ror; us-ing, e.g., []\T1/pcr/m/n/10 type =
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Underfull \hbox (badness 2277) in paragraph at lines 30030--30035
\T1/ptm/m/n/10 i.e., strictly in-clude the bounds of []\T1/pcr/m/n/10 x[]\T1/pt
m/m/n/10 . New from \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0, al-low-ing
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Underfull \hbox (badness 1701) in paragraph at lines 30146--30150
[]\T1/ptm/m/n/10 This func-tion is al-most never used: []\TS1/cmtt/m/n/10 `\T1/
pcr/m/n/10 name\TS1/cmtt/m/n/10 ` []\T1/ptm/m/n/10 or, more care-fully, [][][]\
T1/pcr/m/n/10 get[][][](name, envir =
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[]\T1/ptm/m/n/10 character string (or []\T1/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/pcr/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
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[]\T1/ptm/m/n/10 Option []\T1/pcr/m/n/10 width []\T1/ptm/m/n/10 con-trols the p
rint-ing of vec-tors, ma-tri-ces and ar-rays, and op-tion
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 []\T1/pcr/m/n/9 (x <- 2^seq(-8, 30, by=1/4)) # auto-prints; by default all in 
"exponential" format[] 
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Underfull \hbox (badness 2961) in paragraph at lines 30979--30982
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
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 []           \T1/pcr/m/n/9 c1 = rep(c(1,0,0), 2), c2 = rep(c(0,1,0), 2), c3 = 
rep(c(0,0,1),2))[] 
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 []\T1/pcr/m/n/9 (nn <- "\u0126\u0119\u1114\u022d\u2001\u03e2\u0954\u0f3f\u13d3
\u147b\u203c")[] 
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 []\T1/pcr/m/n/9 n2 <- "\U0126\U0119\U1114\U022d\U2001\U03e2\U0954\U0f3f\U13d3\
U147b\U203c"[] 
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 []\T1/pcr/m/n/9 ## https://cran.r-project.org/doc/manuals/r-release/R-lang.htm
l#Literal-constants[] 
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 []\T1/pcr/m/n/9 ## nul characters (for terminating strings in C) are not allow
ed (parse errors)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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[]\T1/ptm/m/n/10 Do \T1/ptm/m/it/10 not \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R.v
ersion$os []\T1/ptm/m/n/10 to test the plat-form the code is run-ning on: use
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 []\T1/pcr/m/n/9 mtext(R.version.string, side = 1, line = 4, adj = 1) # a usefu
l bottom-right note[] 
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 []\T1/pcr/m/n/10 set.seed(seed, kind = NULL, normal.kind = NULL, sample.kind =
 NULL)[] 
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[]\T1/pcr/m/n/10 normal.kind []\T1/ptm/m/n/10 can be []\T1/pcr/m/n/10 "Kinderma
n-Ramage"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Buggy Kinderman-Ramage" []\T1/ptm
/m/n/10 (not
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\T1/ptm/m/n/10 uni-form pseudo-random num-ber gen-er-a-tor, \T1/ptm/m/it/10 ACM
 Trans-ac-tions on Mod-el-ing and Com-puter
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\T1/ptm/m/n/10 Now see [][]$\T1/pcr/m/n/10 http : / / www . math . sci . hirosh
ima-[]u . ac . jp / ~m-[]mat / MT / VERSIONS /
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[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
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 []     \T1/pcr/m/n/10 ties.method = c("average", "first", "last", "random", "m
ax", "min"))[] 
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[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/pcr/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
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 []\T1/pcr/m/n/9 rapply(X, function(x) x, how = "replace") -> X.; stopifnot(ide
ntical(X, X.))[] 
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 []\T1/pcr/m/n/9 rapply(X, deparse, control = "all") # passing extras. argument
 of deparse()[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "list")[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character",                      h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 rapply(E, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 ## Bit representation  [ sign | exponent | mantissa ] of doubl
e prec numbers :[] 
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 []\T1/pcr/m/n/9 bitC <- function(x) noquote(vapply(as.double(x), function(x) {
 # split one double[] 
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 []\T1/pcr/m/n/9 d2bI <- function(x) vapply(as.double(x), function(x) intToBits
(numToInts(x)), raw(64L))[] 
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 []\T1/pcr/m/n/9 d2b  <- function(x) vapply(as.double(x), function(x)          
 numToBits(x) , raw(64L))[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:
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[]\T1/ptm/m/n/10 Either an ob-ject whose mode will give the mode of the vec-tor
 to
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\T1/ptm/m/n/10 be read, or a char-ac-ter vec-tor of length one de-scrib-ing the
 mode:
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\T1/ptm/m/n/10 one of []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/pcr/m/
n/10 "double"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 "int"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/
10 ,
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 infoRDS[]\T1/ptm/m/n/10 , an \T1/phv/m/n/
10 R \T1/ptm/m/n/10 list with el-e-ments []\T1/pcr/m/n/10 version []\T1/ptm/m/n
/10 (ver-sion num-ber, cur-rently 2 or 3),
Overfull \hbox (4.38043pt too wide) in paragraph at lines 33342--33342
 []\T1/pcr/m/n/9 ## or examine the object via a connection, which will be opene
d as needed.[] 
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[]\T1/pcr/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1968) in paragraph at lines 33874--33876
[]\T1/ptm/m/n/10 This help page is based on the TRE doc-u-men-ta-tion and the P
OSIX stan-dard, and the
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Underfull \hbox (badness 10000) in paragraph at lines 33885--33887
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/pcr/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs /
Underfull \hbox (badness 1975) in paragraph at lines 33888--33892
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/pcr/m
/n/10 https : / / www .
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 34260--34260
 []\T1/pcr/m/n/9 rep(1:4, each = 2, times = 3)         # length 24, 3 complete 
replications[] 
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[][][]\T1/pcr/m/n/10 TRUE[][][] [][]FALSE[][][] [][]NULL[][][] [][]Inf[][][] []
[]NaN[][][] [][]NA[][][] [][]NA_integer_[][][] [][]NA_real_[][][] [][]NA_comple
x_[][][]
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[]\T1/pcr/m/n/10 signif []\T1/ptm/m/n/10 rounds the val-ues in its first ar-gu-
ment to the spec-i-fied num-ber of \T1/ptm/m/it/10 sig-nif-i-cant
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\T1/ptm/m/n/10 dig-its. Hence, for []\T1/pcr/m/n/10 numeric x[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 signif(x, dig) []\T1/ptm/m/n/10 is the same as []\T1/pcr/m/n/
10 round(x, dig -
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"))[] 
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
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 []           \T1/pcr/m/n/10 useHash = (n > 1e+07 && !replace && is.null(prob) 
&& size <= n/2))[] 
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 []     \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, skipNul =
 FALSE)[] 
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
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 []\T1/pcr/m/n/9 cat("TITLE extra line", "2 3 5 7", "11 13 17", file = "ex.data
", sep = "\n") 
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[]\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence []\T1/pcr/
m/n/10 1, 2, ..., length(along.with)[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 5563) in paragraph at lines 36142--36148
[]\T1/ptm/m/n/10 The fifth form gen-er-ates the se-quence []\T1/pcr/m/n/10 1, 2
, ..., length(from) []\T1/ptm/m/n/10 (as if ar-gu-ment
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[]\T1/pcr/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use
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\T1/ptm/m/n/10 with []\T1/pcr/m/n/10 getConnection[]\T1/ptm/m/n/10 , cor-re-spo
nd-ing to the row names of the ta-ble re-turned by
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[]\T1/ptm/m/n/10 In Win-dows, com-mand line in-ter-pre-ta-tion is done by the a
p-pli-ca-tion as well as the
Underfull \hbox (badness 3492) in paragraph at lines 36819--36830
\T1/ptm/m/n/10 shell. It may de-pend on the com-piler used: Mi-crosoft's rules 
for the C run-time
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\T1/ptm/m/n/10 are given at [][]$\T1/pcr/m/n/10 https : / / learn . microsoft .
 com / en-[]us / cpp / c-[]language /
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\T1/pcr/m/n/10 parsing-[]c-[]command-[]line-[]arguments ? view = msvc-[]160$[][
]\T1/ptm/m/n/10 . It may de-pend on the
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 []         \T1/pcr/m/n/10 method = c("auto", "shell", "quick", "radix"), index
.return = FALSE)[] 
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 []\T1/pcr/m/n/9 sort_by.data.frame(mtcars, ~ list(am, -mpg)) |> subset(select 
= c(am, mpg))[] 
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 []              \T1/pcr/m/n/10 print. = TRUE, echo = TRUE, max.deparse.length 
= Inf,[] 
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 []              \T1/pcr/m/n/10 deparseCtrl = c("keepInteger", "showAttributes"
, "keepNA"),[] 
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 vec-tor, passed as []\T1/
pcr/m/n/10 control []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 deparse[][][]()[]\T
1/ptm/m/n/10 , see also
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[][][]\T1/pcr/m/n/10 .deparseOpts[][][][]\T1/ptm/m/n/10 . In \T1/phv/m/n/10 R \
T1/ptm/m/n/10 ver-sion <= 3.3.x, this was hard-coded to
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 []\T1/pcr/m/n/9 ## (all should look "as if on top level", e.g. non-assignments
 should print:)[] 
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 []\T1/pcr/m/n/9 ### Calculate \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 z-scores\TS1/pcr/m
/n/9 ' \T1/pcr/m/n/9 by group (standardize to mean zero, variance one)[] 
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 []\T1/pcr/m/n/9 ## Notice that assignment form is not used since a variable is
 being added[] 
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[][][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions /
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 []\T1/pcr/m/n/10 srcfile(filename, encoding = getOption("encoding"), Enc = "un
known") 
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 []\T1/pcr/m/n/10 srcfilecopy(filename, lines, timestamp = Sys.time(), isFile =
 FALSE)[] 
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 []\T1/pcr/m/n/9 startsWith(search(), "package:") # typically at least two FALS
E, nowadays often three 
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[]\T1/ptm/m/n/10 A func-tion []\T1/pcr/m/n/10 .First []\T1/ptm/m/n/10 (and [][]
[]\T1/pcr/m/n/10 .Last[][][][]\T1/ptm/m/n/10 ) can be de-fined in ap-pro-pri-at
e `\T1/pcr/m/n/10 .Rprofile\T1/ptm/m/n/10 ' or
Underfull \hbox (badness 2635) in paragraph at lines 39104--39114
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' files or have been
 saved in `\T1/pcr/m/n/10 .RData\T1/ptm/m/n/10 '. If you want a dif-fer-ent
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\T1/ptm/m/n/10 set of pack-ages than the de-fault ones when you start, in-sert 
a call to [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 in the
Underfull \hbox (badness 1231) in paragraph at lines 39104--39114
\T1/pcr/m/n/10 = character()) []\T1/ptm/m/n/10 will at-tach no ex-tra pack-ages
 on startup (only the \T1/ptm/b/n/10 base \T1/ptm/m/n/10 pack-age) (or
Underfull \hbox (badness 1112) in paragraph at lines 39104--39114
\T1/ptm/m/n/10 set []\T1/pcr/m/n/10 R_DEFAULT_PACKAGES=NULL []\T1/ptm/m/n/10 as
 an en-vi-ron-ment vari-able be-fore run-ning \T1/phv/m/n/10 R\T1/ptm/m/n/10 ).
 Us-ing
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[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/pcr/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
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\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/pcr/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be
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[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
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 []\T1/pcr/m/n/9 # Variable expansion in double quotes, string literals with ba
ckslashes in[] 
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[]\T1/ptm/m/n/10 The de-fault han-dler stores the er-ror mes-sage in a buffer; 
it can be re-trieved by
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[]\T1/pcr/m/n/10 geterrmessage()[]\T1/ptm/m/n/10 . It also stores a trace of th
e call stack that can be re-trieved by
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[]\T1/ptm/m/n/10 alternative to []\T1/pcr/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/pcr/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
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 [] \T1/pcr/m/n/10 assert <- function(exprs) eval.parent(substitute(stopifnot(e
xprs = exprs))) 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(pi, 3.141593),  2 < 2, (1:10 < 12), "a" < 
"b") |> try()[] 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(rep(list(pi),4), list(3.1, 3.14, 3.141, 3.
1415))) |> try()[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 '   \T1/pcr/m/n/9 {Yes, learn how to use do.c
all(substitute, ...) in a powerful manner !!}[] 
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 []\T1/pcr/m/n/9 bdy        <- do.call(substitute, list(bdy,   list(stopifnot =
 quote(warnifnot))))[] 
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 []\T1/pcr/m/n/9 bdy[[N-1]] <- do.call(substitute, list(bdy[[N-1]], list(stop =
 quote(warning))))[] 
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[]\T1/ptm/m/n/10 integer de-ter-min-ing the []\T1/pcr/m/n/10 format()[]\T1/ptm/
m/n/10 ing of sec-onds when needed. Note
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 []\T1/pcr/m/n/9 z3 # prints without fractional seconds by default, digits.sec 
= NULL ("= 0")[] 
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 []\T1/pcr/m/n/9 format(s1 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 19
78-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 day
\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ,   len =  7), "%a")[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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 []\T1/pcr/m/n/9 format(s2 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 20
00-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 mon
th\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 12), "%b")[] 
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 []            \T1/pcr/m/n/10 add the string to the left of the match to the ou
tput.[] 
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 []        \T1/pcr/m/n/10 exdent = 0, prefix = "", simplify = TRUE, initial = p
refix)[] 
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 []\T1/pcr/m/n/9 x <- paste(readLines(file.path(R.home("doc"), "THANKS")), coll
apse = "\n")[] 
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 []\T1/pcr/m/n/9 ## In fact, you can pass vectors into several arguments, and e
verything gets added.[] 
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 []\T1/pcr/m/n/9 ## If there are missing values, the sum is unknown, i.e., also
 missing, ....[] 
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[]\T1/ptm/m/n/10 integer, used for num-ber for-mat-ting with [][][]\T1/pcr/m/n/
10 signif[][][]() []\T1/ptm/m/n/10 (for
Underfull \hbox (badness 10000) in paragraph at lines 40932--40939
[]\T1/pcr/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][][]\T1/pcr/m/n/10 form
at[][][]() []\T1/ptm/m/n/10 (for []\T1/pcr/m/n/10 summary.data.frame[]\T1/ptm/m
/n/10 ).
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 []\T1/pcr/m/n/9 summary(attenu, digits = 4) #-> summary.data.frame(...), defau
lt precision 
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 []    \T1/pcr/m/n/9 cat(ch,":", switch(EXPR = ch, a =, A = 1, b = 2:3, "Otherw
ise: last"),"\n")[] 
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 []\T1/pcr/m/n/9 if(.Platform$OS.type == "unix") ## on Unix-alikes such Linux, 
macOS, FreeBSD:[] 
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[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-
Underfull \hbox (badness 1237) in paragraph at lines 41539--41545
\T1/ptm/m/n/10 tails of wild-cards ex-pan-sion, see your sys-tem's doc-u-men-ta
-tion on the []\T1/pcr/m/n/10 glob []\T1/ptm/m/n/10 sys-tem call.
Underfull \hbox (badness 4792) in paragraph at lines 41557--41562
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/pcr/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
Underfull \hbox (badness 1107) in paragraph at lines 41557--41562
[]\T1/pcr/m/n/10 Sys.glob("*.RData") []\T1/ptm/m/n/10 may or may not match `\T1
/pcr/m/n/10 .RData\T1/ptm/m/n/10 ' but will not usu-ally match
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Underfull \hbox (badness 10000) in paragraph at lines 41846--41850
[]\T1/pcr/m/n/10 sys.status() []\T1/ptm/m/n/10 re-turns a list with com-po-nent
s []\T1/pcr/m/n/10 sys.calls[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sys.parents []\
T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 sys.call []\T1/ptm/m/n/10 re-turns a call, []\T1/pcr/m/n/10 sy
s.function []\T1/ptm/m/n/10 a func-tion def-i-ni-tion, and []\T1/pcr/m/n/10 sys
.frame []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/9 is.symlink <- function(paths) isTRUE(nzchar(Sys.readlink(paths
), keepNA=TRUE))[] 
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 []\T1/pcr/m/n/9 print(Sys.setenv(R_TEST = "testit", "A+C" = 123))  # \TS1/cmtt
/m/n/9 `\T1/pcr/m/n/9 A+C\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 could also be used 
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[]\T1/ptm/m/n/10 logical. If []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
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[][][]\T1/pcr/m/n/10 source[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 lo
adNamespace[][][] []\T1/ptm/m/n/10 which is called from [][][]\T1/pcr/m/n/10 li
brary[][][](.) []\T1/ptm/m/n/10 and uses
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[]\T1/ptm/m/n/10 a log-i-cal (not []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 ) in-di-c
at-ing whether mes-sages writ-ten to `\T1/pcr/m/n/10 stdout\T1/ptm/m/n/10 ' or
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\T1/ptm/m/n/10 con-sider it to be piped or redi-rected: []\T1/pcr/m/n/10 stdout
 = TRUE []\T1/ptm/m/n/10 uses a pipe whereas []\T1/pcr/m/n/10 stdout =
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[]\T1/ptm/m/n/10 Use [][][]\T1/pcr/m/n/10 ftable[][][] []\T1/ptm/m/n/10 for pri
nt-ing (and more) of mul-ti-di-men-sional ta-bles. [][][]\T1/pcr/m/n/10 margin.
table[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/pcr/m/n/10 bin []\T1/ptm/m/n/10 can
 have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/pcr/
m/n/10 length(bin) >
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 []            \T1/pcr/m/n/9 matrix(c(1L, 2L, NA, 3L), 2, dimnames = list(c("1"
, "2"), c("A", "B")))),[] 
Overfull \hbox (30.0281pt too wide) in paragraph at lines 43439--43439
 []            \T1/pcr/m/n/9 array(list(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 2\TS1/cm
tt/m/n/9 ` \T1/pcr/m/n/9 = structure(c(2, 5.75, 9.5, 13.25, 17), names = nq),[]
 
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 []                 \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 4\TS1/cmtt/m/n/9 ` \T1/pcr/m
/n/9 = NULL, \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 5\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 = 
NULL), dim=4, dimnames=list(as.character(2:5)))))[] 
Underfull \hbox (badness 10000) in paragraph at lines 43454--43456
[]\T1/pcr/m/n/10 removeTaskCallback []\T1/ptm/m/n/10 un-registers a func-tion t
hat was reg-is-tered ear-lier via
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[][][]\T1/pcr/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer .
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Underfull \hbox (badness 3872) in paragraph at lines 43652--43655
[]\T1/ptm/m/n/10 Duncan Tem-ple Lang (2001) \T1/ptm/m/it/10 Top-level Task Call
-backs in R\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / developer .
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[][][]\T1/pcr/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/pcr/m/n/10 https : / /
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\T1/ptm/m/n/10 may also be known as `[]\T1/pcr/m/n/10 GB[]\T1/ptm/m/n/10 ', `[]
\T1/pcr/m/n/10 GB-Eire[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Belfast[]\T1
/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Guernsey[]\T1/ptm/m/n/10 ',
Underfull \hbox (badness 2253) in paragraph at lines 44147--44152
[]\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-turns a char-ac-ter vec-tor, se
e the ex-am-ples for typ-i-cal cases. It may
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\T1/ptm/m/n/10 have an at-tribute []\T1/pcr/m/n/10 "Version"[]\T1/ptm/m/n/10 , 
some-thing like `[]\T1/pcr/m/n/10 "2023a"[]\T1/ptm/m/n/10 '. (It does on sys-te
ms us-ing
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[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-
turns the time-zone names known to the cur-rently se-
Underfull \hbox (badness 3954) in paragraph at lines 44201--44210
\T1/ptm/m/n/10 lected Ol-son/IANA database. The system-specific lo-ca-tion in t
he file sys-tem varies,
[640]
Underfull \hbox (badness 1337) in paragraph at lines 44298--44306
\T1/ptm/m/n/10 a file `\T1/pcr/m/n/10 localtime\T1/ptm/m/n/10 ', usu-ally un-de
r `\T1/pcr/m/n/10 /etc\T1/ptm/m/n/10 ' (but pos-si-bly un-der `\T1/pcr/m/n/10 /
usr/local/etc\T1/ptm/m/n/10 ' or
Underfull \hbox (badness 10000) in paragraph at lines 44307--44310
[]\T1/ptm/m/n/10 `Because the time zone iden-ti-fier is ex-tracted from the sym
-link tar-get name of
[641]
Underfull \hbox (badness 3460) in paragraph at lines 44366--44369
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / data . iana . org /
Underfull \hbox (badness 4429) in paragraph at lines 44370--44372
[][][]$\T1/pcr/m/n/10 https : / / data . iana . org / time-[]zones / theory . h
tml$[][] \T1/ptm/m/n/10 for the `rules' of the Ol-
Overfull \hbox (31.3804pt too wide) in paragraph at lines 44379--44379
 []\T1/pcr/m/n/9 ## typically some acronyms/aliases such as "UTC", "NZ", "MET",
 "Eire", ..., but[] 
[642]
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Overfull \hbox (15.18042pt too wide) in paragraph at lines 44720--44720
 []\T1/pcr/m/n/9 trace(pt, tracer = quote(cat(sprintf("tracing pt(*, ncp = %.15
g)\n", ncp))),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 44722--44722
 []\T1/pcr/m/n/9 power.t.test(20, 1, power=0.8, sd=NULL)  ##--> showing the ncp
 root finding:[] 
[647]
[648]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 44819--44819
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
Overfull \hbox (84.78088pt too wide) in paragraph at lines 44821--44821
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
[649]
[650]
[651]
Underfull \hbox (badness 6542) in paragraph at lines 45095--45097
[]\T1/pcr/m/n/10 cospi(x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sinpi(x)[]\T1/ptm/
m/n/10 , and []\T1/pcr/m/n/10 tanpi(x)[]\T1/ptm/m/n/10 , com-pute []\T1/pcr/m/n
/10 cos(pi*x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sin(pi*x)[]\T1/ptm/m/n/10 , an
d
[652]
[653]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 45214--45214
 []\T1/pcr/m/n/10 trimws(x, which = c("both", "left", "right"), whitespace = "[
 \t\r\n]") 
[654]
Underfull \hbox (badness 1708) in paragraph at lines 45282--45290
[]\T1/pcr/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
 er-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 3713) in paragraph at lines 45282--45290
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/pcr/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[655]
Underfull \hbox (badness 4859) in paragraph at lines 45322--45327
[][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 for set-ting er-ror han-dle
rs and sup-press-ing the print-ing of er-ror mes-sages;
[656]
Underfull \hbox (badness 3895) in paragraph at lines 45384--45397
[]\T1/ptm/m/n/10 A char-ac-ter string. The pos-si-ble val-ues are listed in the
 struc-ture []\T1/pcr/m/n/10 TypeTable []\T1/ptm/m/n/10 in
Underfull \hbox (badness 1303) in paragraph at lines 45384--45397
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/main/util.c\T1/ptm/m/n/10 '. Cur-rent val-ue
s are the vec-tor types []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "integer"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2452) in paragraph at lines 45384--45397
[]\T1/pcr/m/n/10 "promise"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "object"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "language"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "char"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "..."[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "a
ny"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expression"[]\T1/ptm/m/n/10 ,
[657]
[658]
[659]
[660]
[661]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 45733--45733
 []\T1/pcr/m/n/9 ll <- list(as.name("sinc"), quote( a + b ), 1:10, letters, exp
ression(1+x))[] 
[662]
[663]
[664]
Underfull \hbox (badness 1137) in paragraph at lines 45872--45879
[]\T1/ptm/m/n/10 When a func-tion call-ing []\T1/pcr/m/n/10 UseMethod("fun") []
\T1/ptm/m/n/10 is ap-plied to an ob-ject with class vec-tor
[665]
[666]
[667]
[668]
[669]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 46251--46251
 []\T1/pcr/m/n/9 (xx <- intToUtf8(x, , TRUE)) # will only display in some local
es and fonts[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 46260--46260
 []\T1/pcr/m/n/9 system(paste("od -x", foo)) # 2-byte units, correct on little-
endian platforms[] 
[670]
Underfull \hbox (badness 1721) in paragraph at lines 46322--46339
[][][]\T1/pcr/m/n/10 file.rename[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 f
ile.symlink[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 dir.create[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dir.exists[][][][]\T1/ptm/m/n/10 , [][][]\
T1/pcr/m/n/10 normalizePath[][][][]\T1/ptm/m/n/10 ,
[671]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 46424--46424
 []\T1/pcr/m/n/9 try( substr(x, 1,1) ) # gives \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 in
valid multibyte string\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 error in a UTF-8 locale[] 
[672]
Underfull \hbox (badness 1803) in paragraph at lines 46487--46490
[]\T1/ptm/m/n/10 The atomic modes are []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric" []\
T1/ptm/m/n/10 (syn-onym []\T1/pcr/m/n/10 "double"[]\T1/ptm/m/n/10 ),
Underfull \hbox (badness 3471) in paragraph at lines 46491--46497
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 mode = "any"[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 is.vector []\T1/ptm/m/n/10 may re-turn []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/
n/10 for the atomic modes, [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 and
[673]
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[675]
Underfull \hbox (badness 1014) in paragraph at lines 46719--46722
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if
[676]
[677]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 46828--46828
 []      \T1/pcr/m/n/10 header = ngettext(n, "Warning message:\n", "Warning mes
sages:\n"),[] 
[678]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 46905--46905
 []\T1/pcr/m/n/9 ## at the end prints all three warnings, from the \TS1/pcr/m/n
/9 '\T1/pcr/m/n/9 option(warn = 0)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 above[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 46913--46913
 []\T1/pcr/m/n/9 x <- 1:36; for(n in 1:13) for(m in 1:12) A <- matrix(x, n,m) #
 There were 105 warnings ...[] 
[679]
Underfull \hbox (badness 1783) in paragraph at lines 46978--46980
[]\T1/pcr/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 months []\T1/pt
m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[680]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 47008--47008
 []\T1/pcr/m/n/9 ## Show how easily you get month, day, year, day (of {month, w
eek, yr}), ... :[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 47020--47020
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Even simpler:  Date -> Matrix
 - dropping time info {sec,min,hour, isdst}[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 47023--47023
 []\T1/pcr/m/n/9 d2mat(seq(as.Date("2000-02-02"), by=1, length.out=30)) # has R
 1.0.0\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s release date[] 
[681]
Underfull \hbox (badness 10000) in paragraph at lines 47085--47090
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 arr.ind == TRUE []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 x []\T1/ptm/m/n/10 is an [][][]\T1/pcr/m/n/10 array[][][] []\T1/ptm
/m/n/10 (has a [][][]\T1/pcr/m/n/10 dim[][][] []\T1/ptm/m/n/10 at-tribute), the
 re-sult is
Underfull \hbox (badness 2564) in paragraph at lines 47085--47090
[]\T1/pcr/m/n/10 arrayInd(which(x), dim(x), dimnames(x))[]\T1/ptm/m/n/10 , name
ly a ma-trix whose rows each
[682]
Underfull \hbox (badness 2818) in paragraph at lines 47183--47189
[]\T1/ptm/m/n/10 For a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 vec-
tor []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with both []\T1/pcr/m/n/10 FALSE []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 val-ues, []\T1/pcr/m/n/10
 which.min(x) []\T1/ptm/m/n/10 and
[683]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 47218--47218
 []\T1/pcr/m/n/9 ## Find the first occurrence, i.e. the first TRUE, if there is
 at least one:[] 
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Underfull \hbox (badness 2846) in paragraph at lines 47713--47717
[]\T1/pcr/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[691]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 47753--47753
 []\T1/pcr/m/n/9 .packages(all.available = TRUE) # return all available as char
acter vector[] 
Underfull \hbox (badness 3209) in paragraph at lines 47774--47778
[]\T1/pcr/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[692]) (./compiler-pkg.tex
Chapter 2.
[693]
Underfull \hbox (badness 2884) in paragraph at lines 107--121
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 options []\T1/ptm/m/n/10 ar-gu-ment can b
e used to con-trol com-piler op-er-a-tion. There are cur-
Underfull \hbox (badness 10000) in paragraph at lines 107--121
\T1/ptm/m/n/10 rently four op-tions: []\T1/pcr/m/n/10 optimize[]\T1/ptm/m/n/10 
, []\T1/pcr/m/n/10 suppressAll[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressUndef
ined[]\T1/ptm/m/n/10 , and
[694]
[695]
[696]) (./datasets-pkg.tex
Chapter 3.
[697]
[698]
[699]
[700]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 297--297
 []  \T1/pcr/m/n/9 plot(ff, data = anscombe, col = "red", pch = 21, bg = "orang
e", cex = 1.2,[] 
[701]
[702]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 375--375
 []\T1/pcr/m/n/9 coplot(accel ~ dist | as.factor(event), data = attenu, show.gi
ven = FALSE)[] 
[703]
[704]
[705]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 613--613
 []           \T1/pcr/m/n/9 start = c(lrc = log(.35)), algorithm = "plinear", t
race = TRUE)[] 
[706]
[707]
Underfull \hbox (badness 4779) in paragraph at lines 700--703
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[708]
[709]
Underfull \hbox (badness 4779) in paragraph at lines 832--835
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[710]
[711]
Underfull \hbox (badness 1097) in paragraph at lines 1034--1038
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[712]
[713]
Underfull \hbox (badness 4779) in paragraph at lines 1149--1152
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[714]
[715]
[716]
[717]
[718]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1463--1463
 []\T1/pcr/m/n/9 plot(names(te), te, type = "h", main = f.tit, xlab = "Eruption
 time (sec)")[] 
[719]
[720]
Underfull \hbox (badness 10000) in paragraph at lines 1548--1551
[]\T1/ptm/m/n/10 Finally, []\T1/pcr/m/n/10 freeny []\T1/ptm/m/n/10 is a data fr
ame with vari-ables []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lag.q
uarterly.revenue[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2903) in paragraph at lines 1548--1551
[]\T1/pcr/m/n/10 price.index[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 income.level[]\
T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 market.potential []\T1/ptm/m/n/10 ob-taine
d from the above
[721]
[722]
[723]
Underfull \hbox (badness 4779) in paragraph at lines 1737--1740
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[724]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1835--1835
 []\T1/pcr/m/n/9 model1 <- glm(case ~ spontaneous+induced, data = infert, famil
y = binomial())[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1843--1843
 []  \T1/pcr/m/n/9 model3 <- clogit(case ~ spontaneous+induced+strata(stratum),
 data = infert)[] 
[725]
[726]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1960--1960
 []\T1/pcr/m/n/9 ## Iris versicolor "differs twice as much from I. setosa as fr
om I. virginica"[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1965--1965
 []\T1/pcr/m/n/9 ## equivalence of legacy array (iris3) and data.frame (iris) r
epresentation[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1969--1969
 []                                        \T1/pcr/m/n/9 sub(" W.",".Width", dn
i3[[2]])))),[] 
[727]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1970--1970
 []    \T1/pcr/m/n/9 Species = gl(3, 50, labels = sub("S", "s", sub("V", "v", d
ni3[[3]]))))[] 
[728]
[729]
[730]
Underfull \hbox (badness 4779) in paragraph at lines 2173--2176
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[731]
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[733]
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[735]
[736]
[737]
[738]
[739]
Underfull \hbox (badness 4779) in paragraph at lines 2738--2741
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[740]
[741]
[742]
[743]
[744]
[745]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3168--3168
 []\T1/pcr/m/n/9 pairs(quakes, main = "Fiji Earthquakes, N = 1000", cex.main = 
1.2, pch = ".")[] 
[746]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3215--3215
 []\T1/pcr/m/n/9 myrandu <- matrix(NA_real_, 400, 3, dimnames = list(NULL, c("x
","y","z")))[] 
[747]
[748]
[749]
[750]
[751]
Overfull \hbox (47.58038pt too wide) in paragraph at lines 3521--3521
 []\T1/pcr/m/n/9 ## Alaska and Hawaii are placed just off the West Coast (for c
ompact map drawing):[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 3523--3523
 []\T1/pcr/m/n/9 ## state.center2 := version of state.center with "correct" coo
rdinates for AK & HI:[] 
Overfull \hbox (85.38034pt too wide) in paragraph at lines 3524--3524
 []\T1/pcr/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
[752]
Underfull \hbox (badness 1259) in paragraph at lines 3572--3575
\T1/ptm/m/n/10 Av. Cir-cu-laire, 3, B-1180 BRUS-SELS Cur-rently at [][]$\T1/pcr
/m/n/10 https : / / www . sidc . be / SILSO /
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3618--3618
 []\T1/pcr/m/n/9 ## How to recreate the "old" sunspot.month (R <= 3.0.3) =: sun
spot.month.0[] 
[753]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3671--3671
 []\T1/pcr/m/n/9 (t2 <- c(min(  end(sm)[1],end(sy)[1]), 12)) # Dec 1983 (will n
ot be updated!)[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3675--3675
 []          \T1/pcr/m/n/9 ## The yearly series *is* close to the averages of t
he monthly one:[] 
[754] [755]
[756]
Underfull \hbox (badness 4779) in paragraph at lines 3823--3826
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[757]
[758]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 4032--4032
 []       \T1/pcr/m/n/9 xlab = "ToothGrowth data: length vs dose, given type of
 supplement")[] 
[759]
Underfull \hbox (badness 10000) in paragraph at lines 4068--4070
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/pcr/m/n/10 h
ttps : / / web . archive . org / web /
Underfull \hbox (badness 10000) in paragraph at lines 4068--4070
\T1/pcr/m/n/10 20110523225828 / http : / / www . ltrr . arizona . edu / ~hallma
n / sitephotos /
[760]
[761]
[762]
[763]
[764]
[765] [766]
[767]
[768]
[769]
[770]
[771]
[772]
[773]) (./grDevices-pkg.tex
[774]
Chapter 4.
[775]
[776]
[777]
[778]
Underfull \hbox (badness 4752) in paragraph at lines 297--302
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/pcr/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/pcr/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
Underfull \hbox (badness 2865) in paragraph at lines 297--302
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R\T1/pcr/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 
' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack
-age func-tion
[779]
[780]
[781]
[782]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 527--527
 []\T1/pcr/m/n/10 cairo_pdf(filename = if(onefile) "Rplots.pdf" else "Rplot%03d
.pdf",[] 
[783]
[784]
[785]
[786]
[787]
Underfull \hbox (badness 2245) in paragraph at lines 909--914
[]\T1/ptm/m/n/10 Hexadecimal string col-ors can be in the long hex-adec-i-mal f
orm (e.g., []\T1/pcr/m/n/10 "#rrggbb" []\T1/ptm/m/n/10 or
[788]
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 []\T1/pcr/m/n/9 names(clmult) <- sapply(clmult, function(x) paste(crgb[,x[1]],
 collapse = ","))[] 
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 []    \T1/pcr/m/n/9 lattice::cloud(blue ~ red + green, data = as.data.frame(tc
), col = cNms)[] 
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 []\T1/pcr/m/n/9 cNms[isC] # "white" "black" "blue" "cyan" "green" "magenta" "r
ed" "yellow"[] 
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 []   \T1/pcr/m/n/9 plot3d (tc, col = cNms, size = 11) # --> rotate w/ mouse; e
nlarged corners:[] 
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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 []\T1/pcr/m/n/9 zapsmall(lab <- convertColor(cols, from = "sRGB", to = "Lab", 
scale.in = 255))[] 
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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/pcr/m/n/10 c("LinearGradient", "RadialGradient", "TilingPattern")
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[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 dev.print []\T1/ptm/m/n/10 i
s to pro-duce and print a postscript copy. This will not
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\T1/ptm/m/n/10 sys-tem: see [][][]\T1/pcr/m/n/10 postscript[][][] []\T1/ptm/m/n
/10 for how to set this up. Win-dows users may pre-fer to use
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= 72,[] 
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[]\T1/ptm/m/n/10 The types avail-able will de-pend on the ver-sion of []\T1/pcr
/m/n/10 ghostscript[]\T1/ptm/m/n/10 , but are likely to in-
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[]\T1/pcr/m/n/10 "tiffg4"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffgray"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "tifflzw"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffp
ack"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiff12nc"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "tiff24nc"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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ter())[] 
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
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[]\T1/pcr/m/n/10 embedGlyphs() []\T1/ptm/m/n/10 is rec-om-mended for []\T1/pcr/
m/n/10 pdf() []\T1/ptm/m/n/10 files that con-tain type-set glyphs (see
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tGraphicsEventHandlers []\T1/ptm/m/n/10 to re-place
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\T1/ptm/m/n/10 any ex-ist-ing han-dlers in the cur-rent de-vice. This is for co
m-pat-i-bil-ity with pre-2.12.0
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\T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions. The cur-rent nor-mal way to set up e
vent han-dlers is to set them us-ing
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[]\T1/pcr/m/n/10 setGraphicsEventHandlers []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 
setGraphicsEventEnv []\T1/ptm/m/n/10 on one or more graph-ics
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 []\T1/pcr/m/n/9 dragplot <- function(..., xlim = NULL, ylim = NULL, xaxs = "r"
, yaxs = "r") {[] 
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 []\T1/pcr/m/n/10 gray.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE) 
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 []\T1/pcr/m/n/10 grey.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE)[] 
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 = FALSE)[] 
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 []\T1/pcr/m/n/9 zapsmall(luv <- convertColor(cols, from = "sRGB", to = "Luv", 
scale.in = 255))[] 
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 []\T1/pcr/m/n/9 (hex <- convertColor(luv, from = "Luv",  to = hexcolor, scale.
out = NULL))[] 
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[]\T1/pcr/m/n/10 nclass.FD []\T1/ptm/m/n/10 uses the Freedman-Diaconis choice b
ased on the inter-quartile range
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 []\T1/pcr/m/n/10 palette.colors(n = NULL, palette = "Okabe-Ito", alpha, recycl
e = FALSE,[] 
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 []\T1/pcr/m/n/9 (palette(gray(seq(0,.9,length.out = 25)))) # gray scales; prin
t old palette[] 
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 []\T1/pcr/m/n/9 ## Demonstrate the colors 1:8 in different palettes using a cu
stom matplot()[] 
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 []    \T1/pcr/m/n/9 matplot(x, type = "l", lwd = 4, lty = 1, col = 1:n, ylab =
 "", main=main)[] 
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 []\T1/pcr/m/n/9 palROB <- colorRampPalette(c("red", "darkorange2", "blue"), sp
ace = "Lab")[] 
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 []\T1/pcr/m/n/10 hcl.colors(n, palette = "viridis", alpha = NULL, rev = FALSE,
 fixup = TRUE) 
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[]\T1/ptm/m/n/10 the type of palettes to list: []\T1/pcr/m/n/10 "qualitative"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sequential"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 For ex-am-ple, []\T1/pcr/m/n/10 "Dark 3" []\T1/ptm/m/n/10 work
s well for shad-ing points or lines in up to five groups,
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\T1/pcr/m/n/10 wikipedia . org / w / index . php ? title = HCL _ color _ space 
& oldid = 883465135$[][]\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 as `\T1/pcr/m/n/10 "CP1250.enc"\T1/ptm/m/n/10 ' (Cen-tral Eu-r
o-pean), []\T1/pcr/m/n/10 "CP1251.enc"
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\T1/ptm/m/n/10 PostScript fonts fam-i-lies of those names which are in-cluded (
or cloned) in all com-mon
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\T1/ptm/m/n/10 cod-ings (ex-cept []\T1/pcr/m/n/10 "TeXtext"[]\T1/ptm/m/n/10 ) a
gree over that range. Some en-cod-ings are su-per-sets of
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\T1/ptm/m/n/10 ISO-Latin1. How-ever, if ac-cented and spe-cial char-ac-ters do 
not come out as you ex-
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 fonts[]\T1/ptm/m/n/10 ,
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4875 \aliasA{symbol}{plotmath}{symbol}
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, [][]$\T1/pcr/m/n/10 https : / / ww
w . iso . org / standard / 34342 . html$[][]\T1/ptm/m/n/10 . See also
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 []\T1/pcr/m/n/9 ## Not run: dev.print(png, filename = "myplot.png", width = 10
24, height = 768)[] 
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[]\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE[]\T1/ptm/m/n/10 
, give a C in-te-ger for-mat such as
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[][][]\T1/pcr/m/n/10 postscriptFonts[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 Devices[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 check.options[][][]
 []\T1/ptm/m/n/10 which is called from both
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[]\T1/pcr/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Bookman"[]\T1
/ptm/m/n/10 , []\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "He
lvetica"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10 
,
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[]\T1/pcr/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/pc
r/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "URWBookman"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusMon"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusSan" []\T1/ptm/m/n/10 (syn-onym []\T1/p
cr/m/n/10 "URWHelvetica"[]\T1/ptm/m/n/10 ),
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[]\T1/ptm/m/n/10 There are also map-pings for []\T1/pcr/m/n/10 "ComputerModern"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ComputerModernItalic" []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 "Japan1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1HeiMin"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1GothicBBB"[]\T1/ptm/m/n/10 , and []\T1/p
cr/m/n/10 "Japan1Ryumin" []\T1/ptm/m/n/10 for
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[]\T1/pcr/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/p
cr/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
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 []\T1/pcr/m/n/9 ## time ranges in diverse scales:% also in ../../../../tests/r
eg-tests-1c.R[] 
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 []\T1/pcr/m/n/10 quartz.save(file, type = "png", device = dev.cur(), dpi = 100
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[]\T1/ptm/m/n/10 Calling []\T1/pcr/m/n/10 quartz() []\T1/ptm/m/n/10 sets [][][]
\T1/pcr/m/n/10 .Device[][][] []\T1/ptm/m/n/10 to []\T1/pcr/m/n/10 "quartz" []\T
1/ptm/m/n/10 for on-screen de-vices and to
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 []  \T1/pcr/m/n/9 quartzFonts("mono")          # the list(mono = ..) sublist o
f quartzFonts()[] 
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\T1/ptm/m/n/10 play List", [][]$\T1/pcr/m/n/10 https : / / stattech . wordpress
 . fos . auckland . ac . nz / 2015 / 12 / 21 /
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 []\T1/pcr/m/n/9 rgb((0:15)/15, green = 0, blue = 0, names = paste("red", 0:15,
 sep = "."))[] 
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[]\T1/pcr/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
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 []\T1/pcr/m/n/9 p <- persp(x, y, fxy <- outer(x,y), phi = 20, theta = 15, r = 
3, ltheta = -75,[] 
[876]
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 []\T1/pcr/m/n/9 ## now some "horizontal rays" (going from center to very left 
or very right):[] 
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 []    \T1/pcr/m/n/9 lines(trans3d(x=seq(x1, x2, by=0.5), y= -0.7, z = z, pmat 
= p, continuous = CNT),[] 
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 []\T1/pcr/m/n/9 doHor(-10,  0, z = -0.5, col = 2)  # x in [-10, 0] -- to the v
ery left : fine[] 
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 []\T1/pcr/m/n/9 doHor(-.5,  2, z = -0.52,col = 4) # x in [-0.5, 2] only {to th
e right} --> all fine[] 
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 []\T1/pcr/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 continuous=TRUE\TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 ):[] 
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= 12,[] 
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 record[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 rescale[]\T1/ptm/m/n/10
 ,
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[]\T1/pcr/m/n/10 xpinch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 ypinch[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 canvas[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 gamma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 xpos[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 ypos[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 buffered[]\T1/
ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 restoreConsole[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 clickToConfi
rm[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 
fillOddEven []\T1/ptm/m/n/10 and
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e on Windows only)[] 
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[]\T1/ptm/m/n/10 The \T1/phv/m/n/10 R \T1/ptm/m/n/10 func-tion is a wrap-per fo
r two de-vices, one based on Xlib ([][]$\T1/pcr/m/n/10 https : / /
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\T1/pcr/m/n/10 en . wikipedia . org / wiki / Xlib$[][]\T1/ptm/m/n/10 ) and one 
us-ing cairo-graph-ics ([][]$\T1/pcr/m/n/10 https : / / www .
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family)[] 
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/pcr/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
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[]\T1/ptm/m/n/10 Problems with in-cor-rect ren-der-ing of sym-bols (e.g., of []
\T1/pcr/m/n/10 quote(pi) []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 expression(10^degree)[]\T1/ptm/m/n/10 ) have been seen on Linu
x sys-tems which have the Wine
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[]\T1/pcr/m/n/10 type = "Xlib" []\T1/ptm/m/n/10 sup-ports `True-Color', `Pseu-d
o-Color', `GrayScale', []\T1/pcr/m/n/10 StaticGray []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica" []\T1
/ptm/m/n/10 (the de-fault), []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10
 ,
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 []\T1/pcr/m/n/9 op <- options(warn = 2)# ==> warnings would be errors, we supp
ress the one "we know":[] 
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., []\T1/pcr/m/n/10
 number[i] []\T1/ptm/m/n/10 is the mul-ti-plic-ity of
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 []\T1/pcr/m/n/9 xy <- data.frame(x = round(sort(stats::rnorm(100))), y = stats
::rnorm(100))[] 
[895]
[896]) (./graphics-pkg.tex
Chapter 5.
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[]\T1/ptm/m/n/10 For a com-plete list of func-tions with in-di-vid-ual help pag
es, use []\T1/pcr/m/n/10 library(help =
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 []  \T1/pcr/m/n/10 gap.axis <- if(perpendicular(side, las)) 0.25 else 1[] 
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[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 at = NULL[]\T1/ptm/m/n/10 , pretty tick 
mark lo-ca-tions are com-puted in-ter-nally (the same way
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 []\T1/pcr/m/n/9 ## now shrink the window (in x- and y-direction) and observe t
he axis labels drawn[] 
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 []\T1/pcr/m/n/9 axis.Date(3, at = as.integer(as.Date("2023-04-01")), col.axis 
= "darkgreen")[] 
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 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.POSIXct("2022-10-01 00:01:30"), col.ax
is = "orange")[] 
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 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.numeric(as.POSIXct("2022-10-01 00:00:3
0")) + 0.25,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 718--718
 []                \T1/pcr/m/n/9 col.axis = "forestgreen", col = "darkgreen", m
gp = c(3,2,0))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 724--724
 []\T1/pcr/m/n/9 plot(data.frame(HST, y = 1), xaxt = "n", xlab = "Hawaii Standa
rd Time (HST)")[] 
Underfull \hbox (badness 10000) in paragraph at lines 751--755
[]\T1/ptm/m/n/10 numeric vec-tor of length three, de-fault-ing to [][][]\T1/pcr
/m/n/10 par[][][]("xaxp") []\T1/ptm/m/n/10 or
Underfull \hbox (badness 3250) in paragraph at lines 751--755
[][][]\T1/pcr/m/n/10 par[][][]("yaxp") []\T1/ptm/m/n/10 de-pend-ing on the []\T
1/pcr/m/n/10 side []\T1/ptm/m/n/10 ar-gu-ment ([]\T1/pcr/m/n/10 par("xaxp") []\
T1/ptm/m/n/10 if
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 []                 \T1/pcr/m/n/9 axp = c(get_axp(usr.i), n = 3), log = TRUE, n
intLog = 5))[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 875--875
 []        \T1/pcr/m/n/10 add = FALSE, ann = !add && par("ann"), args.legend = 
NULL, ...)[] 
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[911]
Underfull \hbox (badness 10000) in paragraph at lines 1020--1024
[][][]\T1/pcr/m/n/10 plot[][][](..., type = "h")[]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 dotchart[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 hist[][][] []\T1
/ptm/m/n/10 for bars of a \T1/ptm/m/it/10 con-tin-u-ous \T1/ptm/m/n/10 vari-abl
e.
[912]
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 []        \T1/pcr/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1039--1039
 []\T1/pcr/m/n/9 (xt <- xtabs(Freq ~ Survived + Class + Sex, d.Titanic, subset 
= Age=="Adult"))[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 1041--1041
 []\T1/pcr/m/n/9 mosaicplot(xt[,,"Male"], main = "mosaicplot(Freq ~ Class + Sur
vived, *)", color=TRUE)[] 
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Overfull \hbox (31.3804pt too wide) in paragraph at lines 1324--1324
 []\T1/pcr/m/n/9 # *add* notches (somewhat funny here <--> warning "notches .. 
outside hinges"):[] 
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[919]
Underfull \hbox (badness 2503) in paragraph at lines 1486--1495
\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 horizontal []\T1/ptm/m/n/10 is false, and 
[]\T1/pcr/m/n/10 xlim []\T1/ptm/m/n/10 hor-i-zon-tally. []\T1/pcr/m/n/10 xaxt[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yaxt[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3375) in paragraph at lines 1521--1523
[]\T1/ptm/m/n/10 whisker line type (de-fault: []\T1/pcr/m/n/10 "dashed"[]\T1/pt
m/m/n/10 ),
[920]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1593--1593
 []\T1/pcr/m/n/9 boxplot(z,   col.axis = "skyblue3", main = "boxplot(*, col.axi
s=..,main=..)")[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1594--1594
 []\T1/pcr/m/n/9 plot(z[[1]], col.axis = "skyblue3", main =    "plot(*, col.axi
s=..,main=..)")[] 
[921]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1600--1600
 []\T1/pcr/m/n/9 splus <- list(boxwex = 0.4, staplewex = 1, outwex = 1, boxfill
 = "grey40",[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 1601--1601
 []              \T1/pcr/m/n/9 medlwd = 3, medcol = "white", whisklty = 3, outl
ty = 1, outpch = NA)[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1634--1634
 []  \T1/pcr/m/n/10 yaxlabels = NULL, xlim = NULL, ylim = c(0, 1), weights = NU
LL, ...)[] 
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[926]
Underfull \hbox (badness 10000) in paragraph at lines 1907--1913
[][][]\T1/pcr/m/n/10 contourLines[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
filled.contour[][][] []\T1/ptm/m/n/10 for color-filled con-tours, [][][]\T1/pcr
/m/n/10 contourplot[][][] []\T1/ptm/m/n/10 (and
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1927--1927
 []\T1/pcr/m/n/9 contour(x, x, z, ylim = c(-6, 6), nlevels = 20, lty = 2, metho
d = "simple",[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 1939--1939
 []\T1/pcr/m/n/9 contour(z, levels=levs[-c(1,length(levs))], col = 1:5, lwd = 1
:3 *1.5, lty = 1:3)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1955--1955
 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1964--1964
 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
[927]
[928]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2049--2049
 []\T1/pcr/m/n/10 coplot(formula, data, given.values, panel = points, rows, col
umns, 
[929]
[930]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 2178--2178
 []\T1/pcr/m/n/9 coplot(lat ~ long | depth, data = quakes, given.values = given
.depth, rows = 1)[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2183--2183
 []\T1/pcr/m/n/9 coplot(ll.dm, data = quakes, number = c(4, 7), show.given = c(
TRUE, FALSE))[] 
[931]
[932]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 2357--2357
 []\T1/pcr/m/n/10 dotchart(x, labels = NULL, groups = NULL, gdata = NULL, offse
t = 1/8, 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 2358--2358
 []         \T1/pcr/m/n/10 ann = par("ann"), xaxt = par("xaxt"), frame.plot = T
RUE, log = "",[] 
[933]
Underfull \hbox (badness 1430) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/pcr/m/n/10 
"n" []\T1/ptm/m/n/10 to sup-press and see also
[934]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 2469--2469
 []               \T1/pcr/m/n/10 color.palette = function(n) hcl.colors(n, "YlO
rRd", rev = TRUE),[] 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 2471--2471
 []               \T1/pcr/m/n/10 plot.title, plot.axes, key.title, key.axes, ke
y.border = NULL,[] 
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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Underfull \hbox (badness 7273) in paragraph at lines 2564--2568
[][][]\T1/pcr/m/n/10 contour[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 image
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 hcl.colors[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 gray.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 palette[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 contourplot[][][] []\T1/p
tm/m/n/10 and
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[939]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2813--2813
 []\T1/pcr/m/n/9 ## maybe change the desired number of tick marks:  par(lab = c
(mx, my, 7))[] 
[940]
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 []\T1/pcr/m/n/9 plot(8:270, log="xy") ; grid() # at (1, 10, 100); if preferrin
g "all" grid lines:[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2861--2861
 []     \T1/pcr/m/n/10 density = NULL, angle = 45, col = "lightgray", border = 
NULL,[] 
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[942]
Underfull \hbox (badness 1226) in paragraph at lines 2988--2992
\T1/pcr/m/n/10 1)[]\T1/ptm/m/n/10 , they are the rel-a-tive fre-quen-cies []\T1
/pcr/m/n/10 counts/n []\T1/ptm/m/n/10 and in gen-eral sat-isfy
[943]
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 []\T1/pcr/m/n/9 ## Extreme outliers; the "FD" rule would take very large numbe
r of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 breaks\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3045--3045
 []\T1/pcr/m/n/9 length(hh$breaks) ## typically 1 million -- though 1e6 was "a 
suggestion only"[] 
[944]
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[][][]\T1/ptm/m/n/10 graphical pa-ram-e-ters[][][], or ar-gu-ments to [][][]\T1
/pcr/m/n/10 hist.default[][][] []\T1/ptm/m/n/10 such as
[945]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3158--3158
 []\T1/pcr/m/n/9 ## The default fuzz in hist.default()  "kills" this, with a "w
rong" message:[] 
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[947]
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 []\T1/pcr/m/n/9 identifyPch <- function(x, y = NULL, n = length(x), plot = FAL
SE, pch = 19, ...)[] 
Overfull \hbox (79.98035pt too wide) in paragraph at lines 3327--3327
 []        \T1/pcr/m/n/9 ans <- identify(x[!sel], y[!sel], labels = which(!sel)
, n = 1, plot = plot, ...)[] 
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[949]
Underfull \hbox (badness 10000) in paragraph at lines 3469--3474
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 useRaster []\T1/ptm/m/n/10 is not spec-i-f
ied, raster im-ages are used when the
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[][][]\T1/pcr/m/n/10 getOption[][][]("preferRaster") []\T1/ptm/m/n/10 is true, 
the grid is reg-u-lar and ei-ther
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[][][]\T1/pcr/m/n/10 dev.capabilities[][][]("rasterImage")$rasterImage []\T1/pt
m/m/n/10 is []\T1/pcr/m/n/10 "yes" []\T1/ptm/m/n/10 or it is
Overfull \hbox (31.3804pt too wide) in paragraph at lines 3504--3504
 []\T1/pcr/m/n/9 # Visualize as matrix.  Need to transpose matrix and then flip
 it horizontally:[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 3506--3506
 []\T1/pcr/m/n/9 imageM <- function(m, grid = max(dim(m)) <= 25, asp = (nrow(m)
-1)/(ncol(m)-1), ...) {[] 
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 []        \T1/pcr/m/n/9 axis(side, at=at, labels=as.character(j+1L), col="gray
", col.axis=1, ...)[] 
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Overfull \hbox (25.98041pt too wide) in paragraph at lines 3666--3666
 []\T1/pcr/m/n/9 barplot(yhist$counts, axes = FALSE, xlim = c(0, top), space = 
0, horiz = TRUE)[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 3685--3685
 []       \T1/pcr/m/n/10 box.lwd = par("lwd"), box.lty = par("lty"), box.col = 
par("fg"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3689--3689
 []       \T1/pcr/m/n/10 text.font = NULL, merge = do.lines && has.pch, trace =
 FALSE,[] 
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Overfull \hbox (36.7804pt too wide) in paragraph at lines 3874--3874
 []  \T1/pcr/m/n/9 text  (1, y.leg[i] - 0.1, paste("cex=", formatC(cexv[i])), c
ex = 0.8, adj = 0)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3875--3875
 []  \T1/pcr/m/n/9 legend(3, y.leg[i], leg.txt, pch = "sSvV", col = c(1, 3), ce
x = cexv[i])[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3879--3879
 []       \T1/pcr/m/n/9 cex = 1+(-1:2)/8, trace = TRUE)# trace: show computed l
engths & coords[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3889--3889
 []  \T1/pcr/m/n/9 title("legend(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 top\TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 , lty = c(2, -1, 1), pch = c(NA, 3, 4), merge = TRUE)",[] 
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 []                      \T1/pcr/m/n/9 "text(c(3,3),2:3,\"c(rect(...)\")"), adj
 = c(0, 0.3))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3946--3946
 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Filled\TS1/pcr/m/n/9 ' \T1/pc
r/m/n/9 boxes -- see also example(barplot) which may call legend(*, fill=)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3948--3948
 []\T1/pcr/m/n/9 legend("topright", rownames(VADeaths), fill = gray.colors(nrow
(VADeaths)))[] 
Underfull \vbox (badness 10000) has occurred while \output is active
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 3959--3959
 []\T1/pcr/m/n/9 legend("bottomright", paste("sin(", 1:7, "pi * x)"), col = 1:7
, lty = 1:7,[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3974--3974
 []\T1/pcr/m/n/9 legend(.4,1, "sin(c x)", pch = 21, pt.bg = "white", lty = 1, c
ol = "blue")[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3982--3982
 []\T1/pcr/m/n/9 legend("topleft",     "(x,y)", pch=1, title= "topleft, inset =
 .05", inset = .05)[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3984--3984
 []\T1/pcr/m/n/9 legend("topright",    "(x,y)", pch=1, title= "topright, inset 
= .02",inset = .02)[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3992--3992
 []   \T1/pcr/m/n/9 plot(1, type = "n", axes = FALSE, ann = FALSE); title(paste
("text.font =",i))[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4002--4002
 []\T1/pcr/m/n/9 legend("bottomleft", c("This legend", "has", "optimally sized"
, "columns."),[] 
[958]
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[][][]\T1/pcr/m/n/10 lines.formula[][][] []\T1/ptm/m/n/10 for the for-mula meth
od; [][][]\T1/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , par-tic-u-larly for []\
T1/pcr/m/n/10 type %in%
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Overfull \hbox (6.78088pt too wide) in paragraph at lines 4176--4176
 []        \T1/pcr/m/n/10 log = "", ..., add = FALSE, verbose = getOption("verb
ose"))[] 
[961]
[962]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 4330--4330
 []\T1/pcr/m/n/9 nd <- length(dv <- seq(as.Date("1959-02-21"), by = "weeks", le
ngth.out = 100))[] 
[963]
Underfull \hbox (badness 3930) in paragraph at lines 4409--4411
[]\T1/ptm/m/n/10 The mag-ni-fi-ca-tion to be used for axis an-no-ta-tion, as a 
mul-ti-ple of
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Underfull \hbox (badness 1286) in paragraph at lines 4725--4728
[]\T1/ptm/m/n/10 which draws the ti-tle. You may want to spec-ify []\T1/pcr/m/n
/10 oma []\T1/ptm/m/n/10 when chang-ing
Underfull \hbox (badness 3229) in paragraph at lines 4733--4738
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 4829--4829
 []\T1/pcr/m/n/9 pairs(USJudgeRatings, lower.panel = panel.smooth, upper.panel 
= panel.cor,[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4834--4834
 []      \T1/pcr/m/n/9 main = "Lengths and Widths in [log]", line.main=1.5, oma
=c(2,2,3,2))[] 
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[972]
Underfull \hbox (badness 1264) in paragraph at lines 5096--5109
\T1/ptm/m/n/10 func-tions such as [][][]\T1/pcr/m/n/10 plot.default[][][][]\T1/
ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.window[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lines[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 abline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 axis[][][][]\T1/ptm/m/n/10 ,
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[976 </builddir/build/BUILD/R-4.4.3/library/graphics/help/figures/mai.pdf>]
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[977 </builddir/build/BUILD/R-4.4.3/library/graphics/help/figures/oma.pdf>]
[978]
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 []\T1/pcr/m/n/9 c(prof.pilots = 16, lawyers = 11, farmers = 10, salesmen = 9, 
physicians = 9,[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5673--5673
 []  \T1/pcr/m/n/9 mechanics = 6, policemen = 6, managers = 6, engineers = 5, t
eachers = 4,[] 
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[982]
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 []\T1/pcr/m/n/9 points(trans3d(xy[,1], xy[,2], z = 6,          pmat = res), co
l = 2, pch = 16)[] 
[983]
[984]
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 []\T1/pcr/m/n/9 pie(c(Sky = 78, "Sunny side of pyramid" = 17, "Shady side of p
yramid" = 5),[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 6038--6038
 []    \T1/pcr/m/n/9 init.angle = 315, col = c("deepskyblue", "yellow", "yellow
3"), border = FALSE)[] 
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ector ~ factor[] 
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is drawn. For
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R�gles, Libert�, Egalit�, Fraternit�...")[] 
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[]\T1/ptm/m/n/10 The po-si-tions of []\T1/pcr/m/n/10 xlab[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sub []\T1/ptm/m/n/10 a
re []\T1/pcr/m/n/10 line []\T1/ptm/m/n/10 (de-fault for []\T1/pcr/m/n/10 xlab [
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[]\T1/ptm/m/n/10 vectors con-tain-ing the co-or-di-nates of the ver-tices of th
e poly-gon. See
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2, length = 0.1)[] 
[1037]) (./grid-pkg.tex
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Chapter 6.
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[]\T1/ptm/m/n/10 Modification of the view-port (should all be valid ar-gu-ments
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a cir-cle grob (a graph-i-cal ob-ject 
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a frame grob (a graph-i-cal ob-ject de
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[]\T1/ptm/m/n/10 The jus-ti-fi-ca-tion of the glyphs rel-a-tive to the ([]\T1/p
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Can be
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Another pos-si-ble use of []\T1/pcr/m/n/10 grid.group() []\T1/
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[]\T1/pcr/m/n/10 "multiply"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "screen"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "overlay"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "darke
n"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lighten"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 gridCoords []\T1/ptm/m/n/10 a nu-meric ve
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-ject (a list of lists with com-po-nents []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 an
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r-gu-ments above are passed to
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[]\T1/ptm/m/n/10 This func-tion can be used to gen-er-ate a view-port path for 
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[][][]\T1/pcr/m/n/10 viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 push
Viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 popViewport[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
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Chapter 7.
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[][][]\T1/pcr/m/n/10 GroupGenericFunctions[][][] []\T1/ptm/m/n/10 for other in-
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 []\T1/pcr/m/n/9 ## vector.  The next method will always be the default, usuall
y a primitive.[] 
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 []\T1/pcr/m/n/9 ## For arithmetic and one rnum with anything, callNextMethod w
ith no arguments[] 
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 []\T1/pcr/m/n/9 ## Simple examples to illustrate callNextMethod with and witho
ut arguments[] 
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[1169]
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 []\T1/pcr/m/n/9 ## call f() with 2 arguments: callNextMethod passes both to th
e default method[] 
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 []\T1/pcr/m/n/9 ## call f() with 1 argument:  the default "B0" is not passed b
y callNextMethod[] 
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 []\T1/pcr/m/n/9 ## uses the class of the *argument* to consistently select the
 "B0" method[] 
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 []\T1/pcr/m/n/9 ## Although the argument here is numeric, it\TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 s still the "B0" method that\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s called[
] 
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 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i), sum(1:10, 1+1i))) # the "N
umber" method[] 
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 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i, TRUE), c(1:10, 1+1i, TRUE))
) # the default[] 
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/pcr/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/pcr/m/n/10 where =
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[]\T1/ptm/m/n/10 To see the ac-tual ta-ble (an [][][]\T1/pcr/m/n/10 environment
[][][][]\T1/ptm/m/n/10 ) used for meth-ods dis-patch, call
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/pcr/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 Object of class []\T1/pcr/m/n/10 "optionalMethod" []\T1/ptm/m/
n/10 (a union of classes []\T1/pcr/m/n/10 "function" []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/10 removeMethods(f, where = topenv(parent.frame()), all = missin
g(where))[] 
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 []\T1/pcr/m/n/9 ## get the function "myFun" -- throw an error if 0 or > 1 vers
ions visible:[] 
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[]\T1/ptm/m/n/10 Function []\T1/pcr/m/n/10 implicitGeneric() []\T1/ptm/m/n/10 r
e-turns the im-plicit generic ver-sion,
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[]\T1/pcr/m/n/10 setGenericImplicit() []\T1/ptm/m/n/10 turns a generic im-plici
t, []\T1/pcr/m/n/10 prohibitGeneric() []\T1/ptm/m/n/10 pre-vents
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[]\T1/ptm/m/n/10 For a class (or class def-i-ni-tion, see [][][]\T1/pcr/m/n/10 
getClass[][][] []\T1/ptm/m/n/10 and the de-scrip-tion of class
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[]
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[] \T1/pcr/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude =
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[]\T1/pcr/m/n/10 setMethod("plot", c("Pos", "missing"), function(x, y, ...) {
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[]\T1/pcr/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
,
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[]\T1/ptm/m/n/10 A call to [][][]\T1/pcr/m/n/10 selectSuperClasses[][][](cl) []
\T1/ptm/m/n/10 re-turns a list of su-per-classes, sim-i-larly to
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 []\T1/pcr/m/n/10 makeClassRepresentation(name, slots=list(), superClasses=char
acter(), 
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 []                        \T1/pcr/m/n/10 prototype=NULL, package, validity, ac
cess,[] 
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 []\T1/pcr/m/n/10 method.skeleton(generic, signature, file, external = FALSE, w
here) 
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[]\T1/ptm/m/n/10 For ad-di-tional in-for-ma-tion see doc-u-men-ta-tion for the 
im-por-tant steps: ([][][]\T1/pcr/m/n/10 setMethod[][][]()[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 In prin-ci-ple, a generic func-tion could be any func-tion tha
t eval-u-ates a call to
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 []\T1/pcr/m/n/9 f3 <- function(x)UseMethod("f3") # an S3 generic to illustrate
 inheritance[] 
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 []\T1/pcr/m/n/9 stopifnot(identical(abs(y), abs(x))) # (version 2.9.0 or earli
er fails here)[] 
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 []\T1/pcr/m/n/9 ## The S3 method for classA and the closest inherited S3 metho
d for classB[] 
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[]\T1/pcr/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...)
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 $initialize() []\T1/p
tm/m/n/10 is equiv-a-lent to in-vok-ing the method
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[]\T1/ptm/m/n/10 Typically, a spe-cial-ized []\T1/pcr/m/n/10 $initialize() []\T
1/ptm/m/n/10 method car-ries out its own com-pu-ta-tions,
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\T1/ptm/m/n/10 then in-vokes []\T1/pcr/m/n/10 $initFields() []\T1/ptm/m/n/10 to
 per-form stan-dard ini-tial-iza-tion, as shown in the
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[]\T1/ptm/m/n/10 This method is equiv-a-lent to call-ing the gen-er-a-tor func-
tion re-turned by
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[]\T1/ptm/m/n/10 Reference classes can have va-lid-ity meth-ods in the same sen
se as any S4 class (see
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[][][]\T1/pcr/m/n/10 setValidity[][][][]\T1/ptm/m/n/10 ). Such meth-ods are of-
ten a good idea; they will be called by call-ing
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
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 []\T1/pcr/m/n/10 ## Create a new object from the class or use the replacement 
version of as().[] 
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 []\T1/pcr/m/n/9 fit <- lm(sepal ~ Petal.Length + Petal.Width + Species, data =
 datasets::iris)[] 
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 []\T1/pcr/m/n/9 myReg <- setClass("myReg", slots = c(title = "character"), con
tains = "mlm")[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7232 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7235 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7238 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
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[]\T1/pcr/m/n/10 "abs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sign"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "sqrt"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ceiling"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "floor"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trunc"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cummax"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "acosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "asin"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "asinh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "atan"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "atanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "exp"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expm1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "c
os"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "cosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cospi"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "sin"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sinh"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "sinpi"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tan"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanp
i"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 name of the class or (more ef-fi-ciently) the class def-i-ni-t
ion ob-ject (see
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[]\T1/ptm/m/n/10 The typ-i-cal user level func-tion is []\T1/pcr/m/n/10 selectS
uperClasses() []\T1/ptm/m/n/10 which calls
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 []\T1/pcr/m/n/9 selectSuperClasses("C", dropVirtual=TRUE, directOnly=FALSE)# d
itto w/o "Root"[] 
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 []\T1/pcr/m/n/10 setGroupGeneric(name, def= , group=list(), valueClass=charact
er(), 
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 []      \T1/pcr/m/n/10 by = character(), where = topenv(parent.frame()), class
Def =,[] 
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 []\T1/pcr/m/n/9 ## "trackMultiCurve", by making the y, smooth slots into 1-col
umn matrices[] 
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 []  \T1/pcr/m/n/9 setLoadAction(function(ns) assign("myCount", 0, envir = ns),
 "setCount")[] 
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 []\T1/pcr/m/n/9 ## Using a short form for the signature, which matches like fo
rmal arguments[] 
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 []\T1/pcr/m/n/9 ## Define a new generic function to compute the residual degre
es of freedom[] 
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/pcr/m/n/10 https : / / johnmchambers . su .
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[]\T1/ptm/m/n/10 Object of the orig-i-nal class; e.g., []\T1/pcr/m/n/10 "functi
on" []\T1/ptm/m/n/10 for class
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
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[]\T1/pcr/m/n/10 "functionWithTrace" []\T1/ptm/m/n/10 ex-tends []\T1/pcr/m/n/10
 "function"[]\T1/ptm/m/n/10 . Each of the spe-cific classes ex-tends
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[1302]) (./parallel-pkg.tex
Chapter 8.
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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/p
cr/m/n/10 "L\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
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[]\T1/ptm/m/n/10 a vec-tor for []\T1/pcr/m/n/10 clusterApply []\T1/ptm/m/n/10 a
nd []\T1/pcr/m/n/10 clusterApplyLB[]\T1/ptm/m/n/10 , a ma-trix for
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[]\T1/ptm/m/n/10 Two ex-cep-tions: []\T1/pcr/m/n/10 parLapply []\T1/ptm/m/n/10 
has ar-gu-ment []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 not []\T1/pcr/m/n/10 x []\T1
/ptm/m/n/10 for con-sis-tency with [][][]\T1/pcr/m/n/10 lapply[][][][]\T1/ptm/m
/n/10 , and
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
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[]\T1/ptm/m/n/10 Character vec-tor of ad-di-tional ar-gu-ments for []\T1/pcr/m/
n/10 Rscript []\T1/ptm/m/n/10 such as
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[]\T1/pcr/m/n/10 mcfork []\T1/ptm/m/n/10 re-turns an ob-ject of the class []\T1
/pcr/m/n/10 "childProcess" []\T1/ptm/m/n/10 to the mas-ter and of class
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[]\T1/pcr/m/n/10 "masterProcess" []\T1/ptm/m/n/10 to the child: both the classe
s in-herit from class []\T1/pcr/m/n/10 "process"[]\T1/ptm/m/n/10 . If
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 []         \T1/pcr/m/n/10 mc.cleanup = TRUE, mc.allow.recursive = TRUE, affini
ty.list = NULL)[] 
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 []\T1/pcr/m/n/9 mclapply(list(A, A, A), first, mc.preschedule = FALSE, affinit
y.list = affL)[] 
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 []\T1/pcr/m/n/9 # To optimize the overall execution time elements of X are sch
eduled to suitable CPUs[] 
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[]\T1/pcr/m/n/10 mcparallel []\T1/ptm/m/n/10 re-turns an ob-ject of the class [
]\T1/pcr/m/n/10 "parallelJob" []\T1/ptm/m/n/10 which in-her-its from
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[]\T1/ptm/m/n/10 The be-haviour with []\T1/pcr/m/n/10 mc.set.seed = TRUE []\T1/
ptm/m/n/10 is dif-fer-ent only if
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 []\T1/pcr/m/n/9 mccollect(p, wait = FALSE, 10) # will retrieve the result (sin
ce it\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s fast)[] 
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 []                 \T1/pcr/m/n/9 as.integer(runif(N, 1, 12)), as.integer(runif
(N, 1, 28)))[] 
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 []\T1/pcr/m/n/9 system.time(c <- unlist(mclapply(dates, as.POSIXct,  format = 
"%Y-%m-%d")))[] 
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/pcr/m/n/10 
.Random.seed []\T1/ptm/m/n/10 when the
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 nextRNGStream []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 nextRNGSubStream[]\T1/ptm/m/n/10 , a value which can be as-signed to
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[1325]) (./splines-pkg.tex
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Chapter 9.
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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/pcr/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
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 []\T1/pcr/m/n/9 ispl <- polySpline(interpSpline( weight ~ height,  women, bSpl
ine = TRUE))[] 
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[]\T1/ptm/m/n/10 An in-te-ger be-tween 0 and []\T1/pcr/m/n/10 splineOrder(objec
t) - 1 []\T1/ptm/m/n/10 spec-i-fy-ing the
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 []\T1/pcr/m/n/9 Matrix::drop0(zapsmall(6*splineDesign(knots = 1:40, x = 4:37, 
sparse = TRUE)))[] 
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[1340]) (./stats-pkg.tex
Chapter 10.
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[]\T1/pcr/m/n/10 .MFclass() []\T1/ptm/m/n/10 re-turns a char-ac-ter string, one
 of []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ordered"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "factor"[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 (xl <- .getXlevels(terms(mf), mf)) # a list with one entry " $
 Species" with 3 levels:[] 
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 []  \T1/pcr/m/n/9 identical(.getXlevels(terms(mc), mc), xl[0]) # a empty named
 list, as no factors[] 
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 []\T1/pcr/m/n/9 add1(glm.D93, scope = ~outcome*treatment, test = "Rao") ## Pea
rson Chi-square[] 
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 []\T1/pcr/m/n/10 addmargins(A, margin = seq_along(dim(A)), FUN = sum, quiet = 
FALSE) 
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/pcr/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
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 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
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 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
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 []                 \T1/pcr/m/n/9 approx(xn, yn, xout=xout, method=M, rule=R, n
a.rm=na.)$y),[] 
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 []\T1/pcr/m/n/9 (amy <- approx(x, y, xout = x)$y) # warning, can be avoided by
 specifying \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ties=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[
] 
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 []\T1/pcr/m/n/10 ARMAacf(ar = numeric(), ma = numeric(), lag.max = r, pacf = F
ALSE) 
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 []\T1/pcr/m/n/9 lines(ave(breaks, wool, tension, FUN = median), type = "s", co
l = "green")[] 
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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Bartlett test of homo
geneity of
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 []\T1/pcr/m/n/10 pbeta(q, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
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 []\T1/pcr/m/n/10 qbeta(p, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
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Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3674.
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 []\T1/pcr/m/n/9 plot (k, dbinom(k, n, pi/10, log = TRUE), type = "l", ylab = "
log density",[] 
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 []\T1/pcr/m/n/10 Box.test(x, lag = 1, type = c("Box-Pierce", "Ljung-Box"), fit
df = 0) 
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 []\T1/pcr/m/n/10 pcauchy(q, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
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 []\T1/pcr/m/n/10 qcauchy(p, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
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 []\T1/pcr/m/n/9 chisq.test(x, p = p)            #               maybe doubtful
, but is ok![] 
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 []  \T1/pcr/m/n/9 plot(pp, sort(pchisq(rr <- rchisq(n, df = df, ncp = L), df =
 df, ncp = L)),[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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 []\T1/pcr/m/n/10 confint(object, parm, level = 0.95, trace = FALSE, test=c("LR
T", "Rao"), ...)[] 
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 []\T1/pcr/m/n/9 constrOptim(c(-1.2,0.9), fr, grr, ui = rbind(c(-1,0), c(0,-1))
, ci = c(-1,-1))[] 
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 []\T1/pcr/m/n/9 constrOptim(c(.5,0), fr, grr, ui = rbind(c(-1,0), c(1,-1)), ci
 = c(-0.9,0.1))[] 
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 []\T1/pcr/m/n/9 ## using sparse contrasts: % useful, once model.matrix() works
 with these :[] 
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 []\T1/pcr/m/n/10 convolve(x, y, conj = TRUE, type = c("circular", "open", "fil
ter")) 
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter string giv-ing a method for com-put-i
ng co-vari-ances
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\T1/ptm/m/n/10 in the pres-ence of miss-ing val-ues. This must be (an ab-bre-vi
-a-tion of)
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\T1/ptm/m/n/10 one of the strings []\T1/pcr/m/n/10 "everything"[]\T1/ptm/m/n/10
 , []\T1/pcr/m/n/10 "all.obs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "complete.obs"
[]\T1/ptm/m/n/10 ,
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 []         \T1/pcr/m/n/10 exact = NULL, conf.level = 0.95, continuity = FALSE,
 ...)[] 
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 []\T1/pcr/m/n/10 cov.wt(x, wt = rep(1/nrow(x), nrow(x)), cor = FALSE, center =
 TRUE, 
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 []\T1/pcr/m/n/10 decompose(x, type = c("additive", "multiplicative"), filter =
 NULL) 
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 []\T1/pcr/m/n/10 reformulate(termlabels, response = NULL, intercept = TRUE, en
v = parent.frame())[] 
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if a box around the plot should be drawn
, see
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[]\T1/ptm/m/n/10 Objects of class []\T1/pcr/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/pcr/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing 
method
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[]\T1/pcr/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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\T1/ptm/m/n/10 has []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y [
]\T1/ptm/m/n/10 (and op-tional fur-ther ar-gu-ments) as branches. Note that be-
fore \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.1.2,
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[][][]\T1/pcr/m/n/10 dendrapply[][][] []\T1/ptm/m/n/10 for ap-ply-ing a func-ti
on to \T1/ptm/m/it/10 each \T1/ptm/m/n/10 node. [][][]\T1/pcr/m/n/10 order.dend
rogram[][][] []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/9 str(dend1, max.level = 2, last.str =  "\TS1/pcr/m/n/9 '\T1/pcr
/m/n/9 ") # only the first two sub-levels[] 
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 []\T1/pcr/m/n/9 plot(dend2$lower[[3]], nodePar = list(col = 4), horiz = TRUE, 
type = "tr")[] 
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 []\T1/pcr/m/n/9 ## merge() all parts back (using default \TS1/pcr/m/n/9 '\T1/p
cr/m/n/9 height\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 instead of original one):[] 
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 []\T1/pcr/m/n/9 plot(d3, nodePar= nP, edgePar = list(col = "gray", lwd = 2), h
oriz = TRUE)[] 
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 []\T1/pcr/m/n/9 abline(h = 1/1022, v = range(x), lty=2); axis(2, at=1/1022, "1
/(2n-2)", las=1)[] 
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 []                     \T1/pcr/m/n/9 function(k) density(kernel = k, give.Rker
n = TRUE))))[] 
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[]\T1/pcr/m/n/10 "maximum"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "manhattan"[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 "canberra"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "bi
nary" []\T1/ptm/m/n/10 or
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/pcr/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/pcr/m/n/10 ht
tps : / / CRAN . R-[]project . org / view =
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[]\T1/ptm/m/n/10 Each row of the re-sult-ing ma-trix con-sists of se-quences []
\T1/pcr/m/n/10 x[t][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 x[t-1][]\T1/ptm/m/n/10 ,
 ...,
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[]\T1/ptm/m/n/10 Components of []\T1/pcr/m/n/10 control []\T1/ptm/m/n/10 can al
so be sup-plied as named ar-gu-ments to
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 []\T1/pcr/m/n/9 glm.qD93 <- glm(counts ~ outcome + treatment, d.AD, family = q
uasipoisson())[] 
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 []\T1/pcr/m/n/9 ## Not run: glm(y ~ x, family = quasi(variance = "mu^3", link 
= "log")) # fails[] 
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 []\T1/pcr/m/n/9 glm(y ~ x, family = quasi(variance = "mu(1-mu)", link = "logit
"), start = c(0,1))[] 
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 []           \T1/pcr/m/n/9 dimnames = list(income = c("< 15k", "15-25k", "25-4
0k", "> 40k"),[] 
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 []                     \T1/pcr/m/n/9 satisfaction = c("VeryD", "LittleD", "Mod
erateS", "VeryS")))[] 
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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Fligner-Killeen test 
of homogeneity of
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[][][]\T1/pcr/m/n/10 ftable.formula[][][] []\T1/ptm/m/n/10 for the for-mula in-
ter-face (which al-lows a []\T1/pcr/m/n/10 data = . []\T1/ptm/m/n/10 ar-gu-ment
);
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[]\T1/ptm/m/n/10 See also [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or
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 []    \T1/pcr/m/n/10 x = FALSE, y = TRUE, singular.ok = TRUE, contrasts = NULL
, ...)[] 
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 the method to be used in fit-ting the model. The de-fault meth
od
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[]\T1/ptm/m/n/10 A spec-i-fi-ca-tion of the form []\T1/pcr/m/n/10 first:second 
[]\T1/ptm/m/n/10 in-di-cates the set of terms ob-tained by tak-
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[]\T1/ptm/m/n/10 The generic ac-ces-sor func-tions [][][]\T1/pcr/m/n/10 coeffic
ients[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 effects[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 fitted.values []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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[][][]\T1/pcr/m/n/10 glm[][][] []\T1/ptm/m/n/10 for com-put-ing []\T1/pcr/m/n/1
0 glm.obj[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 anova.glm[][][][]\T1/ptm/m/n/1
0 ; the cor-re-spond-ing \T1/ptm/m/it/10 generic \T1/ptm/m/n/10 func-tions,
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[]\T1/pcr/m/n/10 "average" []\T1/ptm/m/n/10 (= UP-GMA), []\T1/pcr/m/n/10 "mcqui
tty" []\T1/ptm/m/n/10 (= WPGMA), []\T1/pcr/m/n/10 "median" []\T1/ptm/m/n/10 (=
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\T1/ptm/m/n/10 There are [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/n/10 , [][
][]\T1/pcr/m/n/10 plot[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 identify []\
T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 identify.hclust[][][][]\T1/ptm/m/n/10 )
 meth-ods and the
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
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 []\T1/pcr/m/n/9 heatmap(Ca, Rowv = FALSE, symm = TRUE, RowSideColors = cc, Col
SideColors = cc,[] 
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0.1),[] 
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[]\T1/ptm/m/n/10 Character string to se-lect an []\T1/pcr/m/n/10 "additive" []\
T1/ptm/m/n/10 (the de-fault) or
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 []\T1/pcr/m/n/9 identify(hci, function(k) barplot(table(iris[k,5]), col = 2:4)
, DEV.FUN = nD)[] 
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
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<to be read again> 
                   \relax 
l.12050 \aliasA{hat}{influence.measures}{hat}
                                             
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12113--12113
 []\T1/pcr/m/n/10 cooks.distance(model, infl = lm.influence(model, do.coef = FA
LSE),[] 
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 12125--12125
 []\T1/pcr/m/n/10 hatvalues(model, infl = lm.influence(model, do.coef = FALSE),
 ...)[] 
Underfull \hbox (badness 1062) in paragraph at lines 12178--12183
[]\T1/ptm/m/n/10 The op-tional []\T1/pcr/m/n/10 infl[]\T1/ptm/m/n/10 , []\T1/pc
r/m/n/10 res []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sd []\T1/ptm/m/n/10 ar-gu-me
nts are there to en-cour-age the use of these di-
Underfull \hbox (badness 1052) in paragraph at lines 12195--12197
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists 
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 12450--12450
 []                 \T1/pcr/m/n/10 type = c("l", "p", "b", "o", "c"), legend = 
TRUE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12451--12451
 []                 \T1/pcr/m/n/10 trace.label = deparse1(substitute(trace.fact
or)),[] 
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Underfull \hbox (badness 10000) in paragraph at lines 12782--12784
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/pcr/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 SSinit =
Underfull \hbox (badness 4739) in paragraph at lines 12805--12807
[]\T1/ptm/m/n/10 the es-ti-mate at time $\OML/cmm/m/it/10 t \OMS/cmsy/m/n/10 ^^
@ \OT1/cmr/m/n/10 1$ \T1/ptm/m/n/10 of the state un-cer-tainty ma-trix $\OML/cm
m/m/it/10 Q$ \T1/ptm/m/n/10 (not up-dated by
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Underfull \hbox (badness 3417) in paragraph at lines 13118--13120
[]\T1/ptm/m/n/10 an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of class []\T1/pcr/
m/n/10 "kmeans"[]\T1/ptm/m/n/10 , typ-i-cally the re-sult []\T1/pcr/m/n/10 ob [
]\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 ob <-
Underfull \hbox (badness 2894) in paragraph at lines 13124--13128
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
Underfull \hbox (badness 1038) in paragraph at lines 13124--13128
\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 "Hartigan-Wong"[]\T1/ptm/m/n/10 ): if pos-i-ti
ve (or true), trac-ing in-for-ma-tion on the
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Underfull \hbox (badness 1496) in paragraph at lines 13552--13558
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
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[1545]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 13807--13807
 []\T1/pcr/m/n/9 lag.plot(sqrt(sunspots), set.lags = c(1:4, 9:12), pch = ".", c
ol = "gold")[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 13907--13907
 []\T1/pcr/m/n/9 dimnames(cAS) <- list(paste("it =", format(1:10)), c("intercep
t", "slope"))[] 
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Underfull \hbox (badness 4518) in paragraph at lines 13955--13960
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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Underfull \hbox (badness 10000) in paragraph at lines 14155--14159
[]\T1/ptm/m/n/10 More []\T1/pcr/m/n/10 lm() []\T1/ptm/m/n/10 ex-am-ples are ava
il-able e.g., in [][][]\T1/pcr/m/n/10 anscombe[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 attitude[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 freeny[][][]
[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 1163) in paragraph at lines 14497--14505
\T1/ptm/m/n/10 els, [][][]\T1/pcr/m/n/10 influence[][][] []\T1/ptm/m/n/10 (etc 
on that page) for re-gres-sion di-ag-nos-tics, [][][]\T1/pcr/m/n/10 weighted.re
siduals[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 4518) in paragraph at lines 14617--14622
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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Overfull \hbox (12.78088pt too wide) in paragraph at lines 14807--14807
 []\T1/pcr/m/n/10 plogis(q, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 14808--14808
 []\T1/pcr/m/n/10 qlogis(p, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
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Overfull \hbox (6.78088pt too wide) in paragraph at lines 15152--15152
 []\T1/pcr/m/n/10 plnorm(q, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 15153--15153
 []\T1/pcr/m/n/10 qlnorm(p, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
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Overfull \hbox (18.78088pt too wide) in paragraph at lines 15246--15246
 []\T1/pcr/m/n/10 lowess(x, y = NULL, f = 2/3, iter = 3, delta = 0.01 * diff(ra
nge(x))) 
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Underfull \hbox (badness 2726) in paragraph at lines 15655--15658
[]\T1/ptm/m/n/10 character; one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cauchit"[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 "cloglog"[]\T1/ptm/m/n/10 ,
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 15749--15749
 []\T1/pcr/m/n/9 stopifnot(all.equal(pfm, pf2)) ## was off (rel.diff. 0.0766) i
n R <= 3.5.0[] 
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Overfull \hbox (31.3804pt too wide) in paragraph at lines 16379--16379
 []\T1/pcr/m/n/9 a <- model.frame(cbind(ncases,ncontrols) ~ agegp + tobgp + alc
gp, data = esoph) 
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Underfull \hbox (badness 1490) in paragraph at lines 16528--16533
\T1/ptm/m/n/10 those spec-i-fied in []\T1/pcr/m/n/10 ... []\T1/ptm/m/n/10 which
 are re-cy-cled to the num-ber of data frame rows. Un-like
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 16564--16564
 []\T1/pcr/m/n/9 model.frame(dist ~ speed, data = cars, subset = speed < 10, z 
= log(dist))[] 
Underfull \hbox (badness 1648) in paragraph at lines 16600--16602
[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
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 []\T1/pcr/m/n/9 model.matrix(~ a + b, dd, contrasts.arg = list(a = "contr.sum"
, b = contr.poly))[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 16686--16686
 []\T1/pcr/m/n/9 m.orth <- model.matrix(~a+b, dd, contrasts.arg = list(a = "con
tr.helmert"))[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 17241--17241
 []\T1/pcr/m/n/9 stopifnot(all(na.omit(1:3) == 1:3))  # does not affect objects
 with no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] 
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Overfull \hbox (25.98041pt too wide) in paragraph at lines 17474--17474
 []\T1/pcr/m/n/9 persp(x, size, dnb <- outer(x, size, function(x,s) dnbinom(x, 
s, prob = 0.4)),[] 
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Underfull \vbox (badness 10000) has occurred while \output is active
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Overfull \hbox (42.18039pt too wide) in paragraph at lines 18194--18194
 []\T1/pcr/m/n/9 ## adjusting the convergence test by adding \TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 scaleOffset\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 to its denominator RSS:[]
 
Underfull \vbox (badness 10000) has occurred while \output is active
[1611]
Overfull \hbox (74.58035pt too wide) in paragraph at lines 18213--18213
 []\T1/pcr/m/n/9 ## Here, requiring close convergence, must use more accurate n
umerical differentiation,[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 18214--18214
 []\T1/pcr/m/n/9 ## as this typically gives Error: "step factor .. reduced belo
w \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 minFactor\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 .."[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 18218--18218
 []\T1/pcr/m/n/9 ## central differencing works here typically (PR#18165: not co
nverging on *some*):[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 18219--18219
 []\T1/pcr/m/n/9 ctr2 <- nls.control(nDcentral=TRUE, tol = 8e-8, # <- even smal
ler than above[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 18222--18222
 []        \T1/pcr/m/n/9 (grepl("^aarch64.*linux", R.version$platform) && grepl
("^NixOS", osVersion)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 18254--18254
 []              \T1/pcr/m/n/9 start = list(a = rep(b[2], 21), b = rep(b[3], 21
), th = b[1]))[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 18430--18430
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData(expression(log(conc)), expression(densi
ty), DNase.2)[] 
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 18477--18477
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 18524--18524
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
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Overfull \hbox (102.78088pt too wide) in paragraph at lines 18741--18741
 []             \T1/pcr/m/n/10 eps = .Machine$double.eps ^ (1/if(central) 3 els
e 2), central = FALSE)[] 
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Underfull \hbox (badness 1248) in paragraph at lines 19060--19063
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 1661) in paragraph at lines 19073--19077
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
Underfull \hbox (badness 1478) in paragraph at lines 19081--19085
\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 control$trace []\T1/ptm/m/n/10 is pos-i-tive
. De-faults to ev-ery 10 it-er-a-tions for []\T1/pcr/m/n/10 "BFGS" []\T1/ptm/m/
n/10 and
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Underfull \hbox (badness 2042) in paragraph at lines 19139--19141
[]\T1/ptm/m/n/10 indicates an er-ror from the []\T1/pcr/m/n/10 "L-BFGS-B" []\T1
/ptm/m/n/10 method; see com-po-nent
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Overfull \hbox (15.18042pt too wide) in paragraph at lines 19245--19245
 []      \T1/pcr/m/n/9 lower = rep(2, 25), upper = rep(4, 25)) # par[24] is *no
t* at boundary[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 19288--19288
 []     \T1/pcr/m/n/9 main = "initial solution of traveling salesman problem", 
axes = FALSE)[] 
Overfull \hbox (123.1803pt too wide) in paragraph at lines 19306--19306
 []\T1/pcr/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 
Overfull \hbox (96.18033pt too wide) in paragraph at lines 19309--19309
 []\T1/pcr/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 19329--19329
 []\T1/pcr/m/n/10 optimize(f, interval, ..., lower = min(interval), upper = max
(interval), 
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Overfull \hbox (36.78088pt too wide) in paragraph at lines 19332--19332
 []\T1/pcr/m/n/10 optimise(f, interval, ..., lower = min(interval), upper = max
(interval),[] 
Underfull \hbox (badness 2564) in paragraph at lines 19367--19378
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 f []\T1/ptm/m/n/10 is never eva
l-u-ated at two points closer to-gether than $\OML/cmm/m/it/10 ^^O$$\OMS/cmsy/m
/n/10 j\OML/cmm/m/it/10 x[]\OMS/cmsy/m/n/10 j \OT1/cmr/m/n/10 + (\OML/cmm/m/it/
10 tol=\OT1/cmr/m/n/10 3)$\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1082) in paragraph at lines 19367--19378
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 ^^O$ \T1/ptm/m/n/10 is ap-prox-i-mately 
[]\T1/pcr/m/n/10 sqrt([][].Machine[][][]$double.eps) []\T1/ptm/m/n/10 and $\OML
/cmm/m/it/10 x[]$ \T1/ptm/m/n/10 is the fi-nal ab-scissa
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 19430--19430
 []\T1/pcr/m/n/9 f  <- function(x) ifelse(x > -1, ifelse(x < 4, exp(-1/abs(x - 
1)), 10), 10)[] 
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 19660--19660
 []\T1/pcr/m/n/9 matplot(p, p.adj, ylab="p.adjust(p, meth)", type = "l", asp = 
1, lty = 1:6,[] 
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Underfull \hbox (badness 1337) in paragraph at lines 19771--19774
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 20089--20089
 []      \T1/pcr/m/n/10 par.fit = list(col = "red", cex = 1.5, pch = 13, lwd = 
1.5),[] 
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Overfull \hbox (24.78088pt too wide) in paragraph at lines 20176--20176
 []       \T1/pcr/m/n/10 expression("Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s dist
 vs Leverage* " * h[ii] / (1 - h[ii]))),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 20178--20178
 []              \T1/pcr/m/n/10 panel.smooth(x, y, iter=iter.smooth, ...) else 
points,[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 20180--20180
 []     \T1/pcr/m/n/10 ask = prod(par("mfcol")) < length(which) && dev.interact
ive(),[] 
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Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/pcr/m/n/10 "bottomleft", legend = "Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s di
stance", lty = cook.lty,
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/pcr/m/n/10 col = cook.col, text.col = cook.col, bty = "n", x.intersp
Underfull \hbox (badness 10000) in paragraph at lines 20248--20254
[]\T1/ptm/m/n/10 the num-ber of ro-bust-ness it-er-a-tions, the ar-gu-ment []\T
1/pcr/m/n/10 iter []\T1/ptm/m/n/10 in
Underfull \hbox (badness 10000) in paragraph at lines 20259--20262
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 1 or 2, to be used in []\T1/pcr/m
/n/10 ylim <-
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 20526--20526
 []\T1/pcr/m/n/9 nlmod <- nls(y ~  Const + A * exp(B * x), start=list(Const=100
, A=10, B=1))[] 
[1647]
[1648]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 20657--20657
 []                    \T1/pcr/m/n/10 main = NULL, ci.col = "blue", ci.lty = 3,
 ...)[] 
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Underfull \hbox (badness 1194) in paragraph at lines 20667--20670
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1650]
Underfull \hbox (badness 1107) in paragraph at lines 20725--20727
[]\T1/ptm/m/n/10 numeric vec-tor of ab-scissa val-ues at which to eval-u-ate []
\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . De-faults to
Overfull \hbox (20.58041pt too wide) in paragraph at lines 20780--20780
 []\T1/pcr/m/n/9 plot(sfun.2);plot(sfun.2, xval = tt, add = TRUE, col = "orange
") # all colors[] 
[1651]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 20787--20787
 []\T1/pcr/m/n/9 legend(2.5, 1.9, paste("f =", c(0, 0.2, 1)), col = 1:3, lty = 
1, y.intersp = 1)[] 
[1652]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 20881--20881
 []\T1/pcr/m/n/9 title("plot(ts(..), axes=FALSE, ann=FALSE, frame.plot=TRUE, ma
r..., oma...)")[] 
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[1654]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 21009--21009
 []    \T1/pcr/m/n/9 ppois(10*(15:25), lambda = 100, lower.tail = FALSE)  # no 
cancellation[] 
[1655]
Underfull \hbox (badness 7740) in paragraph at lines 21072--21074
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 "Comparison of
[1656]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 21120--21120
 []\T1/pcr/m/n/10 poly(x, ..., degree = 1, coefs = NULL, raw = FALSE, simple = 
FALSE) 
Underfull \hbox (badness 10000) in paragraph at lines 21176--21178
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 poly(*, simple=TRUE)[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 polym(*, coefs=<non-NULL>)[]\T1/ptm/m/n/10 , and
[1657]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 21213--21213
 [] \T1/pcr/m/n/9 zm <- zapsmall(polym (    1:4, c(1, 4:6),  degree = 3)) # or 
just poly():[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 21218--21218
 []\T1/pcr/m/n/9 ## poly(<matrix>, df) --- used to fail till July 14 (vive la F
rance!), 2017:[] 
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Overfull \hbox (58.38037pt too wide) in paragraph at lines 22072--22072
 []          \T1/pcr/m/n/9 all.equal(pz3$sdev, pZ$sdev, tolerance = 1e-15)) # e
xactly equal typically[] 
[1671]
Underfull \hbox (badness 6859) in paragraph at lines 22139--22146
[][][]\T1/pcr/m/n/10 predict.glm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
redict.lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.loess[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.nls[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 predict.poly[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 22150--22156
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/pcr/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
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 []        \T1/pcr/m/n/10 rankdeficient = c("warnif", "simple", "non-estim", "N
A", "NAwarn"),[] 
Underfull \hbox (badness 10000) in paragraph at lines 22464--22467
[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string
 spec-i-fy-ing what should hap-pen in the
Underfull \hbox (badness 10000) in paragraph at lines 22464--22467
\T1/ptm/m/n/10 case of a rank de-fi-cient model, i.e., when []\T1/pcr/m/n/10 ob
ject$rank <
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Underfull \hbox (badness 5832) in paragraph at lines 22469--22474
\T1/ptm/m/n/10 cases, i.e., vec-tors not in the same pre-dic-tor sub-space as t
he
Underfull \hbox (badness 8151) in paragraph at lines 22469--22474
\T1/ptm/m/n/10 orig-i-nal data (with tol-er-ance []\T1/pcr/m/n/10 tol[]\T1/ptm/
m/n/10 ). In that case, the non-
Underfull \hbox (badness 1184) in paragraph at lines 22469--22474
\T1/ptm/m/n/10 estimable in-dices are also re-turned as at-tribute []\T1/pcr/m/
n/10 "non-estim" []\T1/ptm/m/n/10 (see
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Overfull \hbox (48.78088pt too wide) in paragraph at lines 22937--22937
 []         \T1/pcr/m/n/10 subset = rep_len(TRUE, nrow(as.matrix(x))), fix_sign
 = TRUE, ...)[] 
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[1688]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 23221--23221
 []             \T1/pcr/m/n/10 has.Pvalue = nc >= 4L && length(cn <- colnames(x
)) &&[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 23222--23222
 []                          \T1/pcr/m/n/10 substr(cn[nc], 1L, 3L) %in% c("Pr("
, "p-v"),[] 
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Underfull \hbox (badness 1337) in paragraph at lines 23626--23632
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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Overfull \hbox (15.18042pt too wide) in paragraph at lines 23938--23938
 []\T1/pcr/m/n/9 with(d, qqplot(Female, Male, pch = 19, xlim = c(-31, 31), ylim
 = c(-31, 31),[] 
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[1702]
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Underfull \hbox (badness 10000) in paragraph at lines 24251--24253
[]\T1/ptm/m/n/10 Wicklin, R. (2017) Sam-ple quan-tiles: A com-par-i-son of 9 de
f-i-ni-tions;
Underfull \hbox (badness 10000) in paragraph at lines 24251--24253
\T1/ptm/m/n/10 SAS Blog. [][]$\T1/pcr/m/n/10 https : / / blogs . sas . com / co
ntent / iml / 2017 / 05 / 24 /
Underfull \hbox (badness 10000) in paragraph at lines 24254--24255
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _
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[1706]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 24365--24365
 []       \T1/pcr/m/n/10 method = c("non.compact", "row.compact", "col.compact"
, "compact"),[] 
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Underfull \hbox (badness 1028) in paragraph at lines 24423--24426
[]\T1/ptm/m/n/10 further ar-gu-ments to be passed to or from meth-ods; for []\T
1/pcr/m/n/10 write() []\T1/ptm/m/n/10 and
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Underfull \hbox (badness 10000) in paragraph at lines 24538--24541
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
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[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 reorder[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
[1710]
Underfull \hbox (badness 7099) in paragraph at lines 24657--24659
[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 relevel[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
[1711]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 24692--24692
 []\T1/pcr/m/n/9 bymedianR <- with(InsectSprays, reorder(spray, count, median, 
decreasing=TRUE))[] 
[1712]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 24768--24768
 []\T1/pcr/m/n/9 plot(reorder(dd, 10:1, agglo.FUN = mean), main = "reorder(dd, 
10:1, mean)")[] 
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[1714]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 24885--24885
 []\T1/pcr/m/n/10 #         varying = ___,  # list / matrix / vector (use with 
care)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 24886--24886
 []\T1/pcr/m/n/10 #         v.names = ___,  # vector of variable names in long 
format[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 24887--24887
 []\T1/pcr/m/n/10 #         timevar, times, # name / values of constructed time
 variable[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 24888--24888
 []\T1/pcr/m/n/10 #         idvar, ids)     # name / values of constructed id v
ariable[] 
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[1716]
Underfull \hbox (badness 10000) in paragraph at lines 25045--25050
[][][]\T1/pcr/m/n/10 stack[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 aperm[]
[][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 relist[][][] []\T1/ptm/m/n/10 for r
e-shap-ing the re-sult of [][][]\T1/pcr/m/n/10 unlist[][][][]\T1/ptm/m/n/10 . [
][][]\T1/pcr/m/n/10 xtabs[][][] []\T1/ptm/m/n/10 and
Underfull \hbox (badness 2495) in paragraph at lines 25045--25050
[][][]\T1/pcr/m/n/10 as.data.frame.table[][][] []\T1/ptm/m/n/10 for cre-at-ing 
con-tin-gency ta-bles and con-vert-ing them back to
[1717]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 25056--25056
 []\T1/pcr/m/n/9 ## long to wide (direction = "wide") requires idvar and timeva
r at a minimum[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 25057--25057
 []\T1/pcr/m/n/9 reshape(Indometh, direction = "wide", idvar = "Subject", timev
ar = "time")[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 25076--25076
 []\T1/pcr/m/n/9 reshape(df, timevar = "visit", idvar = "id", direction = "wide
", v.names = "x")[] 
[1718]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 25181--25181
 []       \T1/pcr/m/n/10 na.action = c("+Big_alternate", "-Big_alternate", "na.
omit", "fail"),[] 
[1719]
Underfull \hbox (badness 1033) in paragraph at lines 25224--25230
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
Underfull \hbox (badness 10000) in paragraph at lines 25245--25248
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/pcr/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/pcr/m/n/10 y[j] =
[1720]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 25323--25323
 []\T1/pcr/m/n/9 plot(myNHT, type = "b", ylim = c(48, 60), main = "Running Medi
ans Example")[] 
[1721]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 25349--25349
 []\T1/pcr/m/n/9 ## An example with initial NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s -
 used to fail badly (notably for "Turlach"):[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 25361--25361
 []\T1/pcr/m/n/9 matplot(y = cbind(x15, rT15), type = "b", ylim = c(1,9), pch=1
:5, xlab = NA,[] 
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[1726]
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[1728]
Underfull \hbox (badness 6268) in paragraph at lines 25820--25825
[][][]\T1/pcr/m/n/10 SSasympOrig[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 S
Sbiexp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfol[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 SSfpl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSgo
mpertz[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSlogis[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 SSmicmen[][][][]\T1/ptm/m/n/10 ,
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[1731]
[1732]
Underfull \hbox (badness 1867) in paragraph at lines 26030--26032
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to
Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
[]\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 PP
Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
\T1/pcr/m/n/10 <- sum(!is.na([][]coef[][][](object))) []\T1/ptm/m/n/10 -- where
 in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was
Overfull \hbox (20.58041pt too wide) in paragraph at lines 26088--26088
 []\T1/pcr/m/n/9 sigma(lm1) # ~= 7.165  = "Residual standard error"  printed fr
om summary(lm1)[] 
[1733]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 26095--26095
 []\T1/pcr/m/n/9 stopifnot(all.equal(sigma(fm.DN1), summary(fm.DN1)$sigma, tole
rance=1e-15))[] 
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[1735]
Underfull \hbox (badness 2495) in paragraph at lines 26277--26286
[]\T1/ptm/m/n/10 For an in-verse gaus-sian GLM the model as-sumed is $\OML/cmm/
m/it/10 IG\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 ^^V[]; ^^Uw[]\OT1/cmr/m/n/10 )$ \T1
/ptm/m/n/10 (see [][]$\T1/pcr/m/n/10 https : / / en .
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[1737]
[1738]
Underfull \hbox (badness 2197) in paragraph at lines 26423--26426
[]\T1/pcr/m/n/10 psmirnov []\T1/ptm/m/n/10 gives the dis-tri-bu-tion func-tion,
 []\T1/pcr/m/n/10 qsmirnov []\T1/ptm/m/n/10 gives the quan-tile func-tion, and
Overfull \hbox (24.78088pt too wide) in paragraph at lines 26443--26443
 []       \T1/pcr/m/n/10 twiceit = FALSE, endrule = c("Tukey", "copy"), do.ends
 = FALSE)[] 
Underfull \hbox (badness 1412) in paragraph at lines 26450--26452
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing the kind of smoother re-qui
red; de-faults to
[1739]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 26535--26535
 []\T1/pcr/m/n/9 matlines(cbind(smooth(x, "3R"), smooth(x, "S"), smooth(x, "3RS
S"), smooth(x)))[] 
[1740]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 26560--26560
 []\T1/pcr/m/n/10 smooth.spline(x, y = NULL, w = NULL, df, spar = NULL, lambda 
= NULL, cv = FALSE, 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 26563--26563
 []              \T1/pcr/m/n/10 control.spar = list(), tol = 1e-6 * IQR(x), kee
p.stuff = FALSE)[] 
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[1743]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 26788--26788
 []    \T1/pcr/m/n/10 nx <- length(x) - sum(duplicated( round((x - mean(x)) / t
ol) ))[] 
Underfull \hbox (badness 2547) in paragraph at lines 26792--26798
[]\T1/ptm/m/n/10 The de-fault []\T1/pcr/m/n/10 all.knots = FALSE []\T1/ptm/m/n/
10 and []\T1/pcr/m/n/10 nknots = .nknots.smspl[]\T1/ptm/m/n/10 , en-tails us-in
g only
Overfull \hbox (4.38043pt too wide) in paragraph at lines 26839--26839
 []\T1/pcr/m/n/9 plot(dist ~ speed, data = cars, main = "data(cars)  &  smoothi
ng splines")[] 
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Overfull \hbox (47.58038pt too wide) in paragraph at lines 26860--26860
 []\T1/pcr/m/n/9 with(cars.spl$fit, min + range * knot[-c(1:3, nk+1 +1:3)]) # =
= unique(cars$speed)[] 
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 27052--27052
 []\T1/pcr/m/n/10 spec.ar(x, n.freq, order = NULL, plot = TRUE, na.action = na.
fail, 
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Underfull \hbox (badness 10000) in paragraph at lines 27317--27322
\T1/ptm/m/n/10 This makes the spec-tral den-sity a den-sity over the range []\T
1/pcr/m/n/10 (-frequency(x)/2,
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[1753]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 27431--27431
 []          \T1/pcr/m/n/10 method = c("fmm", "periodic", "natural", "monoH.FC"
, "hyman"),[] 
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[1755]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 27613--27613
 []\T1/pcr/m/n/9 set.seed(8); x <- sort(round(rnorm(30), 1)); y <- round(sin(pi
 * x) + rnorm(30)/10, 3)[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 27619--27619
 []\T1/pcr/m/n/9 plot(x, y, main = "spline(x,y, ties=list(\"ordered\", mean))  
for when x has ties")[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 27628--27628
 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "monoH.FC")(x), add = TRUE, c
ol = 3, n = 1001)[] 
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 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "hyman")   (x), add = TRUE, c
ol = 4, n = 1001)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[1756]
Underfull \hbox (badness 2922) in paragraph at lines 27698--27703
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1757]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 27735--27735
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5.2), xlim
 = c(-.3, 5),[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 27738--27738
 []                    \T1/pcr/m/n/9 {f[phi](x) == phi[1] + (phi[2]-phi[1])*~e^
{-e^{phi[3]}*~x}}))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 27747--27747
 []         \T1/pcr/m/n/9 c(0  ,  1   ), 1, length = 0.08, angle = 25); text(0.
5, 1, quote(1))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 27748--27748
 []  \T1/pcr/m/n/9 y0 <- 1 + 4*exp(-3/4) ; t.5 <- log(2) / exp(-3/4) ; AR2 <- 3
 # (Asym + R0)/2[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 27752--27752
 []  \T1/pcr/m/n/9 axis(2, at = c(1,AR2,5), labels= expression(phi[2], frac(phi
[1]+phi[2],2), phi[1]),[] 
[1758]
Underfull \hbox (badness 3240) in paragraph at lines 27806--27809
[][][]\T1/pcr/m/n/10 nls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 selfStart
[][][][]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 example(SSasympOff) []\T1/ptm/m/n/10 
gives graph show-ing the []\T1/pcr/m/n/10 SSasympOff
[1759]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 27827--27827
 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOff(xx, Asym = 5, lrc = log(
0.4), c0 = 3/4)) )[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27830--27830
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(-.5,6), xlim
 = c(-1, 8),[] 
[1760]
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 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOrig(xx, Asym = 5, lrc = log
(log(2)))) )[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27917--27917
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5), xlim =
 c(-1/4, 5),[] 
Overfull \hbox (58.38037pt too wide) in paragraph at lines 27927--27927
 []  \T1/pcr/m/n/9 axis(2, at = 5*c(1/2,1), labels= expression(frac(phi[1],2), 
phi[1]), pos=0, las=1)[] 
Overfull \hbox (106.98032pt too wide) in paragraph at lines 27932--27932
 []       \T1/pcr/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1761]
Underfull \hbox (badness 2922) in paragraph at lines 27968--27974
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27990--27990
 []\T1/pcr/m/n/9 print(getInitial(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), dat
a = Indo.1),[] 
[1762]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 28006--28006
 []  \T1/pcr/m/n/9 legend("topright", c("y1+y2", "y1 = 3.5 * exp(-4*x)", "y2 = 
1.5 * exp(-x)"),[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 28020--28020
 []\T1/pcr/m/n/9 ## Fails by default (scaleOffset=0) on most platforms {also af
ter increasing maxiter !}[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 28022--28022
 []        \T1/pcr/m/n/9 nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, trace=TRUE)[] 
Overfull \hbox (128.58029pt too wide) in paragraph at lines 28028--28028
 []            \T1/pcr/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 
[1763]
[1764]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 28139--28139
 []\T1/pcr/m/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input) - exp(-exp(lK
a)*input)) 
[1765]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1766]
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 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "A", phi[2] == "B", phi[3] == "xm
id", phi[4] == "scal")))[] 
Underfull \hbox (badness 2922) in paragraph at lines 28288--28293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1767]
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 []\T1/pcr/m/n/9 lines(x, do.call(SSgompertz, c(list(x=x), coef(fm1))), col = "
red", lwd=2)[] 
Underfull \hbox (badness 2922) in paragraph at lines 28353--28358
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1768]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 28378--28378
 []\T1/pcr/m/n/9 ## Initial values are in fact the converged one here, "Number 
of iter...: 0" :[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 28382--28382
 []\T1/pcr/m/n/9 fm2 <- update(fm1, control=nls.control(tol = 1e-9, warnOnly=TR
UE), trace = TRUE)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28402--28402
 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "Asym", phi[2] == "xmid", phi[3] 
== "scal")))[] 
[1769]
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 []  \T1/pcr/m/n/9 segments(c(2,2.6,2.6), c(0,  2.5,3.5),   # NB.  SSlogis(x = 
xmid = 2) = 2.5[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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micmen model")[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 x[]\
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a = Chick.6)[] 
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 []\T1/pcr/m/n/9 fm1 <- nls(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
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l() fit to Chick.6")[] 
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 []\T1/pcr/m/n/9 As <- coef(fm1)[["Asym"]]; abline(v = 0, h = c(As, As - coef(f
m1)[["Drop"]]), lty = 3)[] 
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[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.glm"[]\T1/ptm/m/
n/10 , usu-ally, a re-sult of a call to
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
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[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.nls"[]\T1/ptm/m/
n/10 , usu-ally the re-sult of a call to
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
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[]\T1/ptm/m/n/10 character vec-tor, one shorter than (the \T1/ptm/m/it/10 aug-m
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
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main = t.tit,[] 
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mon",[] 
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pan.smth = 1/4)[] 
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- nrow)[] 
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 toeplitz(x, *)[]\T1/ptm/m/n/10 : the firs
t col-umn of the Toeplitz ma-trix; for
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.) {also warning}:[] 
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 []   \T1/pcr/m/n/9 colnames(W) <- paste0(",", if(n <= 9) 1:n else c(1:9, lette
rs[seq_len(n-9)]))[] 
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 []\T1/pcr/m/n/9 y.hat <- W. %*% y # y.hat := smoothed(y) ("mass preserving" ->
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 []\T1/pcr/m/n/9 plot(x,y, type="b", xlim=c(1,m)); curve(f(x), 1,n, col="gray",
 lty=2, add=TRUE)[] 
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else "ts",[] 
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[]\T1/pcr/m/n/10 is.mts(x) []\T1/ptm/m/n/10 tests if an ob-ject []\T1/pcr/m/n/1
0 x []\T1/ptm/m/n/10 is a mul-ti-vari-ate time se-ries, i.e., ful-fills []\T1/p
cr/m/n/10 is.ts(x)[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/10 ptukey(q, nmeans, df, nranges = 1, lower.tail = TRUE, log.p =
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v = FALSE,[] 
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s: --------------[] 
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 []\T1/pcr/m/n/9 ## where as  \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 extendInt="yes"\TS1
/pcr/m/n/9 '  \T1/pcr/m/n/9 simply first enlarges the search interval:[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
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t compute exact p-value with ties[] 
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# same ties as (4:2, 3:1)[] 
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ALSE)[] 
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[1844]) (./stats4-pkg.tex
Chapter 11.
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, log = TRUE))[] 
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er to 0 and 1[] 
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Chapter 12.
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llback ref in here[] 
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[]\T1/pcr/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
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 []\T1/pcr/m/n/9 eval.txt <- function() eval(str2lang(tclvalue(tkget(txt.w, "0.
0", "end"))))[] 
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[][][]\T1/pcr/m/n/10 select.list[][][] []\T1/ptm/m/n/10 (a text ver-sion ex-cep
t on Win-dows and the ma-cOS GUI), [][][]\T1/pcr/m/n/10 menu[][][] []\T1/ptm/m/
n/10 (whose
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Chapter 13.
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 []\T1/pcr/m/n/9 ## is used for simple print methods in R, and as prototype for
 new methods.[] 
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[]\T1/pcr/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12
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\T1/ptm/m/n/10 types of bib-li-o-graphic en-try sup-ported by [][][]\T1/pcr/m/n
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\T1/ptm/m/n/10 tines de-scribed be-low. The for-mer must be named []\T1/pcr/m/n
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[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
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\T1/ptm/m/n/10 by \T1/pcr/m/n/10 \donttest\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \dont
diff \T1/ptm/m/n/10 or \T1/pcr/m/n/10 \dontshow\T1/ptm/m/n/10 , and \T1/pcr/m/n
/10 \title \T1/ptm/m/n/10 re-placed by \T1/pcr/m/n/10 \section \T1/ptm/m/n/10 o
r
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mpress == "none")[] 
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
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[]\T1/pcr/m/n/10 check_packages_in_dir []\T1/ptm/m/n/10 re-turns an ob-ject in-
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[]\T1/pcr/m/n/10 codocClasses []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 codocData [
]\T1/ptm/m/n/10 re-turn ob-jects of class []\T1/pcr/m/n/10 "codocClasses" []\T1
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[]\T1/pcr/m/n/10 CRAN_package_db() []\T1/ptm/m/n/10 re-turns a data frame with 
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' meta-data for the cu
r-rent pack-ages in the CRAN pack-age repos-i-
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\T1/ptm/m/n/10 tory, in-clud-ing in par-tic-u-lar the De-scrip-tion and Main-ta
iner in-for-ma-tion not pro-vided by
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/pcr/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
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\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 loadPkgRdMacros []\T1/ptm/m/n/10 func-tio
n first looks for an []\T1/pcr/m/n/10 "RdMacros" []\T1/ptm/m/n/10 en-try in the
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[]\T1/ptm/m/n/10 Package main-tain-ers can use these func-tions to em-ploy user
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0 R\T1/ptm/m/n/10 's mech-a-nisms (in par-tic-u-lar, cus-tom com-
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\T1/ptm/m/n/10 pi-la-tions in sub-di-rec-to-ries of `\T1/pcr/m/n/10 src\T1/ptm/
m/n/10 '), e.g., by adding con-fig-ure code call-ing \T1/phv/m/n/10 R \T1/ptm/m
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[]\T1/pcr/m/n/10 matchConcordance []\T1/ptm/m/n/10 con-verts from out-put lo-ca
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[]\T1/ptm/m/n/10 The de-fault method of []\T1/pcr/m/n/10 as.Rconcordance []\T1/
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\T1/ptm/m/n/10 trans-for-ma-tion records a con-cor-dance in the file which is r
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 []\T1/pcr/m/n/10 package_dependencies(packages = NULL, db = NULL, which = "str
ong", 
[1915]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests",
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\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor,
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 []\T1/pcr/m/n/9 myPkgs <- c("MASS", "Matrix", "KernSmooth", "class", "cluster"
, "codetools")[] 
[1916]
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 []    \T1/pcr/m/n/10 align = TRUE, character_only = TRUE, include_declarations
 = TRUE)[] 
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 []  \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macros", "system
.Rd"),[] 
[1921]
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion 3.2.0, User-d
efined macros may be given in a sep-a-rate file us-ing
[1922]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3042--3042
 []         \T1/pcr/m/n/10 stylesheet = file.path(R.home("doc"), "html", "R-nav
.css"),[] 
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 []         \T1/pcr/m/n/10 hooks = list(pkg_href = function(pkg) sprintf("%s.ht
ml", pkg)),[] 
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 []         \T1/pcr/m/n/10 mathjax_config = file.path(R.home("doc"), "html", "m
athjax-config.js"),[] 
[1923]
[1924]
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 3310--3310
 []\T1/pcr/m/n/10 checkDocFiles   (package, dir, lib.loc = NULL, chkInternal = 
NULL) 
[1926]
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 []\T1/pcr/m/n/10 checkRdContents (package, dir, lib.loc = NULL, chkInternal = 
NULL)[] 
[1927]
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[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-
tor of links, as re-turned by
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 []             \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macro
s", "system.Rd"))[] 
Underfull \hbox (badness 5417) in paragraph at lines 3889--3899
[]\T1/ptm/m/n/10 By de-fault, the tags \T1/pcr/m/n/10 \S3method\T1/ptm/m/n/10 ,
 \T1/pcr/m/n/10 \S4method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \command\T1/ptm/m/n/10
 , \T1/pcr/m/n/10 \docType\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \email\T1/ptm/m/n/10 
,
[1935]
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[1937]
Underfull \hbox (badness 4108) in paragraph at lines 4103--4110
[]\T1/ptm/m/n/10 This func-tion starts the in-ter-nal HTTP server, which runs o
n the loop-back in-ter-face
[1938]
[1939]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4204--4204
 []                      \T1/pcr/m/n/10 types = c("examples", "tests", "vignett
es"),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 4207--4207
 []\T1/pcr/m/n/10 testInstalledBasic(scope = c("basic", "devel", "both", "inter
net", "all"),[] 
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1940]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4287--4287
 []\T1/pcr/m/n/9 (prio <- sapply(as.vector(pNms), packageDescription, fields = 
"Priority"))[] 
[1941]
[1942]
Underfull \hbox (badness 7832) in paragraph at lines 4388--4391
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/pcr/m/n/10 texi2dvi []\T1/ptm/m/n/10 5
.0 and later; []\T1/pcr/m/n/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-ti
on
[1943]
[1944]
[1945]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4623--4623
 []  \T1/pcr/m/n/10 "mac.binary", "win.binary"), verbose.level = as.integer(dry
run),[] 
[1946]
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[1948]
Underfull \hbox (badness 10000) in paragraph at lines 4807--4810
[]\T1/ptm/m/n/10 optional char-ac-ter strings for the `[]\T1/pcr/m/n/10 Copyrig
ht[]\T1/ptm/m/n/10 ' and
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[]\T1/ptm/m/n/10 All ex-ist-ing files in di-rec-tory []\T1/pcr/m/n/10 po []\T1/
ptm/m/n/10 with names `\T1/pcr/m/n/10 R-\T1/ptm/m/sl/10 lang\T1/pcr/m/n/10 .po\
T1/ptm/m/n/10 ' are up-dated from
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/pcr/m/n/10 po
/\T1/ptm/m/sl/10 pkgname\T1/pcr/m/n/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. T
he
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in t
he pack-age are ex-am-ined to cre-ate a file
[1949]
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[1952]
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[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 vignetteEngine[][][][]\T1/ptm/m/n/10 
, such as []\T1/pcr/m/n/10 "utils::Sweave" []\T1/ptm/m/n/10 or
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5094--5094
 []               \T1/pcr/m/n/10 verbose = FALSE, unpacked = FALSE, subdirs = F
ALSE,[] 
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 []               \T1/pcr/m/n/10 latestOnly = TRUE, addFiles = FALSE, rds_compr
ess = "xz",[] 
[1953]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/10 ',
Underfull \hbox (badness 1742) in paragraph at lines 5112--5122
[]\T1/pcr/m/n/10 "Package"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Version"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Priority"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Depe
nds"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Imports"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1127) in paragraph at lines 5150--5156
[]\T1/pcr/m/n/10 write_PACKAGES []\T1/ptm/m/n/10 scans the named di-rec-tory fo
r R pack-ages, ex-tracts in-for-ma-tion from
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\T1/ptm/m/n/10 each pack-age's `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file
, and writes this in-for-ma-tion into the `\T1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/1
0 ',
[1954]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
Underfull \hbox (badness 2772) in paragraph at lines 5204--5209
\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 PACKAGES.gz\T1/ptm/m/n/10 ' files. See [][][
]\T1/pcr/m/n/10 update_PACKAGES[][][] []\T1/ptm/m/n/10 for ef-fi-ciently up-dat
-ing ex-ist-ing
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 5342--5342
 []  \T1/pcr/m/n/9 "    stop(errorCondition(gettext(\TS1/pcr/m/n/9 '\T1/pcr/m/n
/9 needs Deep Thought\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), class=\TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 myError\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ))",[] 
[1957]) (./utils-pkg.tex
[1958]
Chapter 14.
Underfull \hbox (badness 1072) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
[1959]
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 []\T1/pcr/m/n/9 find("cor", numeric = TRUE)                     # numbers with
 these names[] 
[1963]
[1964]
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\T1/ptm/m/n/10 are []\T1/pcr/m/n/10 c("vertical", "horizontal", "cascade", "min
imize",
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 of win-dow 
han-dles, by de-fault pro-duced by
[1965]
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 []\T1/pcr/m/n/9 # This default is useful only in SDI mode:  it will tile any F
irefox window[] 
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 []\T1/pcr/m/n/9 .arrangeWindowsDefaults <- list(c("R", "all"), pattern = c("",
 "Firefox"))[] 
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 []         \T1/pcr/m/n/10 prompts = getOption("askYesNo", gettext(c("Yes", "No
", "Cancel"))),[] 
[1966]
[1967]
[1968]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 691--691
 []\T1/pcr/m/n/10 aspell_package_R_files(dir, ignore = character(), control = l
ist(),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 692--692
 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 693--693
 []\T1/pcr/m/n/10 aspell_package_C_files(dir, ignore = character(), control = l
ist(),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 694--694
 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
[1969]
Underfull \hbox (badness 10000) in paragraph at lines 728--734
[]\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 aspell_package_Rd_files[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 4416) in paragraph at lines 728--734
[]\T1/pcr/m/n/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 a
spell_package_C_files []\T1/ptm/m/n/10 per-form spell check-
[1970]
[1971]
Underfull \hbox (badness 1552) in paragraph at lines 927--933
[]\T1/ptm/m/n/10 A char-ac-ter ma-trix with one row per pack-age, row names the
 pack-age names and col-
[1972]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 954--954
 []\T1/pcr/m/n/9 db <- available.packages(repos = findCRANmirror("web"), filter
s = "duplicates")[] 
[1973]
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 []\T1/pcr/m/n/10 bibentry(bibtype, textVersion = NULL, header = NULL, footer =
 NULL, 
[1974]
Underfull \hbox (badness 7649) in paragraph at lines 1130--1136
[][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if Bib-TeX co
de should be given ad-di-tion-ally;
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\T1/ptm/m/n/10 cur-rently ap-plies only to []\T1/pcr/m/n/10 style = "citation"[
]\T1/ptm/m/n/10 . The de-fault for
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\T1/ptm/m/n/10 the []\T1/pcr/m/n/10 print() []\T1/ptm/m/n/10 method de-pends on
 the num-ber of (bib) en-tries and
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\T1/ptm/m/n/10 For ex-am-ple, to see no Bib-TeX at all, you can change the de-f
ault by
[1975]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1976]
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[]\T1/ptm/m/n/10 The DOI ([][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Digital _ Object _
[1977]
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 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
[1978]
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[1983]
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[]\T1/ptm/m/n/10 For ex-am-ple, sup-pose that on a data set which you know to b
e quite large the com-
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\T1/ptm/m/n/10 mand []\T1/pcr/m/n/10 data.frame(x, y, z, monday, tuesday) []\T1
/ptm/m/n/10 never re-turns. Do not re-port that
[1984]
[1985]
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 []                                     \T1/pcr/m/n/9 data = infert, family = b
inomial())))[] 
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 []     \T1/pcr/m/n/10 md5sum = FALSE, digest = NULL, full.names = length(path)
 > 1,[] 
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 []\T1/pcr/m/n/10 changedFiles(before, after, path = before$path, timestamp = b
efore$timestamp,[] 
[1986]
[1987]
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 []\T1/pcr/m/n/9 snapshot <- fileSnapshot(dir, timestamp = tempfile("timestamp"
), md5sum=TRUE)[] 
[1988]
Underfull \hbox (badness 2277) in paragraph at lines 2104--2109
[]\T1/pcr/m/n/10 charClass []\T1/ptm/m/n/10 was added in \T1/phv/m/n/10 R \T1/p
tm/m/n/10 4.1.0. A less di-rect way to ex-am-ine char-ac-ter classes
[1989]
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 []\T1/pcr/m/n/9 cl <- c("alnum", "alpha", "blank", "digit", "graph", "punct", 
"upper", "xdigit")[] 
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 []\T1/pcr/m/n/9 X <- as.data.frame(X); row.names(X) <- sQuote(intToUtf8(x, mul
tiple = TRUE))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2146--2146
 []\T1/pcr/m/n/9 ## How many printable characters are there? (Around 280,000 in
 Unicode 13.)[] 
[1990]
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 []\T1/pcr/m/n/10 chooseBioCmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1992]
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 []\T1/pcr/m/n/10 chooseCRANmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1993]
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[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/pcr/m/n/10 citation() []\T1/
ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print
Underfull \hbox (badness 1400) in paragraph at lines 2461--2468
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
[1994]
[1995]
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 []\T1/pcr/m/n/10 citeNatbib(keys, bib, textual = FALSE, before = NULL, after =
 NULL,[] 
[1996]
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 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
[1997]
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 []\T1/pcr/m/n/10 citEntry(entry, textVersion = NULL, header = NULL, footer = N
ULL, ...) 
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[][][]\T1/pcr/m/n/10 citation[][][] []\T1/ptm/m/n/10 for more in-for-ma-tion ab
out cit-ing R and R pack-ages and `\T1/pcr/m/n/10 CITATION\T1/ptm/m/n/10 ' file
s;
[1998]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
                                                  
Underfull \hbox (badness 1163) in paragraph at lines 2769--2771
[]\T1/ptm/m/n/10 The Win-dows clip-board of-fers data in a num-ber of for-mats:
 see e.g. [][]$\T1/pcr/m/n/10 https : / / docs .
[1999]
[2000]
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[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
[2001]
[2002]
[2003]
Underfull \hbox (badness 10000) in paragraph at lines 3083--3085
[]\T1/ptm/m/n/10 character string, in-di-cat-ing which type of pack-ages: see
[2004]
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[2007]
Underfull \hbox (badness 1762) in paragraph at lines 3376--3379
[]\T1/ptm/m/n/10 To just look in the `\T1/pcr/m/n/10 data\T1/ptm/m/n/10 ' di-re
c-tory of the cur-rent work-ing di-rec-tory, set []\T1/pcr/m/n/10 package =
[2008]
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 []\T1/pcr/m/n/9 try(data(package = "rpart"), silent = TRUE) # list the data se
ts in the rpart package[] 
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 []\T1/pcr/m/n/9 data(USArrests, "VADeaths")    # load the data sets \TS1/pcr/m
/n/9 '\T1/pcr/m/n/9 USArrests\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and \TS1/pcr/m/n/9 
'\T1/pcr/m/n/9 VADeaths\TS1/pcr/m/n/9 '[] 
[2009]
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[]\T1/ptm/m/n/10 The data en-try win-dow re-sponds to X re-sources of class []\
T1/pcr/m/n/10 R_dataentry[]\T1/ptm/m/n/10 . Re-sources
[2010]
[2011]
[2012]
[2013]
[2014]
[2015]
[2016]
Overfull \hbox (74.58035pt too wide) in paragraph at lines 3967--3967
 []  \T1/pcr/m/n/9 DLL.version(file.path(R.home(), "library/stats/libs", .Platf
orm$r_arch, "stats.dll"))[] 
[2017]
Underfull \hbox (badness 4779) in paragraph at lines 4048--4053
[]\T1/ptm/m/n/10 Support for method []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10
 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[2018]
Underfull \hbox (badness 1072) in paragraph at lines 4111--4115
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/pcr/m/n/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
Underfull \hbox (badness 7238) in paragraph at lines 4167--4172
[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 "curl" []\T1/ptm/m/n/10 meth-ods, prox-ies can be set \T1/ptm/m/it/1
0 via \T1/ptm/m/n/10 the en-vi-ron-
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\T1/ptm/m/n/10 ment vari-ables []\T1/pcr/m/n/10 http_proxy []\T1/ptm/m/n/10 or 
[]\T1/pcr/m/n/10 ftp_proxy[]\T1/ptm/m/n/10 . See [][]$\T1/pcr/m/n/10 https : / 
/ curl . se / libcurl / c /
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\T1/ptm/m/n/10 string con-tain-ing `[]\T1/pcr/m/n/10 "Schannel"[]\T1/ptm/m/n/10
 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-
[2019]
[2020]
Underfull \hbox (badness 4660) in paragraph at lines 4308--4311
\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 do
wnload.file[][][] []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 Data frame columns are co-erced on in-put to \T1/ptm/m/it/10 c
har-ac-ter \T1/ptm/m/n/10 un-less nu-meric (in the sense of
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 []        \T1/pcr/m/n/10 character.only = FALSE, give.lines = FALSE, local = F
ALSE,[] 
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\T1/ptm/m/n/10 is saved, then ini-tial-ized to a spec-i-fied state, the ex-am-p
le is run and
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\T1/ptm/m/n/10 the (saved) state is re-stored. []\T1/pcr/m/n/10 setRNG = TRUE [
]\T1/ptm/m/n/10 sets the same state as
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[]\T1/pcr/m/n/10 R CMD [][]check[][][] []\T1/ptm/m/n/10 does for run-ning a pac
k-age's ex-am-ples. This is cur-
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\T1/ptm/m/n/10 rently equiv-a-lent to []\T1/pcr/m/n/10 setRNG = {RNGkind("defau
lt", "default",
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[]\T1/ptm/m/n/10 logical (or []\T1/pcr/m/n/10 "default"[]\T1/ptm/m/n/10 ) in-di
-cat-ing if [][][]\T1/pcr/m/n/10 devAskNewPage[][][](ask = TRUE)
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[]\T1/ptm/m/n/10 An en-try in []\T1/pcr/m/n/10 getOption("repos") []\T1/ptm/m/n
/10 named `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' which is not the de-fault
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 []\T1/pcr/m/n/9 # Set a breakpoint in both copies of that function, assuming o
ne is in the[] 
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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 []\T1/pcr/m/n/10 ## NB: The methods for \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 data.f
rame\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 and \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 array\
TS1/pcr/m/n/10 '  \T1/pcr/m/n/10 are identical to the \TS1/pcr/m/n/10 '\T1/pcr/
m/n/10 matrix\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 one[] 
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 []\T1/pcr/m/n/10 tail(x, n = 6L, keepnums = TRUE, addrownums, ...) # exported 
as tail.matrix()[] 
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 []    \T1/pcr/m/n/9 ## BUT if I use "useAttrib(.)", this is *not* ok, when n i
s of length 2:[] 
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 []    \T1/pcr/m/n/9 ## --- because [i,j]-indexing of data frames *also* drops 
"other" attributes ..[] 
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 [] \T1/pcr/m/n/9 ## -> nicely formatted pdf -- including math formula -- for h
elp(dgamma):[] 
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[]\T1/ptm/m/n/10 The post-ing guide ([][]$\T1/pcr/m/n/10 https : / / www . r-[]
project . org / posting-[]guide . html$[][]\T1/ptm/m/n/10 ), also
[2055]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-
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\T1/ptm/m/n/10 dex, `\T1/ptm/m/sl/10 R_DOC_DIR\T1/pcr/m/n/10 /html/packages.htm
l\T1/ptm/m/n/10 ', which can be re-made by
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/pcr/m/n/10 hsearch_db() []\T1/ptm/m/n/10 builds and caches the help searc
h database for sub-se-quent use by
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
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[]\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 means to use []\T1/pcr/m/n/10 c("Depends
", "Imports", "LinkingTo",
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\T1/pcr/m/n/10 "Suggests") []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pkgs []\T1/ptm
/m/n/10 and []\T1/pcr/m/n/10 c("Depends", "Imports",
Underfull \hbox (badness 1270) in paragraph at lines 7239--7246
\T1/pcr/m/n/10 "LinkingTo") []\T1/ptm/m/n/10 for added de-pen-den-cies: this in
-stalls all the pack-ages
Underfull \hbox (badness 1270) in paragraph at lines 7254--7264
\T1/ptm/m/n/10 for the `[]\T1/pcr/m/n/10 --configure-args[]\T1/ptm/m/n/10 ' fla
g in the call to []\T1/pcr/m/n/10 R CMD INSTALL[]\T1/ptm/m/n/10 . If
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed to []\T1/pcr/m/n/10 R
Underfull \hbox (badness 4913) in paragraph at lines 7297--7301
\T1/pcr/m/n/10 CMD INSTALL []\T1/ptm/m/n/10 for a source pack-age in-stall. E.g
., []\T1/pcr/m/n/10 c("--html",
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\T1/pcr/m/n/10 "--no-multiarch", "--no-test-load") []\T1/ptm/m/n/10 or, for ma-
cOS,
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
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[]\T1/ptm/m/n/10 further ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 downl
oad.file[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/pcr/m/n
/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages
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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/pcr/m/n/10 type = "source" []\T1/pt
m/m/n/10 al-ways works pro-vided the pack-age con-tains no
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[]\T1/pcr/m/n/10 install.packages []\T1/ptm/m/n/10 needs to be able to com-pute
 all the de-pen-den-cies of []\T1/pcr/m/n/10 pkgs []\T1/ptm/m/n/10 from
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[][][]\T1/pcr/m/n/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pac
kages[][][][]\T1/ptm/m/n/10 ,
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 []  \T1/pcr/m/n/9 configure.args = c(RNetCDF = "--with-netcdf-include=/usr/inc
lude/udunits2"))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
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[]\T1/pcr/m/n/10 installed.packages []\T1/ptm/m/n/10 scans the `\T1/pcr/m/n/10 
DESCRIPTION\T1/ptm/m/n/10 ' files of each pack-age found along
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 7668--7668
 []\T1/pcr/m/n/9 plic <- installed.packages(.Library, priority = "high", fields
 = "License")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7673--7673
 []\T1/pcr/m/n/9 ## Keep packages that come with R (priority="high") and all ot
hers separate![] 
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[]\T1/ptm/m/n/10 The ac-tual link-ing com-mand is con-structed by the ver-sion 
of []\T1/pcr/m/n/10 libtool []\T1/ptm/m/n/10 in-stalled at
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 []\T1/pcr/m/n/9 ls.str(mode = "list")   #- what are the structured objects I h
ave defined?[] 
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 []\T1/pcr/m/n/10 make.socket(host = "localhost", port, fail = TRUE, server = F
ALSE) 
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[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
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 []   \T1/pcr/m/n/10 methods(generic.function, class, all.names = FALSE, dropPa
th = FALSE)[] 
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 []                                    \T1/pcr/m/n/10 all.names = FALSE, dropPa
th = FALSE)[] 
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[]\T1/ptm/m/n/10 a sym-bol or char-ac-ter string nam-ing a class: only used if
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/pcr/m/n/10 methods(..)[]\T1/ptm
/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
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[]\T1/ptm/m/n/10 logical spec-i-fy-ing that the news should be opened in the br
owser (by
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Overfull \hbox (25.98041pt too wide) in paragraph at lines 8631--8631
 []\T1/pcr/m/n/9 db4 <- news(Version == "4.0.0" & grepl("^BUG", Category) & gre
pl("PR#", Text),[] 
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 []\T1/pcr/m/n/9 ## News from a date range (\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Matri
x\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 is there in a regular R installation):[] 
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 []\T1/pcr/m/n/9 ## Which categories have been in use? % R-core maybe should st
andardize a bit more[] 
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[]\T1/pcr/m/n/10 "B"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "KiB"[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 "MiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "GiB"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "TiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "PiB"[]\T1/ptm/m/
n/10 ,
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[]\T1/ptm/m/n/10 For all stan-dards, []\T1/pcr/m/n/10 units = "auto" []\T1/ptm/
m/n/10 is also al-lowed. If []\T1/pcr/m/n/10 standard =
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[]\T1/ptm/m/n/10 optionally a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/
n/10 string with an en-cod-ing for an op-tional
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tion", "Built"),[] 
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%d/%y"),[] 
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ields=date.fields))[] 
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 asDateBuilt()[]\T1/ptm/m/n/10 , a [][][]\
T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string as from
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[]\T1/pcr/m/n/10 packageVersion() []\T1/ptm/m/n/10 is a con-ve-nience short-cut
, al-low-ing things like []\T1/pcr/m/n/10 if
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[]\T1/ptm/m/n/10 If a `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the 
given pack-age is found and can suc-cess-fully be read,
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 []          \T1/pcr/m/n/9 identical(pu, packageDate("stats"))) # as "utils" an
d "stats" are[] 
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 []                                   \T1/pcr/m/n/9 # both \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 base R\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and "Built" at same time[] 
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("ok", "upgrade",
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("installed", "not
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 []       \T1/pcr/m/n/10 include = c("given", "family", "email", "role", "comme
nt"),[] 
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 []       \T1/pcr/m/n/10 braces = list(given = "", family = "", email = c("<", 
">"),[] 
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 []         \T1/pcr/m/n/9 "S original, <http://statwww.epfl.ch/davison/BMA/libr
ary.html>"),[] 
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to
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 []         \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", "
no.loss"),[] 
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 []\T1/pcr/m/n/9 dd <- read.DIF(file.path(udir, "exDIF.dif"), header = TRUE, tr
anspose = TRUE)[] 
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 []\T1/pcr/m/n/9 read.fwf(ff, widths = list(c(1,0, 2,3), c(2,2,2))) #> 1 NA 23 
456 98 76 54[] 
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 []           \T1/pcr/m/n/10 row.names, col.names, as.is = !stringsAsFactors, t
ryLogical = TRUE,[] 
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 []           \T1/pcr/m/n/10 skip = 0, check.names = TRUE, fill = !blank.lines.
skip,[] 
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 []           \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, ski
pNul = FALSE)[] 
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[]\T1/ptm/m/n/10 Using []\T1/pcr/m/n/10 row.names = NULL []\T1/ptm/m/n/10 force
s row num-ber-ing. Miss-ing or []\T1/pcr/m/n/10 NULL
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 de-ter-m
in-ing if columns con-sist-ing en-tirely of []\T1/pcr/m/n/10 "F"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "FALSE"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "TRUE" []\T1/pt
m/m/n/10 should be con-verted to [][][]\T1/pcr/m/n/10 logical[][][][]\T1/ptm/m/
n/10 ; passed to
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 []\T1/pcr/m/n/10 readRegistry(key, hive = c("HLM", "HCR", "HCU", "HU", "HCC", 
"HPD"), 
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 []             \T1/pcr/m/n/10 maxdepth = 1, view = c("default", "32-bit", "64-
bit"))[] 
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are
Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 HKEY_CLASSES_ROOT[]\T1/ptm/m/n/10 .
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[]\T1/pcr/m/n/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_USER
S[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_CURRENT_CONFIG
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 []        \T1/pcr/m/n/10 ipar <- list(mean = c(0, 1), vcov = c bind(c(1, 1), c
(1, 0))) 
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[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2024). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
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[][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / w / index . php ? title 
= Roman _ numerals & oldid =
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ng for the last.[] 
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 []\T1/pcr/m/n/9 ## simple consistency checks -- arithmetic when result is in  
{1,2,..,4999} :[] 
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[]\T1/ptm/m/n/10 The chap-ter on ``Tidy-ing and pro-fil-ing R code'' in `Writ-i
ng R Ex-ten-sions':
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[]\T1/ptm/m/n/10 If `[]\T1/pcr/m/n/10 --default-packages[]\T1/ptm/m/n/10 ' is n
ot used, then []\T1/pcr/m/n/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-me
nt vari-
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\T1/ptm/m/n/10 able []\T1/pcr/m/n/10 R_SCRIPT_DEFAULT_PACKAGES[]\T1/ptm/m/n/10 
. If this is set, then it takes prece-dence over
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aphics,stats -e \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 sessionInfo()\TS1/pcr/m/n/9 '[] 
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nettes"),[] 
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ubject",[] 
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scending"),[] 
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\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 score[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 date:
late []\T1/ptm/m/n/10 for sort-ing by date with lat-est re-sults first,
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\T1/ptm/m/n/10 der, []\T1/pcr/m/n/10 subject:descending []\T1/ptm/m/n/10 for re
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Rfunctions"))[] 
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[]\T1/ptm/m/n/10 Character string spec-i-fy-ing whether emacs style ([]\T1/pcr/
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / www . gnu . org / software /
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ALSE, ...)[] 
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[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 stylepath []\T1/ptm/m/n/10 i
s now taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 The use of fancy quotes (see [][][]\T1/pcr/m/n/10 sQuote[][][]
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[]\T1/ptm/m/n/10 The file `\T1/pcr/m/n/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ures
 the R GUI ([]\T1/pcr/m/n/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows
 and
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[]\T1/ptm/m/n/10 At the time of writ-ing `\T1/pcr/m/n/10 Rdevga\T1/ptm/m/n/10 '
 con-fig-ured the map-ping of font num-bers to fonts, and
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[]\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in
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[]\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in
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end of report[] 
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[]\T1/ptm/m/n/10 Repository `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' is treated
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fix)) 
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
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[]\T1/pcr/m/n/10 getSrcFilename []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 getSrcDir
ectory []\T1/ptm/m/n/10 re-turn char-ac-ter vec-tors hold-ing the file-
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ive
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[][][]\T1/pcr/m/n/10 options[][][]("width")[]\T1/ptm/m/n/10 ; note that this ha
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[]\T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 options[][][][]\T1/ptm/m/n/10 ) whic
h de-faults to []\T1/pcr/m/n/10 "no" []\T1/ptm/m/n/10 for back com-pat-i-bil-it
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lt, de-ter-min-ing the []\T1/pcr/m/n/10 nlines []\T1/ptm/m/n/10 ar-gu-ment to
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ng" non-ASCII:[] 
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[]\T1/ptm/m/n/10 The chap-ter on `Tidy-ing and pro-fil-ing R code' in `Writ-ing
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[]\T1/ptm/m/n/10 further ar-gu-ments passed to the driver's setup func-tion. Se
e
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[][][]\T1/pcr/m/n/10 RweaveLatexSetup[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/
m/n/10 RtangleSetup[][][][]\T1/ptm/m/n/10 , re-spec-tively, for the ar-gu-
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fau
lt) then the avail-able syn-tax ob-jects are con-sulted in
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\T1/ptm/m/n/10 turn, and se-lected if their []\T1/pcr/m/n/10 extension []\T1/pt
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\T1/ptm/m/n/10 name. Ob-jects []\T1/pcr/m/n/10 SweaveSyntaxNoweb []\T1/ptm/m/n/
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\T1/ptm/m/n/10 si-bly use-ful val-ues in-clude `[]\T1/pcr/m/n/10 -h[]\T1/ptm/m/
n/10 ' (fol-low sym-bolic links, also `[]\T1/pcr/m/n/10 -L[]\T1/ptm/m/n/10 ' on
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\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 --acls[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --
exclude-backups[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --exclude-vcs[]\T1/ptm/m/n
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[]\T1/ptm/m/n/10 A con-ve-nient and ro-bust way to set op-tions for GNU []\T1/p
cr/m/n/10 tar []\T1/ptm/m/n/10 is via en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 is set t
o the com-mand []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment 
vari-able
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / pubs .
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\T1/pcr/m/n/10 opengroup . org / onlinepubs / 9699919799 / utilities / pax . ht
ml # tag _ 20 _ 92 _
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[]\T1/ptm/m/n/10 Download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
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m/n/10 which makes an in-ter-nal call to
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[]\T1/ptm/m/n/10 Arguments such as []\T1/pcr/m/n/10 destdir []\T1/ptm/m/n/10 an
d []\T1/pcr/m/n/10 dependencies []\T1/ptm/m/n/10 to be
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[]\T1/pcr/m/n/10 max_repo_cache_age []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 noCac
he []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 available.packages[][][]
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
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[]\T1/pcr/m/n/10 available = NULL []\T1/ptm/m/n/10 make a call to []\T1/pcr/m/n
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[]\T1/ptm/m/n/10 Take care when us-ing []\T1/pcr/m/n/10 dependencies []\T1/ptm/
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 with
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[][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pa
ckages[][][][]\T1/ptm/m/n/10 ,
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csb/ch3a.txt") 
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[][][]\T1/pcr/m/n/10 browseVignettes[][][] []\T1/ptm/m/n/10 for an HTML-based v
i-gnette browser; [][][]\T1/pcr/m/n/10 RShowDoc[][][]("\T1/ptm/m/sl/10 basename
\T1/pcr/m/n/10 ",
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/m/n/9 ' \T1/pcr/m/n/9 is much faster in the case of many installed packages:[]
 
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ata = DAT)))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the ac-tion when that menu i
s se-lected, or
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 winMenuDel []\T1/ptm/m/n/10 func-tion wil
l delete a menu and all of its items and sub-menus.
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[]\T1/ptm/m/n/10 arguments to []\T1/pcr/m/n/10 write.table[]\T1/ptm/m/n/10 : []
\T1/pcr/m/n/10 append[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 col.names[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 sep[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dec []\T1/ptm/m/n
/10 and
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tion e.g. []\T1/pcr/m/n/10 file =
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[2200] (./KernSmooth-pkg.tex
Chapter 15.
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 []\T1/pcr/m/n/10 bkde2D(x, bandwidth, gridsize = c(51L, 51L), range.x, truncat
e = TRUE) 
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 []\T1/pcr/m/n/10 dpill(x, y, blockmax = 5, divisor = 20, trim = 0.01, proptrun
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[2210]) (./MASS-pkg.tex
Chapter 16.
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 []\T1/pcr/m/n/9 dreg <- cbind(sin = sin(2*pi*beav2$hours/24), cos = cos(2*pi*b
eav2$hours/24))[] 
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.g
lm}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1477 ...{confint.glm}{confint-MASS}{confint.glm}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.n
ls}) has been already used, duplicate ignored
<to be read again> 
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l.1478 ...{confint.nls}{confint-MASS}{confint.nls}
                                                  
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 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", 
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 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", 
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[]\T1/ptm/m/n/10 further ar-gu-ments for []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10
 and graph-i-cal pa-ram-e-ters. Note that
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[]\T1/pcr/m/n/10 "gamma"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "geometric"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "log-normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lo
gnormal"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "negative binomi
al"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "Poisson"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
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 []            \T1/pcr/m/n/10 eps.max = .Machine$double.eps^0.25, verbose = FAL
SE, ...)[] 
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 []\T1/pcr/m/n/9 survreg(Surv(time, cens) ~ factor(pair) + treat, gehan, dist =
 "exponential")[] 
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[]\T1/ptm/m/n/10 The va-ri-ety of bar-ley ([]\T1/pcr/m/n/10 "manchuria"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "svansota"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "velv
et"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trebi" []\T1/ptm/m/n/10 and
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 []        \T1/pcr/m/n/10 col = 5, xlab = deparse(substitute(data)), bty = "n",
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 []\T1/pcr/m/n/10 lm.ridge(formula, data, subset, na.action, lambda = 0, model 
= FALSE, 
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 []\T1/pcr/m/n/10 mvrnorm(n = 1, mu, Sigma, tol = 1e-6, empirical = FALSE, EISP
ACK = FALSE) 
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 []\T1/pcr/m/n/10 negative.binomial(theta = stop("\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 theta\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 must be specified"), link = "log") 
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                   \relax 
l.6080 ...sical N, P, K Factorial Experiment}{npk}
                                                  
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 []     \T1/pcr/m/n/9 start = list(fixed=c(L75=c(48.7, -0.03), lsc=0.24)), verb
ose = TRUE)))[] 
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 []     \T1/pcr/m/n/10 dimen, abbrev = FALSE, ..., cex=0.7, type = c("std", "tr
ellis"))[] 
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 []     \T1/pcr/m/n/10 method = c("logistic", "probit", "loglog", "cloglog", "c
auchit"))[] 
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[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
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 []\T1/pcr/m/n/9 house.plr <- polr(Sat ~ Infl + Type + Cont, weights = Freq, da
ta = housing)[] 
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[]\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than 
[]\T1/pcr/m/n/10 min(p,
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 []\T1/pcr/m/n/9 fm <- lqs(stack.loss ~ ., data = stackloss, method = "S", nsam
p = "exact")[] 
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 []        \T1/pcr/m/n/10 method = c("plug-in", "predictive", "debiased", "looC
V"), ...)[] 
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l.7508 ... for Profiling glm Objects}{profile.glm}
                                                  
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
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 []    \T1/pcr/m/n/10 maxit = 20, acc = 1e-4, test.vec = "resid", lqs.control =
 NULL)[] 
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[]\T1/ptm/m/n/10 A func-tion to spec-ify the ac-tion to be taken if []\T1/pcr/m
/n/10 NA[]\T1/ptm/m/n/10 s are found. The
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 []\T1/pcr/m/n/10 summary(object, method = c("XtX", "XtWX"), correlation = FALS
E, ...)[] 
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[]\T1/ptm/m/n/10 ``Fold your arms! Which is on top'' (Fac-tor, with lev-els []\
T1/pcr/m/n/10 "R on L"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "L on R"[]\T1/ptm/m/n
/10 ,
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[]\T1/ptm/m/n/10 how much the stu-dent smokes. (Fac-tor, lev-els []\T1/pcr/m/n/
10 "Heavy"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Regul" []\T1/ptm/m/n/10 (reg-u-l
arly),
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 []\T1/pcr/m/n/10 theta.md(y, mu, dfr, weights, limit = 20, eps = .Machine$doub
le.eps^0.25) 
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 []\T1/pcr/m/n/10 theta.ml(y, mu, n, weights, limit = 10, eps = .Machine$double
.eps^0.25,[] 
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 []\T1/pcr/m/n/10 theta.mm(y, mu, dfr, weights, limit = 10, eps = .Machine$doub
le.eps^0.25)[] 
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[]\T1/ptm/m/n/10 The orig-i-nal data are avail-able at [][]$\T1/pcr/m/n/10 http
s : / / lib . stat . cmu . edu / datasets / 1993 .
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Chapter 17.
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[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
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\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
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[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
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[]\T1/ptm/m/n/10 in gen-eral an ar-bi-trary num-ber of \T1/phv/m/n/10 R \T1/ptm
/m/n/10 ob-jects; here, when the first is
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\T1/ptm/m/n/10 an []\T1/pcr/m/n/10 "[][]abIndex[][][]" []\T1/ptm/m/n/10 vec-tor
, these ar-gu-ments will be con-cate-nated to a new
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal
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                   \relax 
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[]\T1/ptm/m/n/10 these three meth-ods are sim-ply us-ing
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[]\T1/ptm/m/n/10 There are more meth-ods, no-tably also for []\T1/pcr/m/n/10 "[
][]sparseVector[][][]"[]\T1/ptm/m/n/10 's, see
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[]\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic
 func-tion
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 []   \T1/pcr/m/n/9 band(sm5, -1, 1)# "dsyMatrix": symmetric band preserves sym
metry property[] 
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[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
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 []\T1/pcr/m/n/9 s1 <- bandSparse(13, k = -c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
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 []\T1/pcr/m/n/9 s2 <- bandSparse(13, k =  c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
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 []\T1/pcr/m/n/9 lLis <- lapply(list(rpois(20, 2), rpois(20, 1), rpois(20, 3))[
c(1:3, 2:3, 3:2)],[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Fast version of Matrix :: .bd
iag() -- for the case of *many*  (k x k) matrices:[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @param lmat list(<mat1>, <mat
2>, ....., <mat_N>)  where each mat_j is a  k x k \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 matrix\TS1/pcr/m/n/9 '[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @return a sparse (N*k x N*k) 
matrix of class  \code{"\linkS4class{dgCMatrix}"}.[] 
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 []        \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 i :\TS1/pcr/m/n/9 ' \
T1/pcr/m/n/9 maybe there\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s a faster way (w/o matri
x indexing), but elegant?[] 
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 []        \T1/pcr/m/n/9 i = as.vector(matrix(0L:(M-1L), nrow=k)[, rep(seq_len(
N), each=k)]),[] 
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 []\T1/pcr/m/n/9 L. <- L; L.[1:2,1] <- TRUE; L.@x[1:2] <- FALSE; L. # has "zero
s" to drop0()[] 
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[]\T1/pcr/m/n/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more 
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[]\T1/pcr/m/n/10 signature(from = "p?BunchKaufman", logarithm =
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
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[]\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing
 from vir-tual class
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 []\T1/pcr/m/n/9 stopifnot(all.equal(as(A, "matrix"), as(Reduce(\TS1/cmtt/m/n/9
 `\T1/pcr/m/n/9 %*%\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 , e.bk.A), "matrix")))[] 
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l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2}
                                              
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[]\T1/ptm/m/n/10 Our class def-i-ni-tion help pages men-tion-ing []\T1/pcr/m/n/
10 cbind2() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 rbind2() []\T1/ptm/m/n/10 met
h-ods:
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[]\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/pcr/m/n/10 CHMfactor []\
T1/ptm/m/n/10 is based on CHOLMOD's C-level
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[]\T1/pcr/m/n/10 signature(from = "CHMfactor", logarithm = "logical")[]\T1/ptm/
m/n/10 : be-
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[]\T1/pcr/m/n/10 signature(update = ., C = ., object = "CHMfactor")[]\T1/ptm/m/
n/10 : see
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[]\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g
ithub . com / DrTimothyAldenDavis /
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\T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p
cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
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 []    \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(e.ch.A, L1 %*%
 D %*% L1.))[] 
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 []    \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(E.ch.A, L  %*%
         L. ))[] 
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 []\T1/pcr/m/n/9 u2 <- update(ch.A, t(M), mult = sqrt(2)) # updating with cross
prod(M), not M[] 
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\T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt
ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and
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[]\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g
ithub . com / DrTimothyAldenDavis /
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\T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length []\T1/pcr/m/n/10 n*n []\T1/ptm/m/
n/10 ([]\T1/pcr/m/n/10 Cholesky[]\T1/ptm/m/n/10 ) or []\T1/pcr/m/n/10 n*(n+1)/2
 []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 pCholesky[]\T1/ptm/m/n/10 ), where
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[]\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 CholeskyFactorization[][][][]\T1/pt
m/m/n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1
/ptm/m/n/10 , by class
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[]\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T
1/pcr/m/n/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or
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[]\T1/pcr/m/n/10 signature(from = "pCholesky", to = "dtpMatrix")[]\T1/ptm/m/n/1
0 : re-turns a
Underfull \hbox (badness 10000) in paragraph at lines 2032--2035
[]\T1/pcr/m/n/10 signature(from = "p?Cholesky", logarithm = "logical")[]\T1/ptm
/m/n/10 :
[2382]
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\T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt
ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and
[2383]
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 2121--2121
 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
[2384]
Underfull \hbox (badness 10000) in paragraph at lines 2252--2259
[]\T1/ptm/m/n/10 a [][]fi-nite[][][] num-ber. The ma-trix that is fac-tor-ized 
is []\T1/pcr/m/n/10 A + Imult *
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\T1/pcr/m/n/10 - diag(abs(A))) []\T1/ptm/m/n/10 en-sures that []\T1/pcr/m/n/10 
A + Imult * diag(nrow(A)) []\T1/ptm/m/n/10 is di-
[2385]
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[]\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing
 from vir-tual class
Underfull \hbox (badness 10000) in paragraph at lines 2315--2319
\T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt
ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and
Underfull \hbox (badness 1917) in paragraph at lines 2320--2324
[]\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g
ithub . com / DrTimothyAldenDavis /
Underfull \hbox (badness 8132) in paragraph at lines 2320--2324
\T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p
cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing
[2386]
[2387]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2437--2437
 []     \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm =  TRUE, super = FALSE, L
DL =  TRUE),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2438--2438
 []          \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm =  TRUE, super = FALSE, L
DL = FALSE),[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2439--2439
 []          \T1/pcr/m/n/9 super0 = Cholesky(A4, perm =  TRUE, super =  TRUE   
          )),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2441--2441
 []     \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm = FALSE, super = FALSE, L
DL =  TRUE),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2442--2442
 []          \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm = FALSE, super = FALSE, L
DL = FALSE),[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2443--2443
 []          \T1/pcr/m/n/9 super0 = Cholesky(A4, perm = FALSE, super =  TRUE   
          )))[] 
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 []\T1/pcr/m/n/9 rapply2 <- function(object, f, ...) rapply(object, f, , , how 
= "list", ...)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2388]
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 []          \T1/pcr/m/n/9 x = c(1, 6, 38, 10, 60, 103, -4, 6, -32, -247, -2, -
16, -128, -2, -67))[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2389]
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 []  \T1/pcr/m/n/9 show(a1 <- sparseMatrix(i= c(1:4),   j=c(2:4,1),   x = 2,   
 dimnames=dns))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 2614--2614
 []  \T1/pcr/m/n/9 show(a2 <- sparseMatrix(i= c(1:4,4), j=c(2:4,1:2), x = TRUE,
 dimnames=dns))[] 
[2390]
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 []  \T1/pcr/m/n/9 a. <- sparseMatrix(i=4:1, j=1:4, dimnames=list(n4, n4), repr
="T") # no \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 x\TS1/pcr/m/n/9 '[] 
[2391]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colMeans}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2696 ...asA{colMeans}{colSums-methods}{colMeans}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colSums})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2704 \aliasA{colSums}{colSums-methods}{colSums}
                                                 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowMeans}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowSums})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2719 \aliasA{rowSums}{colSums-methods}{rowSums}
                                                 
Underfull \hbox (badness 2922) in paragraph at lines 2771--2775
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sparse, i.e., i
n-her-it-ing from
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\T1/ptm/m/n/10 class [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/n/10 . 
Only ap-pli-ca-ble when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is in-her-it-ing fr
om a
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[][][]\T1/pcr/m/n/10 dimnames[][][](x) []\T1/ptm/m/n/10 are only kept (as [][][
]\T1/pcr/m/n/10 names[][][](v)[]\T1/ptm/m/n/10 ) when the re-sult-ing []\T1/pcr
/m/n/10 v []\T1/ptm/m/n/10 is [][][]\T1/pcr/m/n/10 numeric[][][][]\T1/ptm/m/n/1
0 , since
[2392]
[2393]
Underfull \hbox (badness 3547) in paragraph at lines 2888--2891
[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2394]
[2395]
[2396]
[2397]
[2398]
Underfull \hbox (badness 10000) in paragraph at lines 3290--3293
[]\T1/pcr/m/n/10 signature(from = "denseLU", logarithm = "logical")[]\T1/ptm/m/
n/10 : com-
[2399]
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 3352--3352
 []              \T1/pcr/m/n/9 new(  "pMatrix", Dim = c(n, n), Dimnames = c(dn[
1L], list(NULL)),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3355--3355
 []              \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = list(
NULL, NULL),[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 3358--3358
 []              \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = c(lis
t(NULL), dn[2L]),[] 
[2400]
Underfull \hbox (badness 7379) in paragraph at lines 3486--3488
[]\T1/pcr/m/n/10 signature(x = "dgCMatrix")[]\T1/ptm/m/n/10 : com-putes the LU 
de-com-po-si-tion of a square
[2401]
[2402]
[2403]
Underfull \hbox (badness 4846) in paragraph at lines 3707--3711
[]\T1/ptm/m/n/10 Note that both []\T1/pcr/m/n/10 new(.) []\T1/ptm/m/n/10 and []
[][]\T1/pcr/m/n/10 spMatrix[][][] []\T1/ptm/m/n/10 con-struc-tors for []\T1/pcr
/m/n/10 "dgTMatrix" []\T1/ptm/m/n/10 (and other
Underfull \hbox (badness 2717) in paragraph at lines 3712--3716
[]\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in
 more than one pos-si-ble
[2404]
Underfull \hbox (badness 5231) in paragraph at lines 3757--3762
[]\T1/ptm/m/n/10 Construct a for-mally di-ag-o-nal [][][]\T1/pcr/m/n/10 Matrix[
][][][]\T1/ptm/m/n/10 , i.e., an ob-ject in-her-it-ing from vir-tual class
Overfull \hbox (84.78088pt too wide) in paragraph at lines 3768--3768
 []\T1/pcr/m/n/10 .sparseDiagonal(n, x = NULL, uplo = "U", shape = "t", unitri 
= TRUE, kind, cols)[] 
[2405]
Underfull \hbox (badness 10000) in paragraph at lines 3824--3827
[]\T1/pcr/m/n/10 .trDiagonal() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 .symDiagon
al() []\T1/ptm/m/n/10 are sim-ple wrap-pers, for
Underfull \hbox (badness 6792) in paragraph at lines 3824--3827
[]\T1/pcr/m/n/10 .sparseDiagonal(shape = "t") []\T1/ptm/m/n/10 and []\T1/pcr/m/
n/10 .sparseDiagonal(shape = "s")[]\T1/ptm/m/n/10 , re-spec-
[2406]
Underfull \hbox (badness 3646) in paragraph at lines 3901--3904
[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 dimnames[][][][]\T1/ptm/m/n/10 , a []
[][]\T1/pcr/m/n/10 list[][][][]\T1/ptm/m/n/10 , see the [][][]\T1/pcr/m/n/10 Ma
trix[][][] []\T1/ptm/m/n/10 class de-scrip-tion. Typ-i-cally
Underfull \hbox (badness 6542) in paragraph at lines 3936--3940
[]\T1/pcr/m/n/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these gr
oup meth-ods re-turn a
Underfull \hbox (badness 4518) in paragraph at lines 3945--3951
[]\T1/pcr/m/n/10 signature(e1 = "ddiMatrix", e2="denseMatrix")[]\T1/ptm/m/n/10 
: the re-sult is from class
[2407]
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[]\T1/pcr/m/n/10 (object = "diagonalMatrix")[]\T1/ptm/m/n/10 : Re-turns an ob-j
ect of S3 class
Underfull \hbox (badness 2318) in paragraph at lines 3962--3966
[][][]\T1/pcr/m/n/10 Diagonal[][][]() []\T1/ptm/m/n/10 as con-struc-tor of thes
e ma-tri-ces, and [][][]\T1/pcr/m/n/10 isDiagonal[][][][]\T1/ptm/m/n/10 . [][][
]\T1/pcr/m/n/10 ddiMatrix[][][] []\T1/ptm/m/n/10 and
[2408]
[2409]
[2410]
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[]\T1/pcr/m/n/10 signature(x = "dMatrix", digits = "numeric")[]\T1/ptm/m/n/10 :
 this group con-tains
[2411]
[2412]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 4360--4360
 []\T1/pcr/m/n/9 stopifnot(all.equal(S9p0, S9p))# same as as default, but diffe
rent from the random one[] 
[2413]
Underfull \hbox (badness 2469) in paragraph at lines 4474--4477
[]\T1/pcr/m/n/10 signature(x = "dpoMatrix")[]\T1/ptm/m/n/10 : Re-turns the [][]
[]\T1/pcr/m/n/10 determinant[][][] []\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 x[]\T1/
ptm/m/n/10 , via
[2414]
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[]\T1/ptm/m/n/10 Currently the va-lid-ity meth-ods for these classes such as
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[][][]\T1/pcr/m/n/10 getValidity[][][](getClass("dpoMatrix")) []\T1/ptm/m/n/10 
for ef-fi-ciency rea-sons only check the di-
Underfull \hbox (badness 1748) in paragraph at lines 4503--4512
\T1/pcr/m/n/10 error=identity), "error") []\T1/ptm/m/n/10 . In-deed, when \T1/p
tm/m/it/10 co-erc-ing \T1/ptm/m/n/10 to these classes, a ver-sion
Underfull \hbox (badness 1590) in paragraph at lines 4503--4512
\T1/ptm/m/n/10 of [][][]\T1/pcr/m/n/10 Cholesky[][][]() []\T1/ptm/m/n/10 or [][
][]\T1/pcr/m/n/10 chol[][][]() []\T1/ptm/m/n/10 is typ-i-cally used, e.g., see 
[]\T1/pcr/m/n/10 selectMethod("coerce",
Underfull \hbox (badness 6675) in paragraph at lines 4559--4566
[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 Matrix[][][][]\T1/ptm/m/n/10 , typ-i-ca
lly in-her-it-ing from vir-tual class [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]
\T1/ptm/m/n/10 .
Underfull \hbox (badness 6493) in paragraph at lines 4559--4566
[][][]\T1/pcr/m/n/10 denseMatrix[][][] []\T1/ptm/m/n/10 and tra-di-tional vec-t
ors and ma-tri-ces are co-erced to
[2415]
Underfull \hbox (badness 10000) in paragraph at lines 4574--4582
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing if the re-sult must in-herit from vi
r-tual class
Underfull \hbox (badness 1365) in paragraph at lines 4574--4582
[][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 . If []\T1/pcr/m/n/10 
FALSE []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 in-her-its from 
[][][]\T1/pcr/m/n/10 RsparseMatrix[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4597--4600
[]\T1/ptm/m/n/10 Function [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/
10 , for con-struct-ing ob-jects in-her-it-ing from vir-tual class
[2416]
Underfull \hbox (badness 10000) in paragraph at lines 4641--4645
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsCMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 2103) in paragraph at lines 4641--4645
[]\T1/pcr/m/n/10 new("dsTMatrix", ...)[]\T1/ptm/m/n/10 , or au-to-mat-i-cally v
ia e.g., []\T1/pcr/m/n/10 as(*, "symmetricMatrix")[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1571) in paragraph at lines 4691--4694
[]\T1/pcr/m/n/10 signature(x = "dsCMatrix", pivot = "logical")[]\T1/ptm/m/n/10 
: Re-turns (and stores) the
[2417]
[2418]
Underfull \hbox (badness 1221) in paragraph at lines 4834--4837
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "dMatrix"[]\T1/ptm/m/n/10 , by class []
\T1/pcr/m/n/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/pcr/m/n/10 "sparse
Matrix"[]\T1/ptm/m/n/10 , by classes
Underfull \hbox (badness 1400) in paragraph at lines 4844--4847
[]\T1/pcr/m/n/10 signature(x = "dsRMatrix", uplo = "character")[]\T1/ptm/m/n/10
 : if []\T1/pcr/m/n/10 uplo ==
[2419]
Underfull \hbox (badness 10000) in paragraph at lines 4896--4898
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsyMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 1365) in paragraph at lines 4932--4935
[]\T1/pcr/m/n/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/10
 , or []\T1/pcr/m/n/10 x = "dsyMatrix"
[2420]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4978--4978
 []\T1/pcr/m/n/9 stopifnot(all(S1 == S2)) # equal "seen as matrix", but differ 
internally :[] 
[2421]
[2422]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5084--5084
 []\T1/pcr/m/n/9 U5 <- new("dtCMatrix", i= c(1L, 0:3), p=c(0L,0L,0:2, 5L), Dim 
= c(5L, 5L),[] 
Underfull \hbox (badness 3635) in paragraph at lines 5139--5143
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ddenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Cla
ss
Underfull \hbox (badness 10000) in paragraph at lines 5148--5151
[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
Underfull \hbox (badness 10000) in paragraph at lines 5151--5155
[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/n
/10 : the
[2423]
[2424]
[2425]
[2426]
Underfull \hbox (badness 10000) in paragraph at lines 5399--5401
[]\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir
-tual class
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 []    \T1/pcr/m/n/10 all.equal(as(x, "matrix"), as(Reduce(\TS1/cmtt/m/n/10 `\T
1/pcr/m/n/10 %*%\TS1/cmtt/m/n/10 `\T1/pcr/m/n/10 , expand2(y)), "matrix")) 
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 [] [] 
[2427]
Underfull \hbox (badness 7064) in paragraph at lines 5477--5494
[]\T1/pcr/m/n/10 signature(x = "p?BunchKaufman")[]\T1/ptm/m/n/10 : ex-pands the
 fac-tor-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 =
Underfull \hbox (badness 3000) in paragraph at lines 5506--5513
[]\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : ex-pands the fac-to
r-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 = \OML/cmm/m/it/10 P[]LU$ \T1/pt
m/m/n/10 as
Underfull \hbox (badness 2735) in paragraph at lines 5522--5529
[]\T1/pcr/m/n/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/
10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L)[]\T1/p
tm/m/n/10 .
Underfull \hbox (badness 1337) in paragraph at lines 5529--5544
[]\T1/pcr/m/n/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/1
0 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L, U,
Underfull \hbox (badness 2680) in paragraph at lines 5529--5544
\T1/pcr/m/n/10 Q)[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 expand(x)[["Q"]] []\T1/ptm
/m/n/10 and []\T1/pcr/m/n/10 expand2(x)[["P2."]] []\T1/ptm/m/n/10 rep-re-sent t
he same per-
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\T1/ptm/m/n/10 mu-ta-tion ma-trix $\OML/cmm/m/it/10 P[]$ \T1/ptm/m/n/10 but hav
e op-po-site []\T1/pcr/m/n/10 margin []\T1/ptm/m/n/10 slots and in-verted []\T1
/pcr/m/n/10 perm []\T1/ptm/m/n/10 slots.
Underfull \hbox (badness 2073) in paragraph at lines 5544--5549
[]\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/10
 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(L, U, P)[]\T1/
ptm/m/n/10 .
[2428]
[2429]
[2430]
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 []\T1/pcr/m/n/9 str(pores <- readMM(system.file("external/pores_1.mtx", packag
e = "Matrix")))[] 
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 []\T1/pcr/m/n/9 str(utm   <- readHB(system.file("external/utm300.rua" , packag
e = "Matrix")))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5754--5754
 []\T1/pcr/m/n/9 str(lundA <- readMM(system.file("external/lund_a.mtx" , packag
e = "Matrix")))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5755--5755
 []\T1/pcr/m/n/9 str(lundA <- readHB(system.file("external/lund_a.rsa" , packag
e = "Matrix")))[] 
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 []\T1/pcr/m/n/9 ## https://math.nist.gov/MatrixMarket/data/Harwell-Boeing/coun
terx/counterx.htm[] 
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 []\T1/pcr/m/n/9 str(jgl   <- readMM(system.file("external/jgl009.mtx" , packag
e = "Matrix")))[] 
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 []\T1/pcr/m/n/9 u. <- url("https://www.cise.ufl.edu/research/sparse/RB/Boeing/
msc00726.tar.gz")[] 
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 []\T1/pcr/m/n/9 ## Store as MatrixMarket (".mtx") file, here inside temporary 
dir./folder:[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5771--5771
 []\T1/pcr/m/n/9 file.info(MMfile)[,c("size", "ctime")] # (some confirmation of
 the file\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s)[] 
[2431]
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 []\T1/pcr/m/n/9 ## has columns (i, j, x) -> we can use via do.call() as argume
nts to sparseMatrix():[] 
[2432]
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 []    \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans =  TRUE, left =  TRUE),  
crossprod(L, y))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5844--5844
 []    \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans =  TRUE, left = FALSE), t
crossprod(y, L))[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 5923--5923
 []\T1/pcr/m/n/10 .diag2dense(from, kind = ".", shape = "t", packed = FALSE, up
lo = "U")[] 
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 []\T1/pcr/m/n/10 .m2dense(from, class = ".ge", uplo = "U", diag = "N", trans =
 FALSE)[] 
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 []\T1/pcr/m/n/10 .diag2sparse(from, kind = ".", shape = "t", repr = "C", uplo 
= "U")[] 
[2433]
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 []\T1/pcr/m/n/10 .m2sparse(from, class = ".gC", uplo = "U", diag = "N", trans 
= FALSE)[] 
Underfull \hbox (badness 10000) in paragraph at lines 6000--6002
[]\T1/ptm/m/n/10 a string in []\T1/pcr/m/n/10 c("trace", "sumLog", "prod", "min
", "max",
[2434]
Underfull \hbox (badness 10000) in paragraph at lines 6073--6079
[][]\T1/pcr/m/n/10 .solve.dgC.*(a, b)[]\T1/ptm/b/n/10 :  []\T1/pcr/m/n/10 .solv
e.dgC.lu(a, b) []\T1/ptm/m/n/10 needs a square ma-trix []\T1/pcr/m/n/10 a[]\T1/
ptm/m/n/10 .
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[]\T1/pcr/m/n/10 .solve.dgC.qr(a, b) []\T1/ptm/m/n/10 needs a ``long'' ma-trix 
[]\T1/pcr/m/n/10 a[]\T1/ptm/m/n/10 , with []\T1/pcr/m/n/10 nrow(a) >= ncol(a)[]
\T1/ptm/m/n/10 .
[2435]
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[][]\T1/pcr/m/n/10 .updateCHMfactor(object, parent, mult)[]\T1/ptm/b/n/10 :  []
\T1/pcr/m/n/10 .updateCHMfactor []\T1/ptm/m/n/10 up-
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\T1/ptm/m/n/10 dates []\T1/pcr/m/n/10 object []\T1/ptm/m/n/10 with the re-sult 
of Cholesky fac-tor-iz-ing []\T1/pcr/m/n/10 F(parent) + mult[1] *
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\T1/pcr/m/n/10 diag(nrow(parent))[]\T1/ptm/m/n/10 , i.e., []\T1/pcr/m/n/10 F(pa
rent) []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 mult[1] []\T1/ptm/m/n/10 times the
 iden-tity ma-trix,
[2436]
[2437]
[2438]
[2439]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.image}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6399 \aliasA{image}{image-methods}{image}
                                           
[2440]
[2441]
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[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
][]\T1/pcr/m/n/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use
Overfull \hbox (47.58038pt too wide) in paragraph at lines 6514--6514
 []\T1/pcr/m/n/9 stopifnot(!is.null(leg <- imgC$legend), is.list(leg$right)) # 
failed for 2 days ..[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6534--6534
 []\T1/pcr/m/n/9 ## Using (xlim,ylim) has advantage : matrix dimension and (col
/row) indices:[] 
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 [] \T1/pcr/m/n/9 I2 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE,    
    border.col=NA)[] 
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 [] \T1/pcr/m/n/9 I3 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd
=2, border.col=NA)[] 
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 []\T1/pcr/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor
der.col = adjustcolor("skyblue", 1/2))[] 
[2442]
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 []\T1/pcr/m/n/9 image(USCounties, useRaster = TRUE) # should not suffer from a
nti-aliasing[] 
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 []   \T1/pcr/m/n/9 ## and now look at the *.png image in a viewer you can easi
ly zoom in and out[] 
[2443]
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[]\T1/pcr/m/n/10 signature(x = "indMatrix", y = "Matrix") []\T1/ptm/m/n/10 and 
oth-ers listed by
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[]\T1/pcr/m/n/10 showMethods("%*%", classes = "indMatrix")[]\T1/ptm/m/n/10 : ma
-trix prod-ucts im-ple-mented
Underfull \hbox (badness 10000) in paragraph at lines 6687--6690
[]\T1/pcr/m/n/10 signature(from = "numeric", to = "indMatrix")[]\T1/ptm/m/n/10 
: sup-port-ing typ-i-cal
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[]\T1/pcr/m/n/10 signature(from = "list", to = "indMatrix")[]\T1/ptm/m/n/10 : s
up-port-ing []\T1/pcr/m/n/10 indMatrix
[2444]
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[]\T1/pcr/m/n/10 signature(x = "indMatrix")[]\T1/ptm/m/n/10 : row and
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[]\T1/pcr/m/n/10 signature(X = "indMatrix", Y = "indMatrix")[]\T1/ptm/m/n/10 : 
Kro-necker prod-uct of
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[]\T1/ptm/m/n/10 Fabian Scheipl at `\T1/pcr/m/n/10 uni-muenchen.de\T1/ptm/m/n/1
0 ', build-ing on the ex-ist-ing class [][][]\T1/pcr/m/n/10 pMatrix[][][] []\T1
/ptm/m/n/10 af-ter
Underfull \hbox (badness 1253) in paragraph at lines 6717--6726
\T1/ptm/m/n/10 a nice hike's con-ver-sa-tion with Mar-tin Maech-ler. Meth-ods f
or [][][]\T1/pcr/m/n/10 crossprod[][][](x, y) []\T1/ptm/m/n/10 and
[2445]
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[]\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be
 a per-mu-ta-tion of
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[]\T1/pcr/m/n/10 invertPerm(p) []\T1/ptm/m/n/10 re-turns an in-te-ger vec-tor o
f length []\T1/pcr/m/n/10 length(p) []\T1/ptm/m/n/10 such that
Underfull \hbox (badness 4441) in paragraph at lines 6837--6841
[]\T1/pcr/m/n/10 p[invertPerm(p)] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 invertP
erm(p)[p] []\T1/ptm/m/n/10 are both []\T1/pcr/m/n/10 seq_along(p)[]\T1/ptm/m/n/
10 , i.e., the
[2446]
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 []\T1/pcr/m/n/9 ## Product of transpositions (1 2)(2 1)(4 3)(6 8)(10 1) = (3 4
)(6 8)(1 10)[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6888 \aliasA{anyNA}{is.na-methods}{anyNA}
                                           
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.finite
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6895 ...asA{is.finite}{is.na-methods}{is.finite}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.infini
te}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6903 ...is.infinite}{is.na-methods}{is.infinite}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.na}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6911 \aliasA{is.na}{is.na-methods}{is.na}
                                           
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.nan}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6918 \aliasA{is.nan}{is.na-methods}{is.nan}
                                             
[2447]
[2448]
[2449]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.isSymmetr
ic}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7077 ...etric}{isSymmetric-methods}{isSymmetric}
                                                  
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 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub
le.eps, tol1 = 8 * tol, ...)[] 
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 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub
le.eps, ...)[] 
[2450]
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 []\T1/pcr/m/n/9 isSymmetric(as(M, "generalMatrix")) # still symmetric, even if
 not "formally"[] 
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 []\T1/pcr/m/n/9 showMethods("isSymmetric", includeDefs = TRUE) # includes S3 g
eneric from base[] 
[2451]
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 []\T1/pcr/m/n/9 isTriangular(as(M, "generalMatrix")) # still triangular, even 
if not "formally"[] 
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 []\T1/pcr/m/n/10 KhatriRao(X, Y = X, FUN = "*", sparseY = TRUE, make.dimnames 
= FALSE) 
[2452]
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 []\T1/pcr/m/n/9 stopifnot(all(K1 <- KhatriRao(nd, zm) == 0), identical(dim(K1)
, c(12L, 4L)),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7372--7372
 []          \T1/pcr/m/n/9 all(K2 <- KhatriRao(zm, nd) == 0), identical(dim(K2)
, c(12L, 4L)))[] 
[2453]
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 []   \T1/pcr/m/n/9 identical(dimnames(KhatriRao(m, d0, make.dimnames=TRUE)), d
imnames(Kmd)))[] 
[2454]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kronecker
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7453 ...kronecker}{kronecker-methods}{kronecker}
                                                  
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[]\T1/pcr/m/n/10 ldenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
[2455]
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[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2456
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,ndiMatr
ix,Matrix.Rdash.method}) has been already used, duplicate ignored
<argument> ...shipout:D \box_use:N \l_shipout_box 
                                                  \__shipout_drop_firstpage_...
l.7689 C
        lass \code{"\LinkA{sparseMatrix}{sparseMatrix.Rdash.class}"}, by cla...
]
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[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ldenseMatrix"[]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 7744--7747
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2457]
Underfull \hbox (badness 10000) in paragraph at lines 7801--7811
[]\T1/pcr/m/n/10 lsTMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltTMatrix[]\T
1/ptm/m/n/10 ) or in com-pressed column-oriented form (class
Underfull \hbox (badness 1242) in paragraph at lines 7801--7811
[][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pc
r/m/n/10 lgCMatrix[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lsCMatrix[]\T1/ptm/m/n/10
 , and []\T1/pcr/m/n/10 ltCMatrix[]\T1/ptm/m/n/10 ) or--\T1/ptm/m/it/10 rarely\
T1/ptm/m/n/10 --in
[2458]
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[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2459]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2460]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2461]
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[2463]
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[]\T1/ptm/m/n/10 vector of all non-zero en-tries of []\T1/pcr/m/n/10 x[]\T1/ptm
/m/n/10 ; ex-ists \T1/ptm/b/n/10 only \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 as(x
,
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[]\T1/pcr/m/n/10 mat2triplet() []\T1/ptm/m/n/10 is con-cep-tu-ally the \T1/ptm/
m/it/10 in-verse \T1/ptm/m/n/10 func-tion of [][][]\T1/pcr/m/n/10 spMatrix[][][
] []\T1/ptm/m/n/10 and (one case of)
[2464]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rpcent.*
.Rpcent.}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8310 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8384 ...A{crossprod}{matmult-methods}{crossprod}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrosspro
d}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8460 ...tcrossprod}{matmult-methods}{tcrossprod}
                                                  
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\T1/ptm/m/n/10 ally im-ple-mented ef-fi-ciently with-out com-put-ing [][][]\T1/
pcr/m/n/10 t[][][](.)[]\T1/ptm/m/n/10 's un-nec-es-sar-ily. They also re-turn
[2465]
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[]\T1/pcr/m/n/10 signature(x = "dgeMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
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[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-tures (use
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[]\T1/pcr/m/n/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-tr
ix mul-ti-pli-ca-tion. Mul-ti-
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\T1/ptm/m/n/10 sig-na-tures, use []\T1/pcr/m/n/10 showMethods("crossprod", clas
s = "dgeMatrix")[]\T1/ptm/m/n/10 , ma-trix
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[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-
[2466]
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8856 \aliasA{det}{Matrix-class}{det}
                                      
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[]\T1/pcr/m/n/10 signature(x = "Matrix", value = "list")[]\T1/ptm/m/n/10 : set 
the []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 to a
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[2469]
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[]\T1/pcr/m/n/10 signature(from = "ANY", to = "Matrix")[]\T1/ptm/m/n/10 : This 
re-lies on a cor-rect
[2470]
[2471]
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[]\T1/pcr/m/n/10 CholeskyFactorization[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Bunch
KaufmanFactorization[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 signature(x = "MatrixFactorization", logarithm =
Underfull \hbox (badness 10000) in paragraph at lines 9165--9168
[]\T1/pcr/m/n/10 signature(obj = "MatrixFactorization")[]\T1/ptm/m/n/10 : re-tu
rns []\T1/pcr/m/n/10 obj []\T1/ptm/m/n/10 with
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[]\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 CholeskyFactorization[]\T
1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 Cholesky[][][][]\T1/ptm/m/n/10 , [][
][]\T1/pcr/m/n/10 pCholesky[][][][]\T1/ptm/m/n/10 , and
[2472]
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[]\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 BunchKaufmanFactorization
[]\T1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 BunchKaufman[][][] []\T1/ptm/m/n
/10 and
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[]\T1/ptm/m/n/10 Generic func-tions [][][]\T1/pcr/m/n/10 expand1[][][] []\T1/pt
m/m/n/10 and [][][]\T1/pcr/m/n/10 expand2[][][] []\T1/ptm/m/n/10 for con-struct
-ing ma-trix fac-tors from
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[]\T1/pcr/m/n/10 ndenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
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[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2473]
Underfull \hbox (badness 3312) in paragraph at lines 9311--9313
[]\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/pcr/m/n/10 X <- (X + t(X))/2 []
\T1/ptm/m/n/10 should be done, af-ter []\T1/pcr/m/n/10 X <-
[2474]
[2475]
Overfull \hbox (85.38034pt too wide) in paragraph at lines 9414--9414
 []   \T1/pcr/m/n/9 all.equal(n.A.m, unname(as.matrix(n.A$mat)), tolerance = 1e
-15)# seen rel.d.= 1.46e-16[] 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(ncr, ncF))# norm type does not matter at a
ll in this example[] 
[2476]
Underfull \hbox (badness 2635) in paragraph at lines 9507--9512
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ndenseMatrix"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 4229) in paragraph at lines 9507--9512
\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 9515--9518
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2477]
Underfull \hbox (badness 2521) in paragraph at lines 9583--9589
[]\T1/pcr/m/n/10 signature(from = "matrix", to = "nMatrix")[]\T1/ptm/m/n/10 : N
ote that these co-er-cions
[2478]
Underfull \hbox (badness 1867) in paragraph at lines 9696--9698
[]\T1/ptm/m/n/10 fast sim-
[2479]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9738 \aliasA{norm}{norm-methods}{norm}
                                        
[2480]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9833--9833
 []\T1/pcr/m/n/9 A <- sparseMatrix(i, j, x = x)                      ##  8 x 10
 "dgCMatrix"[] 
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 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9835--9835
 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
Underfull \hbox (badness 2401) in paragraph at lines 9880--9890
[]\T1/ptm/m/n/10 These can be stored in the ``triplet'' form ([][][]\T1/pcr/m/n
/10 TsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pcr/m/n/10 ngTMatri
x[]\T1/ptm/m/n/10 ,
[2481]
Underfull \hbox (badness 3179) in paragraph at lines 9951--9954
[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2482]
Underfull \hbox (badness 10000) in paragraph at lines 10031--10034
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2483]
Underfull \hbox (badness 10000) in paragraph at lines 10095--10098
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2484]
Underfull \hbox (badness 10000) in paragraph at lines 10169--10171
[]\T1/ptm/m/n/10 typically a []\T1/pcr/m/n/10 "packedMatrix"[]\T1/ptm/m/n/10 , 
though
[2485]
[2486]
[2487]
Underfull \hbox (badness 10000) in paragraph at lines 10383--10386
[]\T1/pcr/m/n/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and ot
h-ers listed by
Underfull \hbox (badness 8189) in paragraph at lines 10383--10386
[]\T1/pcr/m/n/10 showMethods("%*%", classes = "pMatrix")[]\T1/ptm/m/n/10 : ma-t
rix prod-ucts im-ple-mented
Underfull \hbox (badness 10000) in paragraph at lines 10386--10390
[]\T1/pcr/m/n/10 signature(from = "numeric", to = "pMatrix")[]\T1/ptm/m/n/10 : 
sup-port-ing typ-i-cal
Underfull \hbox (badness 2460) in paragraph at lines 10394--10400
[]\T1/pcr/m/n/10 signature(a = "pMatrix", b = "missing")[]\T1/ptm/m/n/10 : the 
in-verse per-mu-ta-tion ma-trix,
[2488]
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 []               \T1/pcr/m/n/10 col.names, note.dropping.colnames = TRUE, uniD
iag = TRUE,[] 
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 []\T1/pcr/m/n/10 printSpMatrix(x, digits = NULL, maxp = max(100L, getOption("m
ax.print")),[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 10469--10469
 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 10473--10473
 []\T1/pcr/m/n/10 printSpMatrix2(x, digits = NULL, maxp = max(100L, getOption("
max.print")),[] 
[2489]
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 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
Underfull \hbox (badness 3989) in paragraph at lines 10499--10509
[]\T1/ptm/m/n/10 logical or string spec-i-fy-ing if and how col-umn names of []
\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 should
Underfull \hbox (badness 10000) in paragraph at lines 10499--10509
\T1/ptm/m/n/10 be printed, pos-si-bly ab-bre-vi-ated. The de-fault is taken fro
m
[2490]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10601 \aliasA{qr}{qr-methods}{qr}
                                   
[2491]
[2492]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 10733--10733
 []    \T1/pcr/m/n/9 all.equal(qr.coef(qr.A1, b), drop(solve(crossprod(A1), cro
ssprod(A1, b))))[] 
[2493]
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 []    \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 qr.coef\TS1/pcr/m/n/9 ' \
T1/pcr/m/n/9 computes unique least squares solution of "nearby" problem[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 10750--10750
 []    \T1/pcr/m/n/9 ## Z x = b for some full rank Z ~ A, currently without war
ning {FIXME} ![] 
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2494]
Underfull \hbox (badness 2005) in paragraph at lines 10845--10851
[]\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/pcr/m/n/10 
qr[][][](x, tol,
Underfull \hbox (badness 10000) in paragraph at lines 10862--10865
[]\T1/ptm/m/n/10 is for back com-pat-i-bil-ity; for dense []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 , it cor-re-sponds to
[2495]
[2496]
Overfull \hbox (85.38034pt too wide) in paragraph at lines 10959--10959
 []\T1/pcr/m/n/9 ## The meaning of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 tol\TS1/pcr/m/
n/9 ' \T1/pcr/m/n/9 for method="qrLINPACK" and *dense* x is not entirely "scale
 free"[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 10975--10975
 []\T1/pcr/m/n/9 sapply(meths, function(.m.) rankMatrix(M15, method = .m., tol 
= 1e-7)) # all 14[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 10982--10982
 []\T1/pcr/m/n/9 (st1 <- system.time(r1 <- rankMatrix(L)))                # war
ning+ ~1.5 sec (2013)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 10983--10983
 []\T1/pcr/m/n/9 (st2 <- system.time(r2 <- rankMatrix(L, method = "qr"))) # con
siderably faster![] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11002 \aliasA{rcond}{rcond-methods}{rcond}
                                            
[2497]
[2498]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 11118--11118
 []\T1/pcr/m/n/9 rcond(x2 <- cbind(x1, 2:11))# practically 0, since x2 does not
 have full rank[] 
[2499]
[2500]
Underfull \hbox (badness 2150) in paragraph at lines 11284--11292
\T1/ptm/m/n/10 dices, if not []\T1/pcr/m/n/10 symmetric [][]sample.int[][][](nr
ow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/pcr/m/n/10 rand.x []\T1/ptm/m/n
/10 is not
[2501]
[2502]
Underfull \hbox (badness 5147) in paragraph at lines 11441--11444
[]\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 SchurFactorization[][][][]\T1/ptm/m
/n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1/pt
m/m/n/10 , by class
[2503]
Underfull \hbox (badness 3179) in paragraph at lines 11456--11459
[]\T1/pcr/m/n/10 signature(from = "Schur", logarithm = "logical")[]\T1/ptm/m/n/
10 : com-putes
[2504]
[2505]
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 []    \T1/pcr/m/n/9 all.equal(e1, e3[order(Mod(e3), decreasing = TRUE)], toler
ance = 1e-13)[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11630 \aliasA{solve}{solve-methods}{solve}
                                            
[2506]
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 []\T1/pcr/m/n/10 solve(a, b, system = c("A", "LDLt", "LD", "DLt", "L", "Lt", "
D", "P", "Pt"), ...)[] 
Underfull \hbox (badness 1147) in paragraph at lines 11766--11772
[]\T1/ptm/m/n/10 a vec-tor, [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/
n/10 , ma-trix, or [][][]\T1/pcr/m/n/10 Matrix[][][] []\T1/ptm/m/n/10 sat-is-fy
-ing []\T1/pcr/m/n/10 NROW(b) ==
Underfull \hbox (badness 3460) in paragraph at lines 11816--11821
[]\T1/ptm/m/n/10 Methods for dense []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are buil
t on 14 LA-PACK rou-tines: class []\T1/pcr/m/n/10 d..Matrix[]\T1/ptm/m/n/10 , w
here
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[]\T1/ptm/m/n/10 Methods for sparse []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are bui
lt on CXS-parse rou-tines []\T1/pcr/m/n/10 cs_lsolve[]\T1/ptm/m/n/10 , []\T1/pc
r/m/n/10 cs_usolve[]\T1/ptm/m/n/10 , and
[2507]
Overfull \hbox (52.98038pt too wide) in paragraph at lines 11889--11889
 []\T1/pcr/m/n/9 image(ia0 <- solve(a, tol = 0)) # checker board, dense [but re
ally, a is singular!][] 
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 []  \T1/pcr/m/n/9 ## Fails on 32-bit [Fedora 19, R 3.0.2] from Matrix 1.1-0 on
 [FIXME ??] only[] 
[2508]
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[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu
la and data frame
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 []    \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveC
sparse)[] 
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 []    \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveC
sparse,[] 
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[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
Underfull \hbox (badness 10000) in paragraph at lines 11952--11955
[]\T1/ptm/m/n/10 character string or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or 
(co-er-ca-ble to)
Underfull \hbox (badness 2591) in paragraph at lines 11952--11955
[]\T1/pcr/m/n/10 "[][]sparseMatrix[][][]"[]\T1/ptm/m/n/10 , spec-i-fy-ing the c
on-trasts to be ap-plied to the
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[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
Underfull \hbox (badness 2828) in paragraph at lines 11963--11967
[]\T1/pcr/m/n/10 sparse.model.matrix []\T1/ptm/m/n/10 has been changed to []\T1
/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , 2010-07, for
[2509]
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
Underfull \hbox (badness 3291) in paragraph at lines 12005--12010
[]\T1/pcr/m/n/10 model.Matrix(sparse = TRUE) []\T1/ptm/m/n/10 from pack-age [][
]\T1/ptm/b/n/10 Ma-trix-Mod-els[][] \T1/ptm/m/n/10 may be nowa-days be
Underfull \hbox (badness 2073) in paragraph at lines 12005--12010
\T1/ptm/m/n/10 prefer-able to []\T1/pcr/m/n/10 sparse.model.matrix[]\T1/ptm/m/n
/10 , as []\T1/pcr/m/n/10 model.Matrix []\T1/ptm/m/n/10 re-turns an ob-ject of 
class
[2510]
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0, 0),[] 
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop=FALSE),"CsparseMatrix"), dim(M)
 == c(3, 0),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12060--12060
 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f12, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0,12),[] 
[2511]
Underfull \hbox (badness 2961) in paragraph at lines 12122--12125
[]\T1/pcr/m/n/10 signature(from = "sparseLU", logarithm = "logical")[]\T1/ptm/m
/n/10 : com-
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 []\T1/pcr/m/n/9 A <- as(readMM(system.file("external", "pores_1.mtx", package 
= "Matrix")),[] 
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
[2512]
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(dn[1L
], list(NULL)),[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 12186--12186
 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
Underfull \hbox (badness 10000) in paragraph at lines 12211--12213
[]\T1/ptm/m/n/10 This in-ter-face is rec-om-mended over di-rect con-struc-tion 
via calls such as
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12218--12218
 []             \T1/pcr/m/n/10 symmetric = FALSE, triangular = FALSE, index1 = 
TRUE,[] 
[2513]
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\T1/ptm/m/n/10 of the sparse ma-trix re-sult, i.e., spec-i-fy-ing one of the vi
r-tual classes
[2514]
Underfull \hbox (badness 10000) in paragraph at lines 12345--12348
[]\T1/ptm/m/n/10 The stan-dard \T1/phv/m/n/10 R [][][]\T1/pcr/m/n/10 xtabs[][][
](*, sparse=TRUE)[]\T1/ptm/m/n/10 , for sparse ta-bles and
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12358--12358
 []\T1/pcr/m/n/9 (A <- sparseMatrix(i, j, x = x))                    ##  8 x 10
 "dgCMatrix"[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12362--12362
 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12363--12363
 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12368--12368
 []\T1/pcr/m/n/9 (AA <- sparseMatrix(c(1,3:8), c(2,9,6:10), x = 7 * (1:7), dims
 = c(10,20)))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12371--12371
 []\T1/pcr/m/n/9 ## i, j and x can be in an arbitrary order, as long as they ar
e consistent[] 
[2515]
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 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted
 if necessary:[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 12395--12395
 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 
1:6, dimnames = dn)[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12421--12421
 []\T1/pcr/m/n/9 ## pointers example in converting from other sparse matrix rep
resentations.[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 12424--12424
 []   \T1/pcr/m/n/9 nzchar(dfil <- system.file("extdata", "rua_32_ax.rua", pack
age = "SparseM"))) {[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12426--12426
 []  \T1/pcr/m/n/9 XX <- sparseMatrix(j = X@ja, p = X@ia - 1L, x = X@ra, dims =
 X@dimension)[] 
[2516]
Underfull \hbox (badness 6842) in paragraph at lines 12516--12519
[]\T1/pcr/m/n/10 (x = "sparseMatrix", logarithm=TRUE)[]\T1/ptm/m/n/10 : [][][]\
T1/pcr/m/n/10 determinant[][][]() []\T1/ptm/m/n/10 meth-ods
Underfull \hbox (badness 10000) in paragraph at lines 12551--12555
[][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/10 , and its ref-er-ences,
 such as [][][]\T1/pcr/m/n/10 xtabs[][][](*, sparse=TRUE)[]\T1/ptm/m/n/10 , or
[2517]
[2518]
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[]\T1/pcr/m/n/10 signature(from = "sparseQR", logarithm = "logical")[]\T1/ptm/m
/n/10 : com-
[2519]
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[]\T1/ptm/m/n/10 The many aux-il-iary func-tions for QR fac-tor-iza-tions: [][]
[]\T1/pcr/m/n/10 qr.Q[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.R[][][][]
\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.X[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 qr.coef[][][][]\T1/ptm/m/n/10 ,
[2520]
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 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m
atrix"), ...)[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 12861--12861
 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(m, m), Dimnames = c(dn[1L
], list(NULL)),[] 
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 []              \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list(
NULL), dn[2L]),[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2521]
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 []    \T1/pcr/m/n/9 ae2(qrc <- qr.coef  (qr.A, b), with(e.qr.A, solve(R1 %*% P
2., t(qrQ)) %*% b))[] 
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[]\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case
 a
[2522]
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[]\T1/ptm/m/n/10 Sparse Vec-tor Classes: The vir-tual mother class []\T1/pcr/m/
n/10 "sparseVector" []\T1/ptm/m/n/10 has the five ac-
Underfull \hbox (badness 3679) in paragraph at lines 13039--13045
\T1/ptm/m/n/10 tual daugh-ter classes []\T1/pcr/m/n/10 "dsparseVector"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "isparseVector"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "
lsparseVector"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 13084--13087
[]\T1/pcr/m/n/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m/
n/10 co-erces sparse
[2523]
Underfull \hbox (badness 10000) in paragraph at lines 13118--13123
[]\T1/pcr/m/n/10 (x = "nsparseVector")[]\T1/ptm/m/n/10 : re-turn [][][]\T1/pcr/
m/n/10 logical[][][] []\T1/ptm/m/n/10 or
Underfull \hbox (badness 10000) in paragraph at lines 13136--13138
[][][]\T1/pcr/m/n/10 sparseVector[][][]() []\T1/ptm/m/n/10 for friendly con-str
uc-tion of sparse vec-tors (apart from []\T1/pcr/m/n/10 as(*,
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[2525]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 13232--13232
 []\T1/pcr/m/n/10 spMatrix(nrow, ncol, i = integer(0L), j = integer(0L), x = do
uble(0L)) 
Underfull \hbox (badness 2310) in paragraph at lines 13259--13265
[][][]\T1/pcr/m/n/10 Matrix[][][](*, sparse=TRUE) []\T1/ptm/m/n/10 for the more
 usual con-struc-tor of such ma-tri-ces. Then,
[2526]
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}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.13311 ...\Rdash{}}{subassign-methods}{[<.Rdash.}
                                                  
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[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2527]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has b
een already used, duplicate ignored
<to be read again> 
                   \relax 
l.13445 \aliasA{[}{subscript-methods}{[}
                                        
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\T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 triangularMatrix[][][][]\T1/ptm/m/n
/10 , and, e.g., [][][]\T1/pcr/m/n/10 dsyMatrix[][][] []\T1/ptm/m/n/10 for nu-m
eric \T1/ptm/m/it/10 dense \T1/ptm/m/n/10 ma-tri-ces, or
[2529]
Underfull \hbox (badness 2057) in paragraph at lines 13656--13658
[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
Underfull \hbox (badness 6396) in paragraph at lines 13665--13669
[]\T1/pcr/m/n/10 symmpart(x) []\T1/ptm/m/n/10 re-turns a sym-met-ric ma-trix, i
n-her-it-ing from [][][]\T1/pcr/m/n/10 symmetricMatrix[][][] []\T1/ptm/m/n/10 o
r
[2530]
Underfull \hbox (badness 7722) in paragraph at lines 13670--13675
[]\T1/pcr/m/n/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-trix
, in-her-it-ing from [][][]\T1/pcr/m/n/10 generalMatrix[][][][]\T1/ptm/m/n/10 ,
[2531]
Underfull \hbox (badness 6641) in paragraph at lines 13747--13750
[]\T1/ptm/m/n/10 Currently, [][][]\T1/pcr/m/n/10 Schur[][][][]\T1/ptm/m/n/10 , 
[][][]\T1/pcr/m/n/10 isSymmetric[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 as
() []\T1/ptm/m/n/10 (i.e. [][][]\T1/pcr/m/n/10 coerce[][][][]\T1/ptm/m/n/10 ) h
ave meth-ods with
Underfull \hbox (badness 5133) in paragraph at lines 13783--13787
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 "TsparseMatrix" []\T1/ptm/m/n/10 class is
 the vir-tual class of all sparse ma-tri-ces coded in
Underfull \hbox (badness 2818) in paragraph at lines 13783--13787
\T1/ptm/m/n/10 triplet form. Since it is a vir-tual class, no ob-jects may be c
re-ated from it. See
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[2533]
Underfull \hbox (badness 1668) in paragraph at lines 13910--13913
[][][]\T1/pcr/m/n/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 unpac
k[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/pcr/m/n/10 "[][]pac
kedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes
[2534]
Underfull \hbox (badness 10000) in paragraph at lines 14021--14027
[]\T1/ptm/m/n/10 GAL lat-tice file `\T1/pcr/m/n/10 usc_q.GAL\T1/ptm/m/n/10 ' (r
e-trieved in 2008 from
[2535]
[2536]
[2537]) (./boot-pkg.tex
[2538]
Chapter 18.
[2539]
[2540]
[2541]
[2542]
[2543]
[2544]
[2545]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 532--532
 []\T1/pcr/m/n/10 boot(data, statistic, R, sim = "ordinary", stype = c("i", "f"
, "w"), 
[2546]
Underfull \hbox (badness 1325) in paragraph at lines 570--577
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sim-u-la-tion r
e-quired. Pos-si-ble
Underfull \hbox (badness 1275) in paragraph at lines 585--590
[]\T1/ptm/m/n/10 An in-te-ger vec-tor or fac-tor spec-i-fy-ing the strata for m
ulti-sample prob-
[2547]
[2548]
[2549]
Underfull \hbox (badness 1881) in paragraph at lines 826--828
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 6493) in paragraph at lines 853--857
[][][]\T1/pcr/m/n/10 boot.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bo
ot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 censboot[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 empinf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 j
ack.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 tilt.boot[][][][]\T
1/ptm/m/n/10 ,
[2550]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 887--887
 []\T1/pcr/m/n/9 nuke.lm <- glm(log(cost) ~ date+log(cap)+ne+ct+log(cum.n)+pt, 
data = nuke)[] 
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[2552]
[2553]
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[]\T1/ptm/m/n/10 If sup-plied, a value to be used as an es-ti-mate of the vari-
ance of the
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\T1/ptm/m/n/10 statis-tic for the nor-mal ap-prox-i-ma-tion and stu-den-tized i
n-ter-vals. If it
Underfull \hbox (badness 2343) in paragraph at lines 1084--1093
\T1/ptm/m/n/10 is not sup-plied and []\T1/pcr/m/n/10 length(index) []\T1/ptm/m/
n/10 is 2 then []\T1/pcr/m/n/10 var.t0 []\T1/ptm/m/n/10 de-faults to
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[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2554]
[2555]
[2556]
[2557]
Underfull \hbox (badness 1571) in paragraph at lines 1445--1447
[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2558]
[2559]
[2560]
[2561]
[2562]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1738--1738
 []\T1/pcr/m/n/10 censboot(data, statistic, R, F.surv, G.surv, strata = matrix(
1,n,2), 
[2563]
[2564]
[2565]
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[2566]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 2013--2013
 []\T1/pcr/m/n/9 mel.cox <- coxph(Surv(time, status == 1) ~ ns(thickness, df=4)
 + strata(ulcer),[] 
[2567]
Underfull \hbox (badness 6268) in paragraph at lines 2084--2086
[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2568]
[2569]
[2570]
Underfull \hbox (badness 1565) in paragraph at lines 2338--2343
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2571]
Underfull \hbox (badness 4595) in paragraph at lines 2363--2368
\T1/ptm/m/n/10 are passed un-changed ev-ery time []\T1/pcr/m/n/10 boot.out$stat
istic []\T1/ptm/m/n/10 is called.
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[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 2057) in paragraph at lines 2440--2441
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 empinf[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 k3.linear[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 linear.approx[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
saddle.distn[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.spline[][][][]
\T1/ptm/m/n/10 ,
[2572]
[2573]
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[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/pcr/m
/n/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 n []\T1/ptm/m/n/1
0 is the sam-ple
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\T1/ptm/m/n/10 size, if []\T1/pcr/m/n/10 unbiased []\T1/ptm/m/n/10 is []\T1/pcr
/m/n/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/pcr/m/n/10 1/n []\T
1/ptm/m/n/10 is used. This is mul-ti-plied by
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[2575]
[2576]
[2577]
[2578]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2895--2895
 []\T1/pcr/m/n/10 EEF.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t 
= 25, 
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 []\T1/pcr/m/n/10 EL.profile(y, tmin  =  min(y) + 0.1, tmax = max(y) - 0.1, n.t
  =  25,[] 
[2579]
[2580]
[2581]
Underfull \hbox (badness 3861) in paragraph at lines 3105--3108
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.arr
ay[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.ci[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 control[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 jack
.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 linear.approx[][][][]\
T1/ptm/m/n/10 ,
[2582]
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 []\T1/pcr/m/n/10 envelope(boot.out = NULL, mat = NULL, level = 0.95, index = 1
:ncol(mat)) 
[2583]
[2584]
[2585]
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 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
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[2587]
[2588]
[2589]
[2590]
[2591]
[2592]
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 []             \T1/pcr/m/n/10 t = boot.out$t[, index], w = NULL, def = TRUE, q
 = NULL)[] 
[2593]
[2594]
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 []\T1/pcr/m/n/9 grav.p <- imp.prob(grav.tilt.boot, w = grav.w, index = 3, t0 =
 grav.z0[3])[] 
[2595]
[2596]
[2597]
[2598]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4259--4259
 []\T1/pcr/m/n/9 #  To draw the jackknife-after-bootstrap plot for the head siz
e data as in 
[2599]
[2600]
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[]\T1/ptm/m/n/10 The in-dex of the vari-able of in-ter-est within the out-put o
f
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\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is sup-plied but nei-the
r []\T1/pcr/m/n/10 t []\T1/ptm/m/n/10 nor []\T1/pcr/m/n/10 L []\T1/ptm/m/n/10 a
re sup-plied then []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is set to
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[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
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[2611]
[2612]
[2613]
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[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
Underfull \hbox (badness 1668) in paragraph at lines 5238--5241
\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2614]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5317--5317
 []\T1/pcr/m/n/9 grav.boot <- boot(grav1, grav.fun, R = 499, stype = "w", strat
a = grav1[, 2])[] 
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[2616]
[2617]
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[2621]
[2622]
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 []\T1/pcr/m/n/9 city.sp1$spa[1] <- jacobian(city, 1.25, city.sp1$zeta.hat) * c
ity.sp1$spa[1][] 
[2623]
Underfull \hbox (badness 1127) in paragraph at lines 5988--6006
[]\T1/ptm/m/n/10 etc. un-til a point is found with a cdf ap-prox-i-ma-tion less
 than []\T1/pcr/m/n/10 min(alpha)/10[]\T1/ptm/m/n/10 , then
[2624]
Underfull \hbox (badness 2837) in paragraph at lines 6021--6024
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/pcr/m/n/10 "s
addle.distn"[]\T1/ptm/m/n/10 . See the help file for
[2625]
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[2627]
[2628]
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 []\T1/pcr/m/n/9 # This example is taken from Exercise 7.5 of Gill, Murray and 
Wright (1991). 
[2629]
[2630]
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 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
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 []\T1/pcr/m/n/9 # value of the test statistic 1.84.  In the book exponential t
ilting was used[] 
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[2632]
[2633]
Underfull \hbox (badness 1596) in paragraph at lines 6742--6746
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2634]
[2635]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6902--6902
 []                        \T1/pcr/m/n/9 stype = "i", sim = "balanced", alpha =
 c(0.05, 0.95),[] 
[2636]
[2637]
[2638]
[2639]
[2640]
[2641]
[2642]
[2643]) (./class-pkg.tex
[2644]
Chapter 19.
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[2646]
[2647]
[2648]
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 []    \T1/pcr/m/n/9 alpha = list(seq(0.05, 0, length.out = 1e4), seq(0.02, 0, 
length.out = 1e5)),[] 
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 []    \T1/pcr/m/n/9 radii = list(seq(8, 1, length.out = 1e4), seq(4, 1, length
.out = 1e5)))[] 
[2659]
[2660]) (./cluster-pkg.tex
Chapter 20.
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[2662]
[2663]
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 []  \T1/pcr/m/n/9 all.equal(a.wgt [iC], agnes(d.vr, method="flexible", par.met
hod = 0.5)[iC])   ,[] 
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 []  \T1/pcr/m/n/9 all.equal(a.sing[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, -.5))[iC]),[] 
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 []  \T1/pcr/m/n/9 all.equal(a.comp[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, +.5))[iC]))[] 
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[2666] [2667]
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 []           \T1/pcr/m/n/10 col = c(2, 0), border = 0, axes = TRUE, frame.plot
 = axes,[] 
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 []           \T1/pcr/m/n/10 yaxRight = fromLeft, y.mar = 2.4 + max.strlen/2.5,
 ...)[] 
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[2669]
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 []      \T1/pcr/m/n/10 keep.data = medoids.x, rngR = FALSE, pamLike = FALSE, c
orrect.d = TRUE)[] 
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[2671]
[2672]
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[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 clara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\
T1/ptm/m/n/10 ,
[2673]
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 []\T1/pcr/m/n/9 ## those that are not always in same cluster (5 out of 3000 fo
r this seed):[] 
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[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2674]
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 []     \T1/pcr/m/n/10 arrowArgs = list(col="red3", length=1/16, angle=90, code
=3), ...)[] 
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[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
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[]\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in
 2012,
[2676]
Underfull \hbox (badness 2503) in paragraph at lines 1092--1096
[]\T1/ptm/m/n/10 Per Broberg (2006). SAGx: Sta-tis-ti-cal Anal-y-sis of the Gen
eChip. R pack-age ver-
[2677]
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 []        \T1/pcr/m/n/9 sapply(mets, function(M) maxSE(fk, sk, method = M, SE.
factor = SEf)))[] 
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 []\T1/pcr/m/n/9 ## You can manually set it before running this :    doExtras <
- TRUE  # or  FALSE[] 
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[2678]
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 []\T1/pcr/m/n/9 plot(gsP.Z, main = "clusGap(<iid_rnorm_p=3>)  ==> k = 1  clust
er is optimal")[] 
Underfull \hbox (badness 4144) in paragraph at lines 1205--1209
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 nor a []\T1/pcr/m/n/10 data []\T1/ptm/m/n/10 
com-po-nent, e.g., for
[2679]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 1281--1281
 []          \T1/pcr/m/n/10 col.clus = if(color) c(2, 4, 6, 3) else 5, cex = 1,
 cex.txt = cex,[] 
Overfull \hbox (72.78088pt too wide) in paragraph at lines 1287--1287
 []             \T1/pcr/m/n/10 round(100 * var.dec, digits = 2), "% of the poin
t variability."),[] 
[2680]
[2681]
[2682]
Underfull \hbox (badness 10000) in paragraph at lines 1474--1477
Underfull \hbox (badness 10000) in paragraph at lines 1488--1492
[][][]\T1/pcr/m/n/10 princomp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cmds
cale[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 daisy[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cov.mve[][][
][]\T1/ptm/m/n/10 ,
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1512--1512
 []\T1/pcr/m/n/9 clusplot(pamv, col.p = votes.clus, labels = 4)# color points a
nd label ellipses[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1522--1522
 []  \T1/pcr/m/n/9 clusplot(votes.diss, votes.clus, diss = TRUE, labels = 5)# i
dent. only points[] 
[2683]
Underfull \hbox (badness 5741) in paragraph at lines 1562--1565
[]\T1/pcr/m/n/10 coefHier() []\T1/ptm/m/n/10 di-rectly in-ter-faces to the un-d
er-ly-ing C code, and ``proves'' that \T1/ptm/m/it/10 only
[2684]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1631--1631
 []      \T1/pcr/m/n/10 warnBin = warnType, warnAsym = warnType, warnConst = wa
rnType,[] 
[2685]
Underfull \hbox (badness 1552) in paragraph at lines 1680--1682
[]\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/pcr/m/n
/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , se
e
Underfull \hbox (badness 1629) in paragraph at lines 1694--1698
[]\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault 
\T1/ptm/m/n/10 for all nu-meric
Underfull \hbox (badness 3746) in paragraph at lines 1694--1698
\T1/ptm/m/n/10 (incl []\T1/pcr/m/n/10 integer[]\T1/ptm/m/n/10 ) columns of []\T
1/pcr/m/n/10 x[]\T1/ptm/m/n/10 , aka []\T1/pcr/m/n/10 "I" []\T1/ptm/m/n/10 in r
e-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , see
[2686]
Underfull \hbox (badness 1540) in paragraph at lines 1769--1777
\T1/ptm/m/n/10 In other words, $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 is a weigh
ted mean of $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 with weights $\OML/cmm/m/it/1
0 w[]^^N[]$\T1/ptm/m/n/10 , where $\OML/cmm/m/it/10 w[]$[]\T1/pcr/m/n/10 =
[2687]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1856--1856
 []\T1/pcr/m/n/9 ## Example 2 in reference, extended  ---  different ways of "m
ixed" / "gower":[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 1860--1860
 []\T1/pcr/m/n/9 summary(d0    <- daisy(flower))  # -> the first 3 {0,1} treate
d as *N*ominal[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 1861--1861
 []\T1/pcr/m/n/9 summary(dS123 <- daisy(flower,  type = list(symm = 1:3))) # fi
rst 3 treated as *S*ymmetric[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1862--1862
 []\T1/pcr/m/n/9 stopifnot(dS123 == d0) # i.e.,  *S*ymmetric <==> *N*ominal {fo
r 2-level factor}[] 
Overfull \hbox (106.98032pt too wide) in paragraph at lines 1866--1866
 []\T1/pcr/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated *
A*symmetric binary (w/ warning)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1868--1868
 []\T1/pcr/m/n/9 summary(dA13 <- daisy(flower, type = list(asymm = c(1, 3), ord
ratio = 7)))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1876--1876
 []\T1/pcr/m/n/9 summary(dN <- daisy(Nflow)) # w/ warning: treated binary .. 1:
3 as interval[] 
Overfull \hbox (117.7803pt too wide) in paragraph at lines 1877--1877
 []\T1/pcr/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id
entical to treating them as "N" :[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 1893--1893
 []\T1/pcr/m/n/10 diana(x, diss = inherits(x, "dist"), metric = "euclidean", st
and = FALSE, 
[2688]
[2689]
[2690]
[2691]
[2692]
Underfull \hbox (badness 10000) in paragraph at lines 2212--2215
Underfull \hbox (badness 3179) in paragraph at lines 2223--2229
[][][]\T1/pcr/m/n/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also the
 [][][]\T1/pcr/m/n/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/pcr/m/n/1
0 ellipsoid []\T1/ptm/m/n/10 ob-jects.
[2693]
[2694]
Underfull \hbox (badness 10000) in paragraph at lines 2380--2383
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 fanny.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2695]
Underfull \hbox (badness 1292) in paragraph at lines 2448--2451
[]\T1/ptm/m/n/10 named vec-tor with []\T1/pcr/m/n/10 iterations[]\T1/ptm/m/n/10
 , the num-ber of it-er-a-tions needed and
[2696]
Underfull \hbox (badness 6675) in paragraph at lines 2457--2459
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
Underfull \hbox (badness 10000) in paragraph at lines 2480--2483
[][][]\T1/pcr/m/n/10 fanny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.f
anny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dissimilarity.object[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2697]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2555--2555
 []                           \T1/pcr/m/n/9 "4" = "red", "5" = "blue")[levels(f
lowerN$color)][] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 2556--2556
 []\T1/pcr/m/n/9 levels(flowerN$soil)  <- c("1" = "dry", "2" = "normal", "3" = 
"wet")[levels(flowerN$soil)][] 
[2698]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 2619--2619
 []\T1/pcr/m/n/10 medoids(x, clustering, diss = inherits(x, "dist"), USE.NAMES 
= FALSE, ...) 
[2699]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 2666--2666
 []  \T1/pcr/m/n/9 stopifnot(length(cl.k) == nrow(votes.repub), 1 <= cl.k, cl.k
 <= k, table(cl.k) >= 2)[] 
[2700]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2771--2771
 []\T1/pcr/m/n/9 ## One place to see if/how error messages are *translated* (to
 \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 de\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 / \TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 pl\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ):[] 
[2701]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 2850--2850
 []    \T1/pcr/m/n/10 variant = c("original", "o_1", "o_2", "f_3", "f_4", "f_5"
, "faster"),[] 
[2702]
[2703]
[2704]
[2705]
Overfull \hbox (85.38034pt too wide) in paragraph at lines 3078--3078
 []\T1/pcr/m/n/9 ## use obs. 1 & 16 as starting medoids -- same result (for see
d above, *and* typically) :[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3080--3080
 []\T1/pcr/m/n/9 ## no _build_ *and* no _swap_ phase: just cluster all obs. aro
und (1, 16):[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 3083--3083
 []\T1/pcr/m/n/9 keep_nms <- setdiff(names(pamx), c("call", "objective"))# .$ob
jective["build"] differ[] 
[2706]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3187--3187
 []\T1/pcr/m/n/9 axis(1, k.best, paste("best",k.best,sep="\n"), col = "red", co
l.axis = "red")[] 
[2707]
[2708]
[2709]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 3381--3381
 []           \T1/pcr/m/n/10 sub = paste("Agglomerative Coefficient = ",round(x
$ac, digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3382--3382
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2710]
Underfull \hbox (badness 10000) in paragraph at lines 3449--3452
[]\T1/ptm/m/n/10 For the den-dro-gram, more flex-i-bil-ity than via []\T1/pcr/m
/n/10 pltree() []\T1/ptm/m/n/10 is pro-vided by []\T1/pcr/m/n/10 dg <-
[2711]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 3499--3499
 []           \T1/pcr/m/n/10 sub = paste("Divisive Coefficient = ", round(x$dc,
 digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3500--3500
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2712]
[2713]
[2714]
Underfull \hbox (badness 10000) in paragraph at lines 3685--3688
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 com-po-nent as for [][][]\T1/pcr/m/n/10 pam[]
[][](*,
Underfull \hbox (badness 1448) in paragraph at lines 3685--3688
\T1/pcr/m/n/10 keep.diss=FALSE)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dist []\T1/p
tm/m/n/10 must be the dis-sim-i-lar-ity if a clus-plot is
[2715]
Underfull \hbox (badness 10000) in paragraph at lines 3748--3753
[][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 clusplot.de
fault[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 ,
[2716]
Underfull \hbox (badness 1748) in paragraph at lines 3810--3815
\T1/ptm/m/n/10 dis-patches to [][][]\T1/pcr/m/n/10 plot.hclust[][][](..)[]\T1/p
tm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/pcr/m/n/10 xx 
<-
Underfull \hbox (badness 6268) in paragraph at lines 3822--3825
[][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 agnes.o
bject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 diana.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/1
0 hclust[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 plot.agnes[][][][]\T1/ptm/m/n/10 ,
[2717]
Underfull \hbox (badness 10000) in paragraph at lines 3883--3885
[]\T1/ptm/m/n/10 Available as `\T1/pcr/m/n/10 pluton.dat\T1/ptm/m/n/10 ' from t
he archive of the Uni-ver-sity of Antwer-pen,
[2718]
[2719]
Underfull \hbox (badness 10000) in paragraph at lines 4002--4005
[][][]\T1/pcr/m/n/10 summary.agnes[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ag
nes.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
[2720]
Underfull \hbox (badness 10000) in paragraph at lines 4033--4036
[][][]\T1/pcr/m/n/10 summary.clara[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cl
ara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
[2721]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 4086--4086
 []      \T1/pcr/m/n/10 digits = getOption("digits"), justify = "none", right =
 TRUE, ...)[] 
Underfull \hbox (badness 2035) in paragraph at lines 4097--4099
[]\T1/ptm/m/n/10 a []\T1/pcr/m/n/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a
 []\T1/pcr/m/n/10 summary.dissimilarity []\T1/ptm/m/n/10 one for
[2722]
[2723]
[2724]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 4290--4290
 []     \T1/pcr/m/n/10 main = NULL, sub = NULL, xlab = expression("Silhouette w
idth "* s[i]),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 4292--4292
 []     \T1/pcr/m/n/10 cex.names = par("cex.axis"), do.n.k = TRUE, do.clus.stat
 = TRUE, ...)[] 
[2725]
[2726]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 4434--4434
 []\T1/pcr/m/n/9 plot(si, col = c("red", "green", "blue", "purple"))# with clus
ter-wise coloring[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4443--4443
 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4445--4445
 []      \T1/pcr/m/n/9 outer = TRUE, font = par("font.main"), cex = par("cex.ma
in")); frame()[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 4448--4448
 []\T1/pcr/m/n/9 c6 <- c("tomato", "forest green", "dark blue", "purple2", "gol
denrod4", "gray20")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4450--4450
 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE,[] 
[2727]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 4457--4457
 []\T1/pcr/m/n/9 str(xc1k <- xclara[ sample(nrow(xclara), size = 1000) ,]) # ro
wnames == indices[] 
[2728]
[2729]
[2730]
[2731]
[2732]
[2733]
Underfull \hbox (badness 10000) in paragraph at lines 4828--4834
[]\T1/ptm/m/n/10 Our ver-sion of the []\T1/pcr/m/n/10 xclara []\T1/ptm/m/n/10 i
s slightly more rounded than the one from
Underfull \hbox (badness 10000) in paragraph at lines 4844--4846
[]\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file 
`\T1/pcr/m/n/10 xclara.dat\T1/ptm/m/n/10 ' in side
Overfull \hbox (52.98038pt too wide) in paragraph at lines 4857--4857
 []\T1/pcr/m/n/9 ## Visualization: Assuming groups are defined as {1:1000}, {10
01:2000}, {2001:3000} 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 4859--4859
 []\T1/pcr/m/n/9 p.ID <- c(78, 1411, 2535) ## PAM\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 
s medoid indices  == pam(xclara, 3)$id.med[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4869--4869
 [] \T1/pcr/m/n/9 ## We see 3 + 2 + 2 = 7  clear "outlier"s  or "wrong group" o
bservations:[] 
[2734]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 4873--4873
 [] \T1/pcr/m/n/9 ## Apart from these, what are the robust ranges of indices? -
- Robust range:[] 
[2735]) (./codetools-pkg.tex
[2736]
Chapter 21.
Overfull \hbox (24.78088pt too wide) in paragraph at lines 16--16
 []           \T1/pcr/m/n/10 suppressParamUnused = !all, suppressFundefMismatch
 = FALSE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 17--17
 []           \T1/pcr/m/n/10 suppressLocalUnused = FALSE, suppressNoLocalFun = 
!all,[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 18--18
 []           \T1/pcr/m/n/10 skipWith = FALSE, suppressUndefined = dfltSuppress
Undefined,[] 
[2737]
Underfull \hbox (badness 10000) in paragraph at lines 65--70
[]\T1/pcr/m/n/10 checkUsageEnv []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 checkUsage
Package []\T1/ptm/m/n/10 are con-ve-nience func-tions that ap-ply
[2738]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 118--118
 []\T1/pcr/m/n/10 makeConstantFolder(..., leaf, handler, call, exit, isLocal, f
oldable,[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 121--121
 []\T1/pcr/m/n/10 makeUsageCollector(fun, ..., name, enterLocal, enterGlobal, e
nterInternal,[] 
[2739]
[2740]
[2741]) (./foreign-pkg.tex
[2742]
Chapter 22.
Underfull \hbox (badness 10000) in paragraph at lines 33--37
[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
Underfull \hbox (badness 10000) in paragraph at lines 33--37
\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][]$\T1/p
cr/m/n/10 https : / / support .
Underfull \hbox (badness 10000) in paragraph at lines 33--37
\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
Overfull \hbox (74.28088pt too wide) in paragraph at lines 33--37
\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2743]
Underfull \hbox (badness 1231) in paragraph at lines 67--70
[]\T1/ptm/m/n/10 a char-ac-ter string with the name of the ARFF file to read fr
om, or a
[2744]
[2745]
Underfull \hbox (badness 3601) in paragraph at lines 234--242
[]\T1/ptm/m/n/10 A data frame with at-tributes. These will in-clude []\T1/pcr/m
/n/10 "datalabel"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "time.stamp"[]\T1/ptm/m/n/
10 ,
[2746]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 292--292
 []\T1/pcr/m/n/10 read.epiinfo(file, read.deleted = FALSE, guess.broken.dates =
 FALSE, 
[2747]
[2748]
[2749]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 458--458
 []          \T1/pcr/m/n/10 trim_values = TRUE, reencode = NA, use.missings = t
o.data.frame,[] 
[2750]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 459--459
 []          \T1/pcr/m/n/10 sub = ".", add.undeclared.levels = c("sort", "appen
d", "no"),[] 
Underfull \hbox (badness 2846) in paragraph at lines 502--511
[]\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif-
fer-ent lev-
Underfull \hbox (badness 3746) in paragraph at lines 502--511
\T1/ptm/m/n/10 els. For []\T1/pcr/m/n/10 "append" []\T1/ptm/m/n/10 (the de-faul
t), the first orig-i-nal value la-bel is
Underfull \hbox (badness 2269) in paragraph at lines 502--511
\T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/p
cr/m/n/10 paste0(label,
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[]\T1/ptm/m/n/10 character: the in-fix used for la-bels of fac-tor lev-els with
 du-
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\T1/ptm/m/n/10 pli-cated value la-bels in SPSS (de-fault []\T1/pcr/m/n/10 "_dup
licated_"[]\T1/ptm/m/n/10 ) if
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[]\T1/ptm/m/n/10 URL [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / 
en-[]us / windows / win32 / intl /
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[]\T1/ptm/m/n/10 There may be at-tributes []\T1/pcr/m/n/10 "label.table" []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 "variable.labels"[]\T1/ptm/m/n/10 . At-tribute
[2752]
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 []\T1/pcr/m/n/9 ### hence may need some special treatment with appropriate arg
ument settings.[] 
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 []\T1/pcr/m/n/9 ### Expect lots of warnings as value labels (corresponding to 
R factor labels) are uncomplete,[] 
[2753]
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 []\T1/pcr/m/n/9 ## Long Strings (>255 chars) are imported in consecutive separ
ate variables[] 
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 []\T1/pcr/m/n/9 cat.long.string <- function(x, w=70) cat(paste(strwrap(x, widt
h=w), "\n"))[] 
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 []\T1/pcr/m/n/9 long.string <- apply(x[,c("string_500", "STRIN0")], 1, paste, 
collapse="")[] 
[2754]
[2755]
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 []\T1/pcr/m/n/9 iris.s <- read.systat(system.file("files/Iris.syd", package="f
oreign")[1])[] 
[2756]
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[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
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\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][]$\T1/p
cr/m/n/10 https : / / support .
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\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
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\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2757]
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 []  \T1/pcr/m/n/10 data.restore(file, print = FALSE, verbose = FALSE, env = .G
lobalEnv) 
[2758]
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 []\T1/pcr/m/n/10 write.arff(x, file, eol = "\n", relation = deparse(substitute
(x))) 
[2759]
[2760]
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[][][]$\T1/pcr/m/n/10 https : / / www . clicketyclick . dk / databases / xbase 
/ format / data _ types .
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 []          \T1/pcr/m/n/10 convert.factors = c("labels", "string", "numeric", 
"codes"))[] 
[2761]
[2762]
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[]\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/pcr/m/n/10 foreig
n:::writeForeignStata[]\T1/ptm/m/n/10 ,
[2763]
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 package="SPSS"[]\T1/ptm/m/n/10 , as a sid
e ef-fect, the dec-i-mal in-di-ca-tor is al-ways set by []\T1/pcr/m/n/10 SET
[2764]) (./lattice-pkg.tex
Chapter 23.
[2765]
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\T1/ptm/m/n/10 pro-vide a holis-tic in-tro-duc-tion to the Trel-lis paradigm: [
][]$\T1/pcr/m/n/10 http : / / web . archive . org /
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\T1/pcr/m/n/10 web / 20081020164041 / http : / / cm . bell-[]labs . com / cm / 
ms / departments / sia /
[2766]
[2767]
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 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
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 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.xyplot"),[] 
[2768]
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 []        \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defaul
t.dotplot"),[] 
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 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.barchart"),[] 
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 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.stripplot"),[] 
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 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2769]
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 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.bwplot"),[] 
[2770]
[2771]
[2772]
Underfull \hbox (badness 1221) in paragraph at lines 655--658
[]\T1/ptm/m/n/10 A log-i-cal, or a list con-tain-ing com-po-nents to be used as
 ar-gu-ments to
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[2774]
[2775]
[2776]
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[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the un-used lev-els of 
fac-tors will be
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\T1/ptm/m/n/10 some-times ap-pro-pri-ate to sup-press drop-ping to pre-serve a 
use-ful lay-out.
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[2778]
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[]\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 sho
uld be num-bers be-tween 0 and 1, giv-ing co-or-di-nates
[2779]
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[]\T1/ptm/m/n/10 Logical flag, whether leg-end should have a
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[]\T1/ptm/m/n/10 Space be-tween col-umn blocks, in ad-di-tion to
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[2781]
[2782]
Underfull \hbox (badness 1540) in paragraph at lines 1476--1482
[]\T1/ptm/m/n/10 A list con-tain-ing pos-si-ble ar-gu-ments to [][][]\T1/pcr/m/
n/10 plot.trellis[][][][]\T1/ptm/m/n/10 ,
[2783]
Underfull \hbox (badness 10000) in paragraph at lines 1563--1580
[][][]\T1/pcr/m/n/10 panel.dotplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.superpose[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.loess[][][][]\T1/ptm/m/n/10 ,
[2784]
Underfull \vbox (badness 10000) has occurred while \output is active
[2785]
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 []                  \T1/pcr/m/n/9 text = list(lab = as.character(unique(Orchar
dSprays$rowpos))),[] 
[2786]
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[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/pcr/m/n/10 xyplot[]
[][][]\T1/ptm/m/n/10 , which may pass them on to
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[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
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[]\T1/ptm/m/n/10 style set-tings be-yond the stan-dard []\T1/pcr/m/n/10 col[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1
/ptm/m/n/10 , etc; see
[2787]
Underfull \hbox (badness 10000) in paragraph at lines 1804--1806
[]\T1/ptm/m/n/10 Gabor Grothendieck, Achim Zeileis, Deep-ayan Sarkar and Fe-lix
 An-drews
[2788]
[2789]
[2790]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045
 []            \T1/pcr/m/n/10 auto.key = lattice.getOption("default.args")$auto
.key,[] 
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 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.densitypl
ot"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active
[2791]
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[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fie
d, the value of
Underfull \hbox (badness 1320) in paragraph at lines 2137--2140
[]\T1/pcr/m/n/10 lattice.getOption("histogram.breaks") []\T1/ptm/m/n/10 is firs
t checked. If
[2792]
[2793]
[2794]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 2342--2342
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 2346--2346
 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.qqmath"),[] 
[2795]
[2796]
[2797]
[2798]
[2799]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 2702--2702
 []          \T1/pcr/m/n/10 panel = if (useRaster) lattice.getOption("panel.lev
elplot.raster")[] 
[2800]
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 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.contourpl
ot"),[] 
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[2801]
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[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
Underfull \hbox (badness 3058) in paragraph at lines 2813--2818
[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
[2802]
[2803]
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[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the col-orkey should be
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\T1/ptm/m/n/10 ren-dered as a raster im-age us-ing [][][]\T1/pcr/m/n/10 grid.ra
ster[][][][]\T1/ptm/m/n/10 . See also
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[]\T1/ptm/m/n/10 Logical flag, passed to [][][]\T1/pcr/m/n/10 rasterGrob[][][] 
[]\T1/ptm/m/n/10 when
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[]\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gr
oups[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether raster rep-re-sen-ta-ti
ons should be used,
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\T1/ptm/m/n/10 both for the false color im-age and the color key (if present). 
Ef-
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\T1/ptm/m/n/10 fec-tively, set-ting this to []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n
/10 changes the de-fault panel func-tion from
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[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2804]
[2805]
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 []      \T1/pcr/m/n/10 xlim = if (is.factor(x)) levels(x) else range(x, finite
 = TRUE),[] 
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 []      \T1/pcr/m/n/10 ylim = if (is.factor(y)) levels(y) else range(y, finite
 = TRUE),[] 
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 []      \T1/pcr/m/n/10 zlim = if (is.factor(z)) levels(z) else range(z, finite
 = TRUE),[] 
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 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
cloud"),[] 
[2806]
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 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.wireframe"),[] 
[2807]
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[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
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[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
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[]\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepan
el[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 
groups[]\T1/ptm/m/n/10 ,
[2808]
[2809]
[2810]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3506 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                
[2811]
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 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
splom"),[] 
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 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.parallel"),[] 
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[2813]
[2814]
[2815]
[2816]
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 []\T1/pcr/m/n/10 oneway(formula, data, location=mean, spread=function(x) sqrt(
var(x))) 
[2817]
[2818]
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[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings by
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\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2819]
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 []               \T1/pcr/m/n/10 symbol = palette.colors(palette = "Okabe-Ito")
[c(6, 2, 4, 7, 3, 5, 8)],[] 
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 []               \T1/pcr/m/n/10 region = hcl.colors(14, palette = "YlGnBu", re
v = TRUE),[] 
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 []             \T1/pcr/m/n/10 reference = "gray90", bg = "transparent", fg = "
black",[] 
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 []             \T1/pcr/m/n/10 strip.bg = rep("gray95", 7), strip.fg = rep("gra
y70", 7),[] 
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[2821]
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 []\T1/pcr/m/n/10 trellis.par.set(name, value, ..., theme, warn = TRUE, strict 
= FALSE) 
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[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
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[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
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[]\T1/pcr/m/n/10 theme[]\T1/ptm/m/n/10 ). These are used to mod-ify the cur-ren
t set-tings (ob-tained by
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[]\T1/ptm/m/n/10 The ac-tual list of the com-po-nents in []\T1/pcr/m/n/10 trell
is.settings []\T1/ptm/m/n/10 has not been fi-nal-ized,
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\T1/ptm/m/n/10 so I'm not at-tempt-ing to list them here. The cur-rent value ca
n be ob-tained by
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[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/pcr/m/n/10 col []\T1/ptm/m/n/
10 is used for com-po-nents []\T1/pcr/m/n/10 "plot.symbol"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "plot.line"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "plot.polygon"[
]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "superpose.line"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "super
pose.polygon"[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 col.points
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[]\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , but is used 
only for []\T1/pcr/m/n/10 "plot.symbol" []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 . Sim-i-larly, []\T1/pcr/m/
n/10 col.line []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col []\T1/ptm/m/n/10
 for
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[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 pl
ot.symbol[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 plot.polygon[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 
plot.polygon []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 aspect[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 between[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 grid[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 skip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 p12 <- densityplot( ~ height | voice.part, data = singer, xlab
 = "Height")[] 
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[]\T1/pcr/m/n/10 main[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 page[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 par.strip.text[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 skip
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yscale.co
mponents[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 axis[]\T1/ptm/m/n/10 , []\T1/pcr/m/
n/10 par.settings[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 trellis[]\T1/ptm/m/n/10 ,
 by de-fault plot-ted by []\T1/pcr/m/n/10 print.trellis[]\T1/ptm/m/n/10 .
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[]\T1/pcr/m/n/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gle
s via rect-an-gles. []\T1/pcr/m/n/10 print.shingle []\T1/ptm/m/n/10 and
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[][][]\T1/pcr/m/n/10 Lattice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 draw.
key[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 trellis.par.get[][][][]\T1/ptm
/m/n/10 , and [][][]\T1/pcr/m/n/10 xyplot[][][][]\T1/ptm/m/n/10 , specif-i-call
y the en-try for
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ich.given],[] 
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[2841]
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[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
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[]\T1/pcr/m/n/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on the
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[]\T1/pcr/m/n/10 strip.default []\T1/ptm/m/n/10 is called for its side-effect, 
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bels,[] 
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e"), ...)[] 
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ch.given",[] 
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fix),[] 
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ch.panel",[] 
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fix),[] 
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lumn",[] 
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[]\T1/ptm/m/n/10 variables defin-ing the con-tents of the panel. In the case of
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[]\T1/ptm/m/n/10 an op-tional vec-tor of la-bels as-so-ci-ated with each point.
 De-faults to
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\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 trellis.focus[]\T1/ptm/m/n/10 , the de-faul
t is []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 in in-ter-ac-tive mode, and
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , e
x-tra pa-ram-e-ters are passed on to
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[]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 trellis.switchFocus[]\T1/ptm/m/n/10 , the
se are used (in com-bi-na-tion with
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[][][]\T1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Latt
ice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.trellis[][][][]\T1/ptm/m
/n/10 , [][][]\T1/pcr/m/n/10 trellis.currentLayout[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
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[]\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/pcr/m/n/10 x []\T1/ptm/m
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 round
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\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 horizontal=FALSE[]\T1/ptm/m/n/10 ). By de-fa
ult, the ac-tual box-plot statis-tics are cal-cu-lated us-ing
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[]\T1/ptm/m/n/10 All three num-bers should be be-tween 0 and 1. The
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[]\T1/ptm/m/n/10 numeric, be-tween 0 and 1, giv-ing a min-i-mum sat-u-ra-tion i
n
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[]\T1/pcr/m/n/10 panel.levelplot.raster []\T1/ptm/m/n/10 is an al-ter-na-tive p
anel func-tion that uses the raster draw-
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\T1/ptm/m/n/10 can only ren-der data on an eq-ui-s-paced grid), but can be more
 ef-fi-cient. When us-ing
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NULL,[] 
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[]\T1/ptm/m/n/10 The panel func-tion used for the di-ag-o-nals. See ar-gu-ments
 to
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[]\T1/pcr/m/n/10 diag.panel.splom []\T1/ptm/m/n/10 to know what ar-gu-ments thi
s func-tion is passed
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\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 diag.panel []\T1/ptm/m/n/10 from []\T1/pcr/
m/n/10 panel.pairs[]\T1/ptm/m/n/10 . Cur-rently ig-nored by
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 []              \T1/pcr/m/n/9 function(i,j) hcl.colors(11)[i+j-1]) ## rainbow(
11, start=.12, end=.5)[i+j-1])[] 
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[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
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[]\T1/pcr/m/n/10 "lm" []\T1/ptm/m/n/10 adds a lin-ear re-gres-sion line (same a
s [][][]\T1/pcr/m/n/10 panel.lmline[][][][]\T1/ptm/m/n/10 , ex-cept
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\T1/ptm/m/n/10 for de-fault graph-i-cal pa-ram-e-ters). []\T1/pcr/m/n/10 "loess
" []\T1/ptm/m/n/10 adds a loess fit (same as
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[]\T1/ptm/m/n/10 Most gen-er-ally, []\T1/pcr/m/n/10 grid []\T1/ptm/m/n/10 can b
e a list of ar-gu-ments to be sup-plied to
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e.type)[] 
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ntifier, name.type)[] 
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[]\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 alpha[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1/ptm/m/n/10 , 
[]\T1/pcr/m/n/10 fill[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 , 
[]\T1/pcr/m/n/10 cex[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lineheight[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 font[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.rect, col = 4, alpha = 0.5, wid
th = 0.1, height = 0.1)[] 
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rule = "evenodd")[] 
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/RJ-2012-017/[] 
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g", col = "grey")[] 
[2878]
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d", col = "grey")[] 
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 []\T1/pcr/m/n/10 panel.grid(h=3, v=3, col, col.line, lty, lwd, x, y, ..., iden
tifier = "grid")[] 
[2879]
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[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
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rage, grid = FALSE,[] 
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[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/pcr/m/n/10 panel.super
pose
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[]\T1/ptm/m/n/10 from []\T1/pcr/m/n/10 panel.superpose.2[]\T1/ptm/m/n/10 , and 
to []\T1/pcr/m/n/10 panel.groups []\T1/ptm/m/n/10 from
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ack, ...)[] 
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[2890]
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ipts, ...)[] 
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[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/pcr/m/n/10 type [
]\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2891]
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[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
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[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
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 []                \T1/pcr/m/n/9 ans$bottom$labels$labels <- parse(text = ans$b
ottom$labels$labels)[] 
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[2897]
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\T1/pcr/m/n/10 condition []\T1/ptm/m/n/10 for 2-D, and []\T1/pcr/m/n/10 left, r
ight.x, right.y, left.name, right.x.name,
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[]\T1/ptm/m/n/10 Factor with lev-els []\T1/pcr/m/n/10 "Svansota"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Manchuria"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 475"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "Velvet"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Peatland"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Glabron"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 4
57"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Wisconsin No. 38"[]\T1/ptm/m/n/10 ,
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pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                
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\T1/pcr/m/n/10 diseases[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Diabetes[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 Flu and pneumonia[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 He
art disease[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Lower
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 []        \T1/pcr/m/n/9 par.settings = simpleTheme(pch = 16), auto.key = list(
columns = 2),[] 
[2911]
[2912]) (./mgcv-pkg.tex
Chapter 24.
[2913]
[2914]
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=NULL, 
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e=FALSE,[] 
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tercept=NULL,[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
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[][][]\T1/pcr/m/n/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
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 []\T1/pcr/m/n/9 system.time(b2 <- bam(y ~ s(x0,bs=bs,k=k)+s(x1,bs=bs,k=k)+s(x2
,bs=bs,k=k)+[] 
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[]\T1/ptm/m/n/10 The link func-tion: one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cloglog" 
[]\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t
ing en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
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[]\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro
-duc-tion with R (2nd edi-tion).
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h + 2*b$family$data$
q^.5),col=2)[] 
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h - 2*b$family$data$
q^.5),col=2)[] 
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 []    \T1/pcr/m/n/9 plot(b$y[oy],rs[oy,ii[1]],ylim=c(-3,3),type="l",ylab="scor
e residuals",[] 
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 []\T1/pcr/m/n/9 bs <- gam(cbind(time,strata)~s(age,by=sex)+sex+s(nodes)+perfor
+rx+obstruct[] 
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 []\T1/pcr/m/n/9 if (i==1) plot(bs$family$data$tr[ind],exp(-bs$family$data$h[in
d]),type="l",[] 
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 []      \T1/pcr/m/n/9 lines(bs$family$data$tr[ind],exp(-bs$family$data$h[ind])
,lwd=2,col=i)[] 
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 []\T1/pcr/m/n/9 b <- gam(t~s(x0)+s(x1)+s(x2,k=15)+s(x3),family=cox.ph,weights=
d,data=surv)[] 
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 []  \T1/pcr/m/n/9 if (inter) prg <- txtProgressBar(min = 0, max = length(sid),
 initial = 0,[] 
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 []    \T1/pcr/m/n/9 if (um[[et]][1]==max(tr)&&um[[status]][1]==1) um[[event]][
nrow(um)] <- 1[] 
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 []\T1/pcr/m/n/9 pd <- data.frame(lapply(X=di,FUN=app,t=di$day,to=te)) ## inter
polate to te[] 
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 []\T1/pcr/m/n/9 bd <- bam(y~s(x0)+ s(x1) + s(x1,fac,bs="sz",k=5)+s(x2,k=20),di
screte=TRUE)[] 
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 []\T1/pcr/m/n/10 fixDependence(X1,X2,tol=.Machine$double.eps^.5,rank.def=0,str
ict=FALSE) 
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 []\T1/pcr/m/n/10 gam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL,[] 
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[]\T1/ptm/m/n/10 A GAM for-mula, or a list of for-mu-lae (see [][][]\T1/pcr/m/n
/10 formula.gam[][][] []\T1/ptm/m/n/10 and also
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
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\T1/ptm/m/n/10 eral lin-ear func-tion-als of smooths, via the sum-ma-tion con-v
en-tion mech-a-nism de-scribed in
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[][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
gamObject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
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 []\T1/pcr/m/n/10 gam.control(nthreads=1,ncv.threads=1,irls.reg=0.0,epsilon = 1
e-07, 
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 []            \T1/pcr/m/n/10 maxit = 200,mgcv.tol=1e-7,mgcv.half=15, trace = F
ALSE,[] 
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 []         \T1/pcr/m/n/10 mustart = NULL, offset = rep(0, nobs), U1 = diag(nco
l(x)),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 3592--3592
 []         \T1/pcr/m/n/10 printWarn=TRUE,scoreType="REML",null.coef=rep(0,ncol
(x)),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3593--3593
 []         \T1/pcr/m/n/10 pearson.extra=0,dev.extra=0,n.true=-1,Sl=NULL,nei=NU
LL,...)[] 
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[]\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/pcr/m/n/10 gam []\T1/ptm
/m/n/10 mod-els us-ing []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (
see
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 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
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[]\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix
ed penalty, if
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 []  \T1/pcr/m/n/9 mod <- gam(y~s(a,bs="re")+s(b,bs="re")+s(a,b,bs="re")+s(x0,i
d=1)+s(x1,id=1)+[] 
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 []\T1/pcr/m/n/10 gamlss.gH(X, jj, l1, l2, i2, l3 = 0, i3 = 0, l4 = 0, i4 = 0, 
d1b = 0, 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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[]\T1/ptm/m/n/10 In the event of []\T1/pcr/m/n/10 lme []\T1/ptm/m/n/10 con-ver-
gence fail-ures, con-sider mod-i-fy-ing
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[][][]\T1/pcr/m/n/10 magic[][][] []\T1/ptm/m/n/10 for an al-ter-na-tive for cor
-re-lated data, [][][]\T1/pcr/m/n/10 te[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gam[][][][]\T1/ptm
/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 n
egbin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 vis.gam[][][][]\T1/ptm/m/n/1
0 ,[][][]\T1/pcr/m/n/10 pdTens[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gamm4 [
]\T1/ptm/m/n/10 ( [][]$\T1/pcr/m/n/10 https : / / cran . r-[]project .
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[]\T1/ptm/m/n/10 If `outer' it-er-a-tion has been used to fit the model (see []
[][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 ar-gu-ment
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[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
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 []\T1/pcr/m/n/10 ginla(G,A=NULL,nk=16,nb=100,J=1,interactive=FALSE,integ=0,app
rox=0) 
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[]\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/pcr/m/n/10 gam(..
.,fit=FALSE) []\T1/ptm/m/n/10 or
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 []  \T1/pcr/m/n/9 ## example using a scale location model for the motorcycle d
ata. A simple[] 
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 []      \T1/pcr/m/n/9 } else lines(xg,predict(din,xg)$y,col=lcol[j],lwd=lwd[j]
,lty=lty[j])[] 
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 []  \T1/pcr/m/n/9 fv <- predict(b,se=TRUE) ## usual Gaussian approximation, fo
r comparison[] 
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 []       \T1/pcr/m/n/9 (1+exp(-10*(x[201:300]-.5)))-0.9933071) + z*(1-z)*5 + r
norm(100)*.4[] 
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 []\T1/pcr/m/n/10 jagam(formula,family=gaussian,data=list(),file,weights=NULL,n
a.action, 
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 []\T1/pcr/m/n/10 control=gam.control(),centred=TRUE,sp.prior = "gamma",diagona
lize=FALSE)[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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 []\T1/pcr/m/n/10 ldTweedie(y,mu=y,p=1.5,phi=1,rho=NA,theta=NA,a=1.001,b=1.999,
all.derivs=FALSE) 
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 []\T1/pcr/m/n/9 "The world is ruled by idiots because only an idiot would want
 to rule the world.",[] 
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 []      \T1/pcr/m/n/10 .Machine$double.eps^0.5),extra.rss=0,n.score=length(y),
nthreads=1)[] 
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[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
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 []\T1/pcr/m/n/9 ## Alternative, better scaling example, using the discrete opt
ion with bam...[] 
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 []\T1/pcr/m/n/9 for (sim in c(1,7)) { ## cycle over uncorrelated and correlate
d covariates[] 
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 []    \T1/pcr/m/n/9 dat1[[dname[i]]][dat1[[by.name]]] <- mean(dat1[[dname[i]]]
,na.rm=TRUE)[] 
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[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/pcr/m/n/10 Dim
.pdIndot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdIdnot[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 logDet.pd
Idnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdConstruct.pdIdnot[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdMatrix.p
dIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 solve.pdIdnot[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 summary.pdIdnot[]\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 These func-tions ([]\T1/pcr/m/n/10 pdTens[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdFactor.p
dTens[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdTens
 []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 summary.pdTens[]\T1/ptm/m/n/10 ) would n
ot nor-mally be
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 []\T1/pcr/m/n/10 plot(x,residuals=FALSE,rug=NULL,se=TRUE,pages=0,select=NULL,s
cale=-1,[] 
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 []         \T1/pcr/m/n/10 trans=I,seWithMean=FALSE,unconditional=FALSE,by.resi
ds=FALSE,[] 
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[]\T1/ptm/m/n/10 just won't let you do it. In this case, the quick-est op-tion 
is some-times to clone the
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 []        \T1/pcr/m/n/10 na.action=na.pass,cluster=NULL,discrete=TRUE,n.thread
s=1,gc.level=0,...)[] 
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[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 type=="terms" []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 type="iterms" []\T1/ptm/m/n/10 then terms (smooth or para-
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 []        \T1/pcr/m/n/10 na.action=na.pass,unconditional=FALSE,iterms.type=NUL
L,...)[] 
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 []\T1/pcr/m/n/9 x1 <- seq(.2,.8,length=m1);x2 <- seq(.2,.8,length=m2) ## margi
nal grid points[] 
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 []\T1/pcr/m/n/9 df <- data.frame(x0=rep(.5,n),x1=rep(x1,m2),x2=rep(x2,each=m1)
,x3=rep(0,n))[] 
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 []  \T1/pcr/m/n/9 Xi[,(i-1)*9+1:9+1] <- Xp[,(i-1)*9+1:9+1] ## Xi%*%coef(b) = s
mooth deriv i[] 
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[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
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\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
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[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
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[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
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\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
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[]\T1/ptm/m/n/10 The smooth ob-ject will be largely what is re-turned from
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[][][]\T1/pcr/m/n/10 smooth.construct.so.smooth.spec[][][][]\T1/ptm/m/n/10 , al
-though el-e-ments []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 S [
]\T1/ptm/m/n/10 are not needed,
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Underfull \hbox (badness 1253) in paragraph at lines 10959--10961
[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
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Underfull \hbox (badness 1946) in paragraph at lines 11212--11219
[]\T1/ptm/m/n/10 The sec-ond method rep-re-sents the con-ven-tional ran-dom ef-
fects in a GAM in the same
Underfull \hbox (badness 2221) in paragraph at lines 11212--11219
\T1/ptm/m/n/10 way that the smooths are rep-re-sented --- as pe-nal-ized re-gre
s-sion terms. This method
Underfull \hbox (badness 2042) in paragraph at lines 11212--11219
\T1/ptm/m/n/10 can be used with [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10
 by mak-ing use of []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms in a 
model: see
Underfull \hbox (badness 2846) in paragraph at lines 11220--11223
[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/pcr/m/n
/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/pcr/m/n/10 gam[][][] []\T1
/ptm/m/n/10 can be used:
Underfull \hbox (badness 5862) in paragraph at lines 11220--11223
\T1/ptm/m/n/10 see [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 . If s
mooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
[3108]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 11286--11286
 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11296--11296
 []\T1/pcr/m/n/9 ## The effect of the new factor levels (or any interaction inv
olving them)[] 
[3109]
Underfull \hbox (badness 10000) in paragraph at lines 11327--11330
[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/pcr/m/n/
10 "deviance"[]\T1/ptm/m/n/10 ,
[3110]
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Overfull \hbox (36.78088pt too wide) in paragraph at lines 11629--11629
 []\T1/pcr/m/n/10 s(..., k=-1,fx=FALSE,bs="tp",m=NA,by=NA,xt=NULL,id=NULL,sp=NU
LL,pc=NULL) 
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 []  \T1/pcr/m/n/9 true <- mu + (del * sigma) * sinh((1/del) * asinh(qnorm(qq))
 + (eps/del))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12016--12016
 []\T1/pcr/m/n/9 b <- gam(list(accel~s(times, k=20, bs = "ad"), ~s(times, k = 1
0), ~1, ~1),[] 
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Underfull \hbox (badness 3861) in paragraph at lines 12118--12121
[]\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to
 model ma-trix X, or, if
Overfull \hbox (36.78088pt too wide) in paragraph at lines 12127--12127
 []\T1/pcr/m/n/10 Sl.initial.repara(Sl, X, inverse = FALSE, both.sides = TRUE, 
cov = TRUE,[] 
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Underfull \hbox (badness 10000) in paragraph at lines 12144--12148
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
Underfull \hbox (badness 10000) in paragraph at lines 12184--12188
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 12328--12328
 [] \T1/pcr/m/n/9 range(er$values-um$values[ind]);range(abs(er$vectors)-abs(um$
vectors[,ind]))[] 
Underfull \hbox (badness 1975) in paragraph at lines 12339--12344
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[3127]
Underfull \hbox (badness 1803) in paragraph at lines 12416--12420
\T1/ptm/m/n/10 The last en-try will be the []\T1/pcr/m/n/10 by []\T1/ptm/m/n/10
 vari-able, if []\T1/pcr/m/n/10 object$by []\T1/ptm/m/n/10 is not []\T1/pcr/m/n
/10 "NA"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 1502) in paragraph at lines 12428--12440
[]\T1/pcr/m/n/10 cs.smooth.spec []\T1/ptm/m/n/10 (cu-bic re-gres-sion splines w
ith shrinkage-to-zero); []\T1/pcr/m/n/10 cc.smooth.spec
[3128]
Underfull \hbox (badness 2401) in paragraph at lines 12445--12449
[]\T1/ptm/m/n/10 method is used if there is no more spe-cific method avail-able
. Plot meth-ods can be
Underfull \hbox (badness 2970) in paragraph at lines 12445--12449
\T1/ptm/m/n/10 added for spe-cific smooth classes, see source code for []\T1/pc
r/m/n/10 mgcv:::plot.sos.smooth[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 6876) in paragraph at lines 12640--12646
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of on
e or two vari-ables, spec-i-fied via terms like
[3132]
Underfull \hbox (badness 10000) in paragraph at lines 12681--12682
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[3134]
Underfull \hbox (badness 10000) in paragraph at lines 12799--12800
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3135]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12853--12853
 []  \T1/pcr/m/n/9 b <- gam(y~s(x0,bs=bs,m=c(4,2))+s(x1,bs=bs)+s(x2,k=15,bs=bs,
m=c(4,3,0))+[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12865--12865
 []  \T1/pcr/m/n/9 ## now a model with first order penalty evaluated over (-.5,
1.5) (black)[] 
[3136]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12877--12877
 []  \T1/pcr/m/n/9 ## penalty defined on (-.5,1.5) gives plausible predictions 
and intervals[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12882--12882
 []  \T1/pcr/m/n/9 ## penalty defined on whole real line gives constant width i
ntervals away[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12888--12888
 []  \T1/pcr/m/n/9 ## penalty defined only over the data interval (0,1) gives w
ild and wide[] 
Overfull \hbox (3.70428pt too wide) in paragraph at lines 12889--12889
 []  \T1/pcr/m/n/9 ## extrapolation since penalty has been \TS1/cmtt/m/n/9 `\T1
/pcr/m/n/9 turned off\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 outside data range:[] 
[3137]
Underfull \hbox (badness 10000) in paragraph at lines 12958--12960
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a
Underfull \hbox (badness 10000) in paragraph at lines 12958--12960
\T1/ptm/m/n/10 term []\T1/pcr/m/n/10 s(...,bs="cr",...)[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 s(...,bs="cs",...) []\T1/ptm/m/n/10 or
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[3139]
Underfull \hbox (badness 10000) in paragraph at lines 13088--13089
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[3141]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13169--13169
 []\T1/pcr/m/n/9 b <- gam(y~s(x,z,bs="ds",m=c(1,.5),k=50),data=data)  ## first 
deriv penalty[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 13170--13170
 []\T1/pcr/m/n/9 b1 <- gam(y~s(x,z,bs="ds",m=c(2,.5),k=50),data=data) ## modifi
ed 2nd deriv[] 
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[3143]
Underfull \hbox (badness 10000) in paragraph at lines 13323--13324
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[3147]
[3148]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13573--13573
 []\T1/pcr/m/n/9 b <- gam(crime ~ s(district,bs="mrf",k=20,xt=xt),data=columb,m
ethod="REML")[] 
[3149]
Underfull \hbox (badness 10000) in paragraph at lines 13634--13636
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[3151]
Underfull \hbox (badness 10000) in paragraph at lines 13793--13796
[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 smooth.construct []\T1/ptm/m/n/10 met
hod a smooth spec-i-fi-ca-tion ob-
Underfull \hbox (badness 3312) in paragraph at lines 13793--13796
\T1/ptm/m/n/10 ject, usu-ally gen-er-ated by a term []\T1/pcr/m/n/10 s(x,...,bs
="re",)[]\T1/ptm/m/n/10 . For the
Underfull \hbox (badness 7099) in paragraph at lines 13793--13796
[]\T1/pcr/m/n/10 predict.Matrix []\T1/ptm/m/n/10 method an ob-ject of class []\
T1/pcr/m/n/10 "random.effect"
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[3153]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 13879--13879
 []\T1/pcr/m/n/9 b <- c(rnorm(nb/2)*2,rnorm(nb/2)*.5) ## random effect now with
 2 variances[] 
[3154]
Underfull \hbox (badness 10000) in paragraph at lines 13924--13930
[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
Underfull \hbox (badness 7832) in paragraph at lines 13924--13930
[]\T1/pcr/m/n/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a
 []\T1/pcr/m/n/10 gam []\T1/ptm/m/n/10 for-
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[3156]
[3157]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 14139--14139
 []\T1/pcr/m/n/9 ## notice NULL element in \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 xt\TS1
/pcr/m/n/9 ' \T1/pcr/m/n/9 list - to indicate no xt object for "cr" basis...[] 
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[3159]
Underfull \hbox (badness 10000) in paragraph at lines 14242--14250
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths on th
e sphere, via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14268--14269
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[3161]
[3162]
Underfull \hbox (badness 7613) in paragraph at lines 14413--14416
[]\T1/ptm/m/n/10 method an ob-ject of class []\T1/pcr/m/n/10 "sz.interaction" [
]\T1/ptm/m/n/10 pro-duced by the
[3163]
Underfull \hbox (badness 1546) in paragraph at lines 14434--14435
[]\T1/ptm/m/n/10 The terms can have a smooth-ing pa-ram-e-ter per smooth, or a 
sin-gle smooth-ing pa-ram-e-
Overfull \hbox (128.58029pt too wide) in paragraph at lines 14480--14480
 []\T1/pcr/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs
="sz",id=1),data=dat,method="REML")[] 
[3164]
[3165]
[3166]
Underfull \hbox (badness 3396) in paragraph at lines 14626--14629
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of an
y num-ber of vari-ables, spec-i-fied via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14671--14673
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
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[3172]
Underfull \hbox (badness 10000) in paragraph at lines 14962--14964
[]\T1/pcr/m/n/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see
[3173]
Underfull \hbox (badness 10000) in paragraph at lines 14996--15000
[][][]\T1/pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Duchon.spline[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cubic.regression.spline[][][][]\T1/ptm/m/n/
10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14996--15000
[][][]\T1/pcr/m/n/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 d.sp
line[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 mrf[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 soap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Spherical
.Spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 adaptive.smooth[][][][]\T1
/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14996--15000
[][][]\T1/pcr/m/n/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 ,
[3174]
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[3178]
Underfull \hbox (badness 2158) in paragraph at lines 15285--15285
[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
[3179]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 15364--15364
 []\T1/pcr/m/n/10 spasm.sp(object,sp,w=rep(1,object$nobs),get.trH=TRUE,block=0,
centre=FALSE)[] 
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[3181]
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 []                  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars
"),...)[] 
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[3183]
Underfull \hbox (badness 4846) in paragraph at lines 15629--15632
[]\T1/ptm/m/n/10 The es-ti-mated co-vari-ance ma-trix of the pa-ram-e-ters (or 
es-ti-ma-tors if
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Overfull \hbox (120.78088pt too wide) in paragraph at lines 16847--16847
 []\T1/pcr/m/n/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL,
unconditional=FALSE, ...)[] 
[3204]
Underfull \hbox (badness 1715) in paragraph at lines 16869--16870
[]\T1/ptm/m/n/10 Basically, just ex-tracts []\T1/pcr/m/n/10 object$Ve[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 object$Vp []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 object
$Vc []\T1/ptm/m/n/10 (if avail-able) from a
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[3207]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 17059--17059
 []\T1/pcr/m/n/10 XWXd(X,w,k,ks,ts,dt,v,qc,nthreads=1,drop=NULL,ar.stop=-1,ar.r
ow=-1,ar.w=-1, 
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 []\T1/pcr/m/n/10 XWyd(X,w,y,k,ks,ts,dt,v,qc,drop=NULL,ar.stop=-1,ar.row=-1,ar.
w=-1,lt=NULL)[] 
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 []\T1/pcr/m/n/10 diagXVXd(X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,rt=
NULL)[] 
[3208]
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[]\T1/ptm/m/n/10 Negative to ig-nore. Oth-er-wise sum rows
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[]\T1/pcr/m/n/10 (ar.stop[i-1]+1):ar.stop[i] []\T1/ptm/m/n/10 of the rows se-le
cted by []\T1/pcr/m/n/10 ar.row
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[3210]
[3211]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 17271--17271
 []\T1/pcr/m/n/9 ## 1. If the zero inflation rate becomes decoupled from the li
near predictor,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 17272--17272
 []\T1/pcr/m/n/9 ## it is possible for the linear predictor to be almost unboun
ded in regions[] 
[3212]
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 []\T1/pcr/m/n/9 ## 3. Refit fixing the theta parameters at their estimated val
ues, to check we[] 
[3213]
[3214]
[3215]) (./nlme-pkg.tex
[3216]
Chapter 25.
[3217]
Underfull \hbox (badness 1009) in paragraph at lines 78--87
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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[3220]
[3221]
[3222]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 448--448
 []  \T1/pcr/m/n/9 lme(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
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[3224]
[3225]
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 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 251-254 ---------------------------
---------------[] 
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 []\T1/pcr/m/n/9 # Compare an "lme" object with a "gls" object (test would be n
on-sensical!)[] 
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 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 222-225 ---------------------------
---------------[] 
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 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 352-365 ---------------------------
---------------[] 
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[3231]
[3232]
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 []                  \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxil
lary fissure"),[] 
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[3234]
Underfull \hbox (badness 5446) in paragraph at lines 1140--1142
[]\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 http://stat.gamma.rug.nl/snijders/multilevel
.htm[]\T1/ptm/m/n/10 ', the first edi-tion of
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[3241]
Underfull \hbox (badness 10000) in paragraph at lines 1617--1620
[][][]\T1/pcr/m/n/10 lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fixed.
effects.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ranef.lmList[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.ranef.lmList[][][][]\T1/ptm/m/n/10 
,
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[]\T1/ptm/m/n/10 This method func-tion ex-tracts the co-ef-fi-cients as-so-ci-a
ted with each com-po-nent of the
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[3246]
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\T1/ptm/m/n/10 is in-ner to the []\T1/pcr/m/n/10 displayLevel []\T1/ptm/m/n/10 
group-ing fac-tor. If equal to []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 ,
[3247]
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[]\T1/ptm/m/n/10 fitted model ob-jects, from which pre-dic-tions can be ex-trac
ted us-ing the
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[3250]
Underfull \hbox (badness 4168) in paragraph at lines 2238--2244
[][][]\T1/pcr/m/n/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corAR
MA[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 ,
[3251]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2263--2263
 []  \T1/pcr/m/n/9 gls(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
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Underfull \hbox (badness 10000) in paragraph at lines 2816--2820
[][][]\T1/pcr/m/n/10 corFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cor
Matrix.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 recalc.corStruct[
][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 6493) in paragraph at lines 3548--3556
[][][]\T1/pcr/m/n/10 corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corGau
s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corLin[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corSp
her[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T
1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 5116--5120
[][][]\T1/pcr/m/n/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/p
cr/m/n/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 5540--5543
[][][]\T1/pcr/m/n/10 getGroups.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 getGro
ups.gls[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 2799) in paragraph at lines 6044--6050
\T1/ptm/m/n/10 covariance ma-trix, ei-ther []\T1/pcr/m/n/10 "random.effects" []
\T1/ptm/m/n/10 for the random-effects
[3311]
Underfull \hbox (badness 7133) in paragraph at lines 6105--6109
[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3312]
Underfull \hbox (badness 2057) in paragraph at lines 6194--6205
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gl
sControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 glsObject[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gls[][][][]
\T1/ptm/m/n/10 ,
[3313]
Underfull \hbox (badness 10000) in paragraph at lines 6258--6260
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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[3317]
Underfull \hbox (badness 7133) in paragraph at lines 6505--6509
[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3318]
Underfull \hbox (badness 10000) in paragraph at lines 6602--6608
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gn
lsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsObject[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 predict.gnls[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (54.78088pt too wide) in paragraph at lines 6629--6629
 []\T1/pcr/m/n/10 gnlsControl(maxIter = 50, nlsMaxIter = 7, msMaxIter = 50, min
Scale = 0.001, 
[3319]
Underfull \hbox (badness 10000) in paragraph at lines 6667--6669
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3320]
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[3323]
Underfull \hbox (badness 10000) in paragraph at lines 6936--6943
[][][]\T1/pcr/m/n/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gappl
y[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gsummary[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nff
GroupedData[][][][]\T1/ptm/m/n/10 ,
[3324]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6954--6954
 []                \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxilla
ry fissure" ),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6959--6959
 []\T1/pcr/m/n/9 fm1 <- lme( Orth.new )   # fixed and groups formulae extracted
 from object[] 
Underfull \hbox (badness 2875) in paragraph at lines 6981--6983
[]\T1/ptm/m/n/10 an ob-ject to be sum-ma-rized - usu-ally a []\T1/pcr/m/n/10 gr
oupedData []\T1/ptm/m/n/10 ob-ject or a
[3325]
[3326]
[3327]
Underfull \hbox (badness 10000) in paragraph at lines 7196--7202
[][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr
/m/n/10 Initialize.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initi
alize.lmeStruct[][][][]\T1/ptm/m/n/10 ,
[3328]
[3329]
[3330]
Underfull \hbox (badness 1997) in paragraph at lines 7341--7349
[]\T1/ptm/m/n/10 an op-tional list with con-trol pa-ram-e-ters for the ini-tial
-iza-tion and op-ti-
Underfull \hbox (badness 2205) in paragraph at lines 7341--7349
\T1/ptm/m/n/10 miza-tion al-go-rithms used in []\T1/pcr/m/n/10 lme[]\T1/ptm/m/n
/10 . De-faults to []\T1/pcr/m/n/10 list(niterEM=20,
Underfull \hbox (badness 3118) in paragraph at lines 7364--7367
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initializ
e.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.varFunc[][][][]\T1/ptm/m/
n/10 ,
[3331]
[3332]
[3333]
Underfull \hbox (badness 3354) in paragraph at lines 7574--7576
[]\T1/ptm/m/n/10 linear model co-ef-fi-cients, only present when []\T1/pcr/m/n/
10 which []\T1/ptm/m/n/10 is not equal to
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[3341]
Underfull \hbox (badness 10000) in paragraph at lines 8101--8118
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lm
e.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme.groupedData[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 lmeObject[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 8101--8118
[][][]\T1/pcr/m/n/10 lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmL
ist[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 plot.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
predict.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qqnorm.lme[][][][]\T1/
ptm/m/n/10 ,
[3342]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 8144--8144
 []    \T1/pcr/m/n/10 subset, method, na.action, control, contrasts, keep.data 
= TRUE)[] 
Underfull \hbox (badness 1642) in paragraph at lines 8153--8175
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
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[3344]
[3345]
[3346]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 8418--8418
 []\T1/pcr/m/n/10 lmeControl(maxIter = 50, msMaxIter = 50, tolerance = 1e-6, ni
terEM = 25, 
Underfull \hbox (badness 1189) in paragraph at lines 8443--8445
[]\T1/ptm/m/n/10 maximum num-ber of eval-u-a-tions of the ob-jec-tive func-tion
 per-mit-ted for
[3347]
Underfull \hbox (badness 10000) in paragraph at lines 8466--8468
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
Overfull \hbox (9.78043pt too wide) in paragraph at lines 8509--8509
 []\T1/pcr/m/n/9 # request that information on the evolution of the ms iteratio
ns be printed[] 
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[3349]
[3350]
[3351]
[3352]
[3353]
[3354]
[3355]
[3356]
[3357]
[3358]
[3359]
Underfull \hbox (badness 10000) in paragraph at lines 9266--9273
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 gls[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.corStruct[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9277--9277
 []\T1/pcr/m/n/9 fm1 <- lme(distance ~ Sex * age, Orthodont, random = ~ age, me
thod = "ML") 
[3360]
[3361]
[3362]
[3363]
[3364]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  
[3365]
Underfull \hbox (badness 10000) in paragraph at lines 9648--9651
[]\T1/ptm/m/n/10 a ma-trix, or list of ma-tri-ces, with the same di-men-sions a
s
Underfull \hbox (badness 3108) in paragraph at lines 9692--9695
[]\T1/ptm/m/n/10 a ma-trix with the new val-ues to be as-signed to the positive
-definite
Underfull \hbox (badness 2521) in paragraph at lines 9692--9695
\T1/ptm/m/n/10 ma-trix rep-re-sented by []\T1/pcr/m/n/10 object[]\T1/ptm/m/n/10
 . Must have the same di-men-sions as
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[3373]
[3374]
[3375]
[3376]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10362--10362
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights, 
[3377]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10366--10366
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
Underfull \hbox (badness 1596) in paragraph at lines 10395--10421
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[3378]
[3379]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10549--10549
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
[3380]
[3381]
[3382]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 10700--10700
 []            \T1/pcr/m/n/10 opt = c("nlminb", "nlm"), natural = TRUE, sigma =
 NULL, ...)[] 
Underfull \hbox (badness 2213) in paragraph at lines 10711--10716
[]\T1/ptm/m/n/10 maximum num-ber of it-er-a-tions for [][][]\T1/pcr/m/n/10 nlmi
nb[][][] []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 iter.max[]\T1/ptm/m/n/10 ) or the [
][][]\T1/pcr/m/n/10 nlm[][][]
Underfull \hbox (badness 6961) in paragraph at lines 10733--10737
[]\T1/ptm/m/n/10 a log-i-cal value passed as the []\T1/pcr/m/n/10 trace []\T1/p
tm/m/n/10 to [][][]\T1/pcr/m/n/10 nlminb[][][](.., control=
[3383]
Underfull \hbox (badness 10000) in paragraph at lines 10752--10754
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3384]
[3385]
[3386]
[3387]
Overfull \hbox (96.18033pt too wide) in paragraph at lines 11048--11048
 []\T1/pcr/m/n/9 cfm1 <- confint(fm1) # via profiling each % FIXME: only *one* 
message instead of one *each*[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 11049--11049
 []\T1/pcr/m/n/9 mat.class <- class(matrix(1)) # ("matrix", "array") for R >= 4
.0.0;  ("matrix" in older R)[] 
[3388]
[3389]
[3390]
[3391]
[3392]
[3393]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 11439--11439
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3394]
[3395]
[3396]
[3397]
[3398]
[3399]
Underfull \hbox (badness 6268) in paragraph at lines 11826--11836
[][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdMatrix[][][][]\T1/ptm/m/n/10 ,
[3400]
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[3402]
[3403]
Underfull \hbox (badness 10000) in paragraph at lines 12087--12093
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 coef.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 pdConstruct[][][][]\T1/ptm/m/n/10 ,
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[3406]
[3407]
[3408]
Underfull \hbox (badness 6876) in paragraph at lines 12409--12411
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 value []\T1/ptm/m/n/10 is an \T1/ptm/m/it/
10 ini-tial-ized []\T1/pcr/m/n/10 pdMat []\T1/ptm/m/n/10 ob-ject, []\T1/pcr/m/n
/10 object []\T1/ptm/m/n/10 will be con-structed from
[3409]
[3410]
Underfull \hbox (badness 2452) in paragraph at lines 12565--12572
[][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
pdNatural[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdSymm[][][][]\T1/ptm/m/
n/10 , [][][]\T1/pcr/m/n/10 reStruct[][][][]\T1/ptm/m/n/10 ,
[3411]
Underfull \hbox (badness 10000) in paragraph at lines 12631--12637
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pdMatrix.reStruct[][][][]\T1/ptm/m/n/10 ,
[3412]
[3413]
[3414]
[3415]
[3416]
[3417]
[3418]
[3419]
[3420]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 13220--13220
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3421]
[3422]
[3423]
[3424]
[3425]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13585--13585
 []\T1/pcr/m/n/9 plot(fm1, resid(., type = "pool") ~ fitted(.) | Sex, abline = 
0, id = 0.05)[] 
[3426]
Underfull \hbox (badness 10000) in paragraph at lines 13612--13615
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nffGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3427]
Underfull \hbox (badness 1838) in paragraph at lines 13655--13662
[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/pcr/m/
n/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/pcr/m/n/10 inner
Underfull \hbox (badness 3713) in paragraph at lines 13655--13662
[]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 innerGroups []\T1/ptm/m/n/10 are non-[]\T1
/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 , a leg-end for the dif-fer-ent []\T1/pcr/m/n/
10 inner
Overfull \hbox (12.78088pt too wide) in paragraph at lines 13712--13712
 []\T1/pcr/m/n/10 plot(x, outer, inner, innerGroups, xlab, ylab, strip, aspect,
 panel,[] 
[3428]
Underfull \hbox (badness 10000) in paragraph at lines 13719--13722
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nfnGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
Underfull \hbox (badness 2469) in paragraph at lines 13719--13722
[]\T1/pcr/m/n/10 groupedData []\T1/ptm/m/n/10 ob-ject with a nu-meric pri-mary 
co-vari-ate and a sin-gle
[3429]
Underfull \hbox (badness 10000) in paragraph at lines 13827--13830
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nmGrouped
Data[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3430]
[3431]
Underfull \hbox (badness 10000) in paragraph at lines 13921--13923
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 c
ollapse.groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nfnGroupe
dData[][][][]\T1/ptm/m/n/10 ,
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[3437]
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 []\T1/pcr/m/n/9 newOrth <- data.frame(Sex = c("Male","Male","Female","Female",
"Male","Male"),[] 
[3440]
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[3448]
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fects}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15098 ...Extract Random Effects}{random.effects}
                                                  
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fects.1}) has been already used, duplicate ignored
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                   \relax 
l.15098 ...Extract Random Effects}{random.effects}
                                                  
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[3459]
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 []\T1/pcr/m/n/9 plot(Remifentanil, type = "l", lwd = 2) # shows the 65 patient
s\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 remi profiles 
[3460]
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[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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[3462]
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 []          \T1/pcr/m/n/10 type = c("response", "pearson", "normalized"), asLi
st = FALSE, ...)[] 
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[3467]
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[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 l
me[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 solve.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 summary.reStruct[][][][]\T1/ptm/m/n/10 ,
[3468]
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 []         \T1/pcr/m/n/10 method = c("REML", "ML"), niterEM = c(40, 200), useG
en, ...)[] 
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[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
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\T1/pcr/m/n/10 of an Identity" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdIdent[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Positive-Definite,
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\T1/pcr/m/n/10 Natural Parametrization" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 p
dNatural[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General
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\T1/pcr/m/n/10 Positive-Definite" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdSymm[
]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 data.class(object)
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[]\T1/pcr/m/n/10 "Constant plus power of variance
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[]\T1/pcr/m/n/10 "Constant plus proportion of variance
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[][][]\T1/pcr/m/n/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varCo
nstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varConstProp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varIdent[][][][]\T1
/ptm/m/n/10 ,
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 []\T1/pcr/m/n/9 # Generate some synthetic data using the two-component error m
odel and use 
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 []\T1/pcr/m/n/9 # overparameterisation in the case of a constant term in the v
ariance function[] 
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[][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rLin[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 Variogram.corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogr
am.corSpher[][][][]\T1/ptm/m/n/10 ,
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3499]
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[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 "[][]corR
atio[][][]"[]\T1/ptm/m/n/10 , rep-re-sent-ing an Ra-tio-nal
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3500]
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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[][][]\T1/pcr/m/n/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Va
riogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.default[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 18471--18480
[][][]\T1/pcr/m/n/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 Variogram.corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rRatio[][][][]\T1/ptm/m/n/10 ,
[3501]
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\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
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[3503]
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[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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[3505]
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[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
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[3507]
[3508]
[3509]
[3510]
[3511]
[3512]
[3513]
[3514]) (./nnet-pkg.tex
Chapter 26.
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<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  
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1}) has been already used, duplicate ignored
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l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  
[3515]
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 []         \T1/pcr/m/n/10 contrasts = NULL, Hess = FALSE, summ = 0, censored =
 FALSE,[] 
[3516]
[3517]
[3518]
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 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3519]
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 []\T1/pcr/m/n/9 targets <- matrix(c(rep(c(1,0,0),50), rep(c(0,1,0),50), rep(c(
0,0,1),50)),[] 
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 []\T1/pcr/m/n/9 ir1 <- nnet(ir[samp,], targets[samp,], size=2, rang=0.1, decay
=5e-4, maxit=200)[] 
[3520]
[3521]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 511--511
 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3522]) (./rpart-pkg.tex
Chapter 27.
[3523]
[3524]
[3525]
[3526]
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 []\T1/pcr/m/n/10 labels(object, digits = 4, minlength = 1L, pretty, collapse =
 TRUE, ...)[] 
[3527]
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\T1/ptm/m/n/10 age: []\T1/pcr/m/n/10 pretty = 0 []\T1/ptm/m/n/10 im-plies []\T1
/pcr/m/n/10 minlength = 0L[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pretty = NULL []\
T1/ptm/m/n/10 im-plies
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[3529]
[3530]
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[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , the leaf nodes wil
l be at the hor-i-zon-tal plot co-or-di-nates of
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[3532]
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 []     \T1/pcr/m/n/10 filename = paste(deparse(substitute(tree)), ".ps", sep =
 ""),[] 
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[]\T1/ptm/m/n/10 Logical. If []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault),
 adds to the la-bel
Underfull \hbox (badness 1142) in paragraph at lines 771--775
\T1/pcr/m/n/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method [
]\T1/pcr/m/n/10 class[]\T1/ptm/m/n/10 , \T1/pcr/m/n/10 n
[3533]
[3534]
[3535]
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 []\T1/pcr/m/n/9 predict(fit, type = "matrix") # level number, class frequencie
s, probabilities[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 934--934
 []\T1/pcr/m/n/10 print(x, minlength = 0, spaces = 2, cp, digits = getOption("d
igits"),[] 
[3536]
[3537]
[3538]
[3539]
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 []\T1/pcr/m/n/10 rpart(formula, data, weights, subset, na.action = na.rpart, m
ethod, 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1181--1181
 []      \T1/pcr/m/n/10 model = FALSE, x = FALSE, y = TRUE, parms, control, cos
t, ...)[] 
Underfull \hbox (badness 2846) in paragraph at lines 1243--1245
[]\T1/ptm/m/n/10 a list of op-tions that con-trol de-tails of the []\T1/pcr/m/n
/10 rpart []\T1/ptm/m/n/10 al-go-rithm. See
[3540]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1287--1287
 []\T1/pcr/m/n/9 par(mfrow = c(1,2), xpd = NA) # otherwise on some devices the 
text is clipped[] 
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 []\T1/pcr/m/n/10 rpart.control(minsplit = 20, minbucket = round(minsplit/3), c
p = 0.01, 
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 []              \T1/pcr/m/n/10 maxcompete = 4, maxsurrogate = 5, usesurrogate 
= 2, xval = 10,[] 
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[]\T1/ptm/m/n/10 the ploidy sta-tus of the tu-mor, from flow cy-tom-e-try. Val-
ues are `[]\T1/pcr/m/n/10 diploid[]\T1/ptm/m/n/10 ',
[3548]
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 []     \T1/pcr/m/n/10 pretty = NULL, digits = getOption("digits") - 3, use.n =
 FALSE,[] 
[3549]
[3550]
[3551]) (./spatial-pkg.tex
[3552]
Chapter 28.
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[3571]) (./survival-pkg.tex
[3572]
Chapter 29.
[3573]
[3574]
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 []\T1/pcr/m/n/9 aareg(formula = Surv(time, status) ~ age + sex + ph.ecog, data
 = lung, nmin = 1[] 
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 []\T1/pcr/m/n/9 ## Not run: lines(lfit2[4], col=2)  # Nearly the same, until t
he last point[] 
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 []\T1/pcr/m/n/9 # Chronic Granuomatous Disease.  See section 8.5 of Therneau a
nd Grambsch.[] 
[3575]
[3576]
Underfull \hbox (badness 6412) in paragraph at lines 284--286
[]\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as 
long as
[3577]
[3578]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml.1}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                  
[3579]
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 []\T1/pcr/m/n/9 fit <- coxph(Surv(futime, fustat) ~ resid.ds *rx + ecog.ps, da
ta = ovarian) 
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 []\T1/pcr/m/n/9 fit2 <- coxph(Surv(futime, fustat) ~ resid.ds +rx + ecog.ps, d
ata=ovarian)[] 
[3580]
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 []    \T1/pcr/m/n/10 survreg(Surv(time, status) ~ age + sex + factor(ph.ecog),
 lung)[] 
[3581]
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[]\T1/ptm/m/n/10 If H(t; z) is the pre-dicted cu-mu-la-tive haz-ard for an ob-s
er-va-tion with co-vari-ate vec-tor z,
[3582]
[3583]
[3584]
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 []\T1/pcr/m/n/9 py <- pseudo(survfit(Surv(time, status) ~1, lung), time=730) #
2 year survival 
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 []\T1/pcr/m/n/10 brier(fit, times, newdata, ties = TRUE, detail = FALSE, timef
ix = TRUE, 
[3585]
[3586]
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 []    \T1/pcr/m/n/10 method =c("Prentice","SelfPrentice","LinYing","I.Borgan",
"II.Borgan"),[] 
[3587]
[3588]
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 []   \T1/pcr/m/n/9 subcoh = ~subcohort, id=~seqno, stratum=~instit, cohort.siz
e=stratsizes,[] 
[3589]
[3590]
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[]\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi
al and negative-binomial data.
[3591]
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 []\T1/pcr/m/n/9 ppois(4, 10.24153)     #chance of seeing 4 or fewer events wit
h large rate[] 
[3592]
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 []\T1/pcr/m/n/9 ## Not run: clogit(case ~ spontaneous + induced + strata(strat
um), data=infert) 
[3593]
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 []\T1/pcr/m/n/9 marginal.model <- coxph(Surv(time, status) ~ rx, data= rats, c
luster=litter, 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1407 ...erapy for Stage B/C colon cancer}{colon}
                                                  
[3594]
[3595]
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 []  \T1/pcr/m/n/10 influence=0, ranks = FALSE, reverse=FALSE, timefix=TRUE, ke
epstrata=10, ...)[] 
[3596]
[3597]
[3598]
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 []\T1/pcr/m/n/9 options(na.action = na.exclude)   # predict all 1384 obs, incl
uding missing[] 
[3599]
[3600]
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 []\T1/pcr/m/n/10 cox.zph(fit, transform="km", terms=TRUE, singledf=FALSE, glob
al=TRUE) 
[3601]
[3602]
[3603]
[3604]
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[]\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f
ol-low the ad-vice of
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\T1/ptm/m/n/10 some cod-ing guides and prepend []\T1/pcr/m/n/10 survival:: []\T
1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the spe-
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\T1/ptm/m/n/10 cial terms, e.g., []\T1/pcr/m/n/10 survival::coxph(survival:Surv
(time, status) ~ age +
[3605]
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[][][]\T1/pcr/m/n/10 coxph.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
coxphms.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxph.control[][][]
[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cluster[][][][]\T1/ptm/m/n/10 , [][][]\
T1/pcr/m/n/10 strata[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Surv[][][][]\
T1/ptm/m/n/10 ,
[3606]
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 []\T1/pcr/m/n/10 iter.max = 20, toler.inf = sqrt(eps), outer.max = 10, timefix
=TRUE)[] 
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 [] \T1/pcr/m/n/9 [1] "extreme"     "logistic"    "gaussian"    "weibull"     "
exponential"[] 
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 []\T1/pcr/m/n/10 finegray(formula, data, weights, subset, na.action= na.pass, 
etype, 
[3616]
[3617]
[3618]
[3619]
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 []\T1/pcr/m/n/10 frailty.t(x, sparse = (nclass > 5), theta, df, eps = 1e-05, t
df = 5,[] 
[3620]
[3621]
[3622]
[3623]
Underfull \hbox (badness 1019) in paragraph at lines 3489--3491
[]\T1/ptm/m/n/10 outcome: []\T1/pcr/m/n/10 censor[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 thymic lymphoma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 reticulum cell sarcoma
 other
[3624]
[3625]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3634--3634
 []\T1/pcr/m/n/9 kfit <- coxph(Surv(time, status)~ age + sex + disease + frailt
y(id), kidney) 
[3626]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3669--3669
 []           \T1/pcr/m/n/9 factor(c(0, 1, 2,1,0,2), 0:2, c("censored", "progre
ssion", "death")))[] 
Underfull \hbox (badness 1389) in paragraph at lines 3683--3685
[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3694--3694
 []        \T1/pcr/m/n/10 conf.type = c("log", "log-log", "plain", "logit", "ar
csin"),[] 
[3627]
[3628]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3835--3835
 []                 \T1/pcr/m/n/9 rmap=list(sex=sex, age=age*365.35, year=as.Da
te(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 1979/01/01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3629]
[3630]
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 [] [] 
[3631]
[3632]
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 []\T1/pcr/m/n/9 # surprise) but their rates of conversion to PCM are essential
ly the same.[] 
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[3634]
[3635]
[3636]
[3637]
[3638]
[3639]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4549--4549
 []                    \T1/pcr/m/n/9 entry.dt = as.Date(paste("2011", 1:10, "5"
, sep=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 -\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3640]
[3641]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4699--4699
 []\T1/pcr/m/n/9 tdata <- data.frame(x= lung$age, y = 10*log(lung$age-35) + rno
rm(228, 0, 2))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4704--4704
 []\T1/pcr/m/n/9 knots <- unlist(attributes(fit1$model[[2]])[c(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 Boundary.knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , \TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )])[] 
[3642]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4708--4708
 []\T1/pcr/m/n/9 unname(coef(fit1)[-1] - coef(fit1)[1])  # differences: yhat[2:
4] - yhat[1][] 
[3643]
[3644]
[3645] [3646]
[3647]
[3648]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5131--5131
 [] \T1/pcr/m/n/10 pch=3, col=1, lty=1, lwd=1, cex=1, log=FALSE, xscale=1, ysca
le=1,[] 
[3649]
[3650]
[3651]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 5369--5369
 []\T1/pcr/m/n/10 se.fit=FALSE, na.action=na.pass, terms=names(object$assign), 
collapse,[] 
[3652]
[3653]
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 []\T1/pcr/m/n/9 mresid <- (lung$status-1) - predict(fit, type=\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 expected\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ) #Martingale resid[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 5530--5530
 []  \T1/pcr/m/n/9 predict(fit, reference="sample") + sum(coef(fit) * fit$means
, na.rm=TRUE)[] 
[3654]
[3655]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5616--5616
 []\T1/pcr/m/n/9 pct <- 1:98/100   # The 100th percentile of predicted survival
 is at +infinity[] 
[3656]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 5694--5694
 []  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars"), expand=FALSE
, ...)[] 
[3657]
Underfull \hbox (badness 1852) in paragraph at lines 5766--5768
[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.survfit"[]\T1/pt
m/m/n/10 , which is the re-sult of the
[3658]
[3659]
[3660]
[3661]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6020--6020
 []\T1/pcr/m/n/9 rhat <- predict(rfit, newdata=expand.grid(ph.ecog=0:3, sex=1:2
), se.fit=TRUE)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6032--6032
 []\T1/pcr/m/n/9 # the estimate for ph.ecog=3 is very unstable (n=1), pseudoval
ues smooth it.[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6034--6034
 []\T1/pcr/m/n/9 # In all the above we should be using the robust variance, e.g
., svyglm, but[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 6058--6058
 []\T1/pcr/m/n/10 pspline(x, df=4, theta, nterm=2.5 * df, degree=3, eps=0.1, me
thod, 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 6059--6059
 []   \T1/pcr/m/n/10 Boundary.knots=range(x), intercept=FALSE, penalty=TRUE, co
mbine, ...)[] 
[3662]
[3663]
[3664]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 6222--6222
 []  \T1/pcr/m/n/10 py <- pyears(futime ~ rx, rmap=list(age=age, sex=sex, year=
entry.dt),[] 
[3665]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6324--6324
 []\T1/pcr/m/n/9 pfit <- pyears(Surv(ptime/365.25, pstat) ~ temp.yr + temp.age 
+ sex,  mgus,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6345--6345
 []\T1/pcr/m/n/9 fit1 <- pyears(Surv(stop/365.25, event) ~ cut(age + 48, c(0,50
,60,70,100)) +[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6347--6347
 []\T1/pcr/m/n/9 fit2 <- pyears(Surv(stop/365.25, event) ~ tcut(age + 48, c(0,5
0,60,70,100)) +[] 
[3666]
[3667]
[3668]
[3669]
[3670]
[3671]
[3672]
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 []\T1/pcr/m/n/9 gfit <- survfit(Surv(day1, day2, status) ~ batch, braking, id=
 locomotive)[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 6803--6803
 []     \T1/pcr/m/n/9 xlab="Locomotive Age in Months", ylab="Mean cumulative nu
mber replacements")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6806--6806
 []\T1/pcr/m/n/9 #  natural target, an estimate of the number of replacements b
y a given time[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6808--6808
 []\T1/pcr/m/n/9 # When two valve seats failed at the same inspection, we need 
to jitter one[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6810--6810
 []\T1/pcr/m/n/9 ties <- which(with(valveSeat, diff(id)==0 & diff(time)==0))  #
first of a tie[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6814--6814
 []\T1/pcr/m/n/9 vdata$time1 <- ifelse(!duplicated(vdata$id), 0, c(0, temp[-len
gth(temp)]))[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 6841--6841
 []       \T1/pcr/m/n/10 collapse=FALSE, weighted= (type %in% c("dfbeta", "dfbe
tas")), ...)[] 
[3673]
[3674]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 6935--6935
 []    \T1/pcr/m/n/10 type="pstate", collapse=FALSE, weighted= collapse, data.f
rame=FALSE,[] 
[3675]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 7034--7034
 []\T1/pcr/m/n/10 residuals(object, type=c("response", "deviance","dfbeta","dfb
etas",[] 
Underfull \hbox (badness 1043) in paragraph at lines 7046--7049
[]\T1/pcr/m/n/10 "dfbetas"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "working"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "ldcase"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lsresp
"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ldshape"[]\T1/ptm/m/n/10 , and
[3676]
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[3678]
[3679]
[3680]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7353--7353
 []\T1/pcr/m/n/9 lfit1 <- survreg(Surv(time, status) ~ age + ridge(ph.ecog, the
ta=5), lung)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 7354--7354
 []\T1/pcr/m/n/9 lfit2 <- survreg(Surv(time, status) ~ sex + ridge(age, ph.ecog
, theta=1), lung)[] 
[3681]
[3682]
[3683]
Overfull \hbox (72.78088pt too wide) in paragraph at lines 7544--7544
 []\T1/pcr/m/n/10 rttright(formula, data, weights, subset, na.action, times, id
, timefix = TRUE, 
[3684]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 7627--7627
 []\T1/pcr/m/n/9 cdf <- cdf[!duplicated(aml$time[index], fromLast=TRUE)]  # rem
ove duplicate times[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7631--7631
 []\T1/pcr/m/n/9 wt2 <- rttright(Surv(dtime, death) ~ hormon, rotterdam, times=
 365*c(3, 5))[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7635 ...ata from a soldering experiment}{solder}
                                                  
[3685]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7690--7690
 []\T1/pcr/m/n/9 dummy <- expand.grid(Opening= c("S", "M", "L"), Solder=c("Thin
", "Thick"))[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 7692--7692
 []            \T1/pcr/m/n/9 dimnames=list(Opening= c("S", "M", "L"), Solder=c(
"Thin", "Thick")))[] 
[3686]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 7752--7752
 []\T1/pcr/m/n/10 statefig(layout, connect, margin = 0.03, box = TRUE, cex = 1,
 col = 1, 
[3687]
[3688]
[3689]
[3690]
[3691]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 8118--8118
 []\T1/pcr/m/n/10 event = TRUE, pyears = TRUE, expected = TRUE, rate = FALSE, r
r =expected,[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 8119--8119
 []\T1/pcr/m/n/10 ci.r = FALSE, ci.rr = FALSE, totals=FALSE, legend = TRUE, vli
ne = FALSE,[] 
[3692]
[3693]
[3694]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 8277--8277
 []  \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, dosum, ...
)[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 8280--8280
 []  \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, ...)[] 
[3695]
[3696]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 8471--8471
 []    \T1/pcr/m/n/10 type=c(\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 right\TS1/pcr/m/n/
10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 left\TS1/pcr/m/n/10 '\T1/p
cr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval\TS1/pcr/m/n/10 '\T1/pcr/m/
n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 counting\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 
, \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval2\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \T
S1/pcr/m/n/10 '\T1/pcr/m/n/10 mstate\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ),[] 
[3697]
[3698]
[3699]
Underfull \hbox (badness 1253) in paragraph at lines 8750--8753
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 median[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10
 quantile []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 meth-ods 
first con-struct a sur-vival curve us-ing
[3700]
[3701]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 8889--8889
 []\T1/pcr/m/n/10 survcheck(formula, data, subset, na.action, id, istate, istat
e0="(s0)", 
[3702]
[3703]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 9021--9021
 []\T1/pcr/m/n/10 survcondense(formula, data, subset, weights, na.action= na.pa
ss, id, 
[3704]
[3705]
[3706]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 9221--9221
 []\T1/pcr/m/n/9 check <- coxph(Surv(time, status) ~ factor(pat.karno) + strata
(inst), lung)[] 
[3707]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 9227--9227
 []                  \T1/pcr/m/n/9 rmap= list(age=(accept.dt - birth.dt), sex=1
, year=accept.dt),[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 9252--9252
 []        \T1/pcr/m/n/10 method=c("ederer", "hakulinen", "conditional", "indiv
idual.h",[] 
Underfull \hbox (badness 1038) in paragraph at lines 9294--9300
[]\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre
-dicted sur-vival
[3708]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 9346--9346
 []                      \T1/pcr/m/n/10 rmap = list(year=entry.dt, age=(birth.d
t-entry.dt)),[] 
[3709]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9432--9432
 []\T1/pcr/m/n/9 summary(fit1, times=1:10*182.5, scale=365) #expected survival 
by 1/2 years[] 
[3710]
[3711]
[3712]
Underfull \hbox (badness 10000) in paragraph at lines 9652--9657
[][][]\T1/pcr/m/n/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 survfit.object[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.survfit[][][][]\T1/ptm/m/n/10 
,
[3713]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 9672--9672
 []        \T1/pcr/m/n/10 se.fit=TRUE, conf.int=.95, individual=FALSE, stype=2,
 ctype,[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 9673--9673
 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 9678--9678
 []        \T1/pcr/m/n/10 se.fit=FALSE, conf.int=.95, individual=FALSE, stype=2
, ctype,[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 9679--9679
 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
[3714]
[3715]
[3716]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 9901--9901
 []        \T1/pcr/m/n/10 stype=1, ctype=1, id, cluster, robust, istate, timefi
x=TRUE,[] 
[3717]
Underfull \hbox (badness 4441) in paragraph at lines 10042--10052
[]\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio
n at the
[3718]
Underfull \hbox (badness 2653) in paragraph at lines 10054--10059
\T1/pcr/m/n/10 ctype=1[]\T1/ptm/m/n/10 , "fleming-harrington" which is equiv-a-
lent to []\T1/pcr/m/n/10 stype=2,
[3719]
[3720]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 10242--10242
 []\T1/pcr/m/n/9 #  There are no interval censored subjects, only left-censored
 (status=3),[] 
[3721]
[3722]
[3723]
[3724]
[3725]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 10674--10674
 []\T1/pcr/m/n/10 survfitcoxph.fit(y, x, wt, x2, risk, newrisk, strata, se.fit,
 survtype, 
[3726]
Underfull \hbox (badness 1354) in paragraph at lines 10715--10719
[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
[3727]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 10761--10761
 []\T1/pcr/m/n/10 survConcordance(formula, data, weights, subset, na.action) # 
use concordance 
[3728]
[3729]
Underfull \hbox (badness 2035) in paragraph at lines 10925--10932
\T1/ptm/m/n/10 it is as-sumed to name an el-e-ment from [][][]\T1/pcr/m/n/10 su
rvreg.distributions[][][][]\T1/ptm/m/n/10 .
Underfull \hbox (badness 10000) in paragraph at lines 10925--10932
\T1/ptm/m/n/10 These in-clude []\T1/pcr/m/n/10 "weibull"[]\T1/ptm/m/n/10 , []\T
1/pcr/m/n/10 "exponential"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "gaussian"[]\T1/p
tm/m/n/10 ,
Underfull \hbox (badness 1297) in paragraph at lines 10925--10932
[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 ,[]\T1/pcr/m/n/10 "lognormal" []\T1
/ptm/m/n/10 and []\T1/pcr/m/n/10 "loglogistic"[]\T1/ptm/m/n/10 . Oth-er-wise, i
t is
[3730]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 11015--11015
 []\T1/pcr/m/n/9 # There are multiple ways to parameterize a Weibull distributi
on. The survreg[] 
[3731]
[3732]
[3733]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 11172--11172
 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3734]
[3735]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11304--11304
 []                            \T1/pcr/m/n/9 temp/pi, -2 *x*temp, 2*temp^2*(4*x
^2*temp -1))[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 11307--11307
 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3736]
[3737]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 11483--11483
 []\T1/pcr/m/n/9 pfit2 <- pyears(Surv(years, death) ~ fgrp + agegrp, scale =100
0, data=test)[] 
[3738]
[3739]
[3740]
[3741]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 11712--11712
 []\T1/pcr/m/n/9 # The first data set contains data on 312 subjects in a clinic
al trial plus[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 11713--11713
 []\T1/pcr/m/n/9 # 106 that agreed to be followed off protocol, the second data
 set has data[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11719--11719
 []               \T1/pcr/m/n/9 protime = tdc(day, protime), alk.phos = tdc(day
, alk.phos))[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 11721--11721
 []\T1/pcr/m/n/9 fit <- coxph(Surv(tstart, tstop, endpt==2) ~ protime + log(bil
i), data=pbc2)[] 
[3742]
[3743]
[3744]
[3745]
[3746]
[3747]
[3748]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 12162--12162
 []\T1/pcr/m/n/10 levels, test = c("global", "trend", "pairwise"), predict = "l
inear",[] 
[3749]
[3750]
[3751])
[3752] (./fullrefman.ind
[3753]
[3754]
[3755]
[3756]
[3757]
[3758]
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[3761]
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[]\T1/pcr/m/n/10 %%,ddiMatrix,ndenseMatrix-method 
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[]\T1/pcr/m/n/10 %%,ndiMatrix,ddenseMatrix-method 
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[]\T1/pcr/m/n/10 %%,ndiMatrix,ldenseMatrix-method 
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[]\T1/pcr/m/n/10 %%,ndiMatrix,ndenseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,CsparseMatrix,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,CsparseMatrix,RsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,CsparseMatrix,TsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,CsparseMatrix,denseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,CsparseMatrix,diagonalMatrix-method 
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[]\T1/pcr/m/n/10 %&%,RsparseMatrix,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,RsparseMatrix,RsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,RsparseMatrix,TsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,RsparseMatrix,denseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,RsparseMatrix,diagonalMatrix-method 
[3802]
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[]\T1/pcr/m/n/10 %&%,TsparseMatrix,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,TsparseMatrix,RsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,TsparseMatrix,TsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,TsparseMatrix,denseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,TsparseMatrix,diagonalMatrix-method 
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[]\T1/pcr/m/n/10 %&%,denseMatrix,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,denseMatrix,denseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,denseMatrix,diagonalMatrix-method 
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[]\T1/pcr/m/n/10 %&%,diagonalMatrix,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,diagonalMatrix,denseMatrix-method 
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[]\T1/pcr/m/n/10 %&%,diagonalMatrix,diagonalMatrix-method 
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[]\T1/pcr/m/n/10 %&%,diagonalMatrix,matrix-method 
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[]\T1/pcr/m/n/10 %&%,diagonalMatrix,vector-method 
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[]\T1/pcr/m/n/10 %&%,matrix,diagonalMatrix-method 
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[]\T1/pcr/m/n/10 %&%,sparseVector,sparseVector-method 
[3803]
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[]\T1/pcr/m/n/10 %&%,vector,diagonalMatrix-method 
[3804]
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\T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
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[]\T1/pcr/m/n/10 all.equal,abIndex,abIndex-method 
[3805]
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[]\T1/pcr/m/n/10 all.equal,abIndex,numLike-method 
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[]\T1/pcr/m/n/10 all.equal,Matrix,sparseVector-method 
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[]\T1/pcr/m/n/10 all.equal,numLike,abIndex-method 
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[]\T1/pcr/m/n/10 all.equal,sparseVector,Matrix-method 
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[]\T1/pcr/m/n/10 all.equal,sparseVector,sparseVector-method 
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[]\T1/pcr/m/n/10 all.equal,sparseVector,vector-method 
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[]\T1/pcr/m/n/10 all.equal,vector,sparseVector-method 
[3806]
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[]\T1/pcr/m/n/10 Arith,CsparseMatrix,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,CsparseMatrix,numeric-method 
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[]\T1/pcr/m/n/10 Arith,ddenseMatrix,logical-method 
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[]\T1/pcr/m/n/10 Arith,ddenseMatrix,numeric-method 
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[]\T1/pcr/m/n/10 Arith,ddenseMatrix,sparseVector-method 
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[]\T1/pcr/m/n/10 Arith,dgCMatrix,dgCMatrix-method 
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[]\T1/pcr/m/n/10 Arith,dgeMatrix,dgeMatrix-method 
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[]\T1/pcr/m/n/10 Arith,dgeMatrix,sparseVector-method 
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[]\T1/pcr/m/n/10 Arith,dsCMatrix,dsCMatrix-method 
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[]\T1/pcr/m/n/10 Arith,dsparseMatrix,logical-method 
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[]\T1/pcr/m/n/10 Arith,dsparseMatrix,nsparseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,dsparseMatrix,numeric-method 
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[]\T1/pcr/m/n/10 Arith,dsparseVector,dsparseVector-method 
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[]\T1/pcr/m/n/10 Arith,dtCMatrix,dtCMatrix-method 
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[]\T1/pcr/m/n/10 Arith,lgCMatrix,lgCMatrix-method 
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[]\T1/pcr/m/n/10 Arith,lgeMatrix,lgeMatrix-method 
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[]\T1/pcr/m/n/10 Arith,lgTMatrix,lgTMatrix-method 
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[]\T1/pcr/m/n/10 Arith,logical,ddenseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,logical,dsparseMatrix-method 
[3807]
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[]\T1/pcr/m/n/10 Arith,lsparseMatrix,Matrix-method 
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[]\T1/pcr/m/n/10 Arith,lsparseMatrix,nsparseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,Matrix,lsparseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,Matrix,nsparseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,ngeMatrix,ngeMatrix-method 
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[]\T1/pcr/m/n/10 Arith,nsparseMatrix,dsparseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,nsparseMatrix,lsparseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,nsparseMatrix,Matrix-method 
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[]\T1/pcr/m/n/10 Arith,numeric,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,numeric,ddenseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,numeric,dsparseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,sparseVector,ddenseMatrix-method 
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[]\T1/pcr/m/n/10 Arith,sparseVector,dgeMatrix-method 
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[]\T1/pcr/m/n/10 Arith,sparseVector,sparseVector-method 
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[]\T1/pcr/m/n/10 Arith,triangularMatrix,diagonalMatrix-method 
[3808]
[3809]
[3810]
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[]\T1/pcr/m/n/10 aspell_write_personal_dictionary_file 
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\T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3811]
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\T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/
ptm/m/n/10 , 
[3813]
[3814]
[3815]
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[]\T1/pcr/m/n/10 chol2inv,triangularMatrix-method 
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[]\T1/pcr/m/n/10 Cholesky,triangularMatrix-method 
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\T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/
ptm/m/n/10 , 
[3816]
[3817]
[3818]
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[]\T1/pcr/m/n/10 coerce,BunchKaufman,dtrMatrix-method 
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[]\T1/pcr/m/n/10 coerce,CHMsimpl,dtCMatrix-method 
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[]\T1/pcr/m/n/10 coerce,CHMsuper,dgCMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Cholesky,dtrMatrix-method 
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[]\T1/pcr/m/n/10 coerce,copMatrix,corMatrix-method 
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[]\T1/pcr/m/n/10 coerce,corMatrix,copMatrix-method 
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[]\T1/pcr/m/n/10 coerce,dgCMatrix,matrix.csc-method 
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[]\T1/pcr/m/n/10 coerce,dgRMatrix,matrix.csr-method 
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[]\T1/pcr/m/n/10 coerce,dgTMatrix,matrix.coo-method 
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[]\T1/pcr/m/n/10 coerce,diagonalMatrix,symmetricMatrix-method 
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[]\T1/pcr/m/n/10 coerce,diagonalMatrix,triangularMatrix-method 
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[]\T1/pcr/m/n/10 coerce,dpoMatrix,corMatrix-method 
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[]\T1/pcr/m/n/10 coerce,dpoMatrix,dppMatrix-method 
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[]\T1/pcr/m/n/10 coerce,dppMatrix,copMatrix-method 
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[]\T1/pcr/m/n/10 coerce,dppMatrix,dpoMatrix-method 
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[]\T1/pcr/m/n/10 coerce,dspMatrix,copMatrix-method 
[3819]
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[]\T1/pcr/m/n/10 coerce,dspMatrix,dppMatrix-method 
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[]\T1/pcr/m/n/10 coerce,dsyMatrix,corMatrix-method 
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[]\T1/pcr/m/n/10 coerce,dsyMatrix,dpoMatrix-method 
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[]\T1/pcr/m/n/10 coerce,factor,sparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,generalMatrix,packedMatrix-method 
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[]\T1/pcr/m/n/10 coerce,graph,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,graph,RsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,graph,sparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,graph,TsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,graphAM,TsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,graphNEL,TsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,ddenseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,denseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,denseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,diagonalMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,diagonalMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,dsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,dsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,generalMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,generalMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,ldenseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,ldenseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,lsparseMatrix-method 
[3820]
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[]\T1/pcr/m/n/10 coerce,matrix,lsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,ndenseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,ndenseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,nsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,packedMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,packedMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,RsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,sparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,sparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,sparseVector-method 
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[]\T1/pcr/m/n/10 coerce,matrix,sparseVector-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,symmetricMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,symmetricMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,triangularMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,triangularMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,TsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,Matrix,unpackedMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix,unpackedMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix.coo,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix.coo,dgCMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix.coo,dgTMatrix-method 
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[]\T1/pcr/m/n/10 coerce,matrix.csc,CsparseMatrix-method 
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@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
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[33] [34] [35] [36] [37]
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@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
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[39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] Chapter 10 [46] [47] )
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[33] [34] [35] [36] [37]
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[71] (Function and variable index) [72]
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[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14]
Chapter 3 [15] [16] [17] Chapter 4 [18] [19] [20] Chapter 5 [21] Chapter 6
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[35] [36] Appendix A [37] [38] [39]
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[71] (Function and variable index) [72]
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[15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23]
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[15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23]
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 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
[57]
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 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf
ig CXXPICFLAGS^^R[] 
[58] [59] [60] [61] [62]
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 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 
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 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 
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 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
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version 52.0[] 
[63]
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e looked for
[64] [65] [66] [67] [68] [69]
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gnu.  org/  onlinedocs/  gcc/
[70] [71]
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 []@texttt 
register
 storage class specifier is deprecated and incompatible with C++17[] 
[72] [73]
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kdenestmlcvb
 :: kdenestmlcvb[] 
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double) nelem);[] 
[74]
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[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[75] [76] [77] [78] [79] [80] [81]
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[]@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https://  R-Forge.  r-pro
ject.  org[]@textrm )[]) and RForge
Chapter 2 [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[95] [96]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
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 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[97] [98] [99] Chapter 3 [100] [101] [102] [103] [104] [105]
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 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[106] Chapter 4 [107] [108] [109] [110] [111]
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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[112] [113] [114]
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@textrm See [][]@texttt https://  clang.  llvm.  org/  docs/  UsersManual.  htm
l#  controlling-code-generation[][]@textrm ,
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[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[115]
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alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0
[] 
[116]
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[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by
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@texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and 
we have seen
[117]
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fno-omit-frame-pointer[] 
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o -fno-omit-frame-pointer -frtti[] 
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tandalone[] 
[118]
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 []@texttt Fortran runtime error: Index 
1
 of dimension 1 of array 
x
 above upper bound of 0[] 
[119] [120] [121] [122]
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[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][]@smallrm :
[123]
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ddot
 does not match original declaration [-Wlto-type-mismatch][] 
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dstup
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dqrdc
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[124]
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 []@texttt Warning: Type mismatch in argument 
jpvt
 at (1); passed REAL(8) to INTEGER(4)[] 
Chapter 5 [125] [126] [127] [128] [129] [130] [131] [132] [133] [134]
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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[135] [136]
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 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[137] [138] [139] [140] [141]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163]
[164]
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NilValue);[] 
[165]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[166] Chapter 6 [167] [168] [169] [170] [171] [172] [173] [174] [175] [176]
[177] [178] [179] [180] [181] [182] [183] [184]
Warning: unbalanced parentheses in @def... [185] [186]
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, void *hdata)[] 
[187] [188] [189] [190]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [191] [192] Chapter 8 [193] [194] [195]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s
tatic libR[] 
[196]
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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[197] [198] [199] [200] [201] [202]
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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[203] [204] (Function and variable index) [205]
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(Concept index) [206]
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[207] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pf
b>
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[-5] (/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.toc)
(/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.toc) (Acknowledgements)
(/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.aux) Chapter 1 [1]
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[2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14]
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars.ucrt[]@textrm ,
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 @texttt ~/.R/Makevars.win64[]@textrm ,
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars.ucrt[]@textrm ,
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 @texttt ~/.R/Makevars.win64[]@textrm ,
[15] [16] [17] [18]
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 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 
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 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 
[19]
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[][]@texttt https://  sourceforge.  net/  projects/  tktable/  files/  tktable/
  2.  10/  Tktable2.  10.  tar.  gz/
[20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 
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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[31] [32] [33]
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[][][]@smallrm Some changes are linked from [][]@smalltt https://  isocpp.  org
/  std/  standing-documents/
[34]
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[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][] @smallrm or
[35]
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 []            @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX
17PICFLAGS)")[] 
[36] [37]
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@textrm ([][]@texttt https://  cmake.  org/  cmake/  help/  latest/  manual/  c
make-env-variables.  7.  html#
[38]
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 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
[54] [55] [56]
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ILITY)" \[] 
[57]
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 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf
ig CXXPICFLAGS^^R[] 
[58] [59] [60] [61] [62]
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 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 
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 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 
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 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
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 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[63]
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e looked for
[64] [65] [66] [67] [68]
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 @texttt gcc/  C-Extensions.  html[][] @textrm and [][]@texttt https://  gcc.  
gnu.  org/  onlinedocs/  gcc/
[69] [70] [71]
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 []@texttt 
register
 storage class specifier is deprecated and incompatible with C++17[] 
[72] [73]
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 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 
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 []    @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), (
double) nelem);[] 
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[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[74] [75] [76] [77] [78] [79] [80] [81]
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[]@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https://  R-Forge.  r-pro
ject.  org[]@textrm )[]) and RForge
Chapter 2 [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94]
Underfull \hbox (badness 10000) in paragraph at lines 8330--8337
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[95] [96]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
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 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[97] [98] [99] Chapter 3 [100] [101] [102] [103] [104] [105]
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 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[106] Chapter 4 [107] [108] [109] [110] [111]
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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[112] [113] [114]
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@textrm See [][]@texttt https://  clang.  llvm.  org/  docs/  UsersManual.  htm
l#  controlling-code-generation[][]@textrm ,
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[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[115]
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 []@texttt setenv ASAN_OPTIONS 
alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0
[] 
[116]
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[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by
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@texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and 
we have seen
[117]
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fno-omit-frame-pointer[] 
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o -fno-omit-frame-pointer -frtti[] 
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tandalone[] 
[118]
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1
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x
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[119] [120] [121] [122]
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[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][]@smallrm :
[123]
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ddot
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 []@texttt rkpk2.f:77:5: warning: type of 
dstup
 does not match original declaration [-Wlto-type-mismatch][] 
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 []@texttt reg.f:78:33: warning: type of 
dqrdc
 does not match original declaration [-Wlto-type-mismatch][] 
[124]
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 []@texttt Warning: Type mismatch in argument 
jpvt
 at (1); passed REAL(8) to INTEGER(4)[] 
Chapter 5 [125] [126] [127] [128] [129] [130] [131] [132] [133] [134]
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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[135] [136]
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 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[137] [138] [139] [140] [141]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163]
[164]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[165]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[166] Chapter 6 [167] [168] [169] [170] [171] [172] [173] [174] [175] [176]
[177] [178] [179] [180] [181] [182] [183] [184]
Warning: unbalanced parentheses in @def... [185] [186]
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 []                               @texttt SEXP (*hndlr)(SEXP cond, void *hdata)
, void *hdata)[] 
[187] [188] [189] [190]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [191] [192] Chapter 8 [193] [194] [195]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s
tatic libR[] 
[196]
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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[197] [198] [199] [200] [201] [202]
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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[203] [204] (Function and variable index) [205]
(/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.vrs [206] [207] [208] [209])
(Concept index) [210] (/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.cps
[211]) [212] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sh
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ts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
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cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
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Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
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(/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.toc [-1] [-2] [-3] [-4])
[-5] (/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.toc)
(/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.toc) (Acknowledgements)
(/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.aux) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14]
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars.ucrt[]@textrm ,
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 @texttt ~/.R/Makevars.win64[]@textrm ,
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars.ucrt[]@textrm ,
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 @texttt ~/.R/Makevars.win64[]@textrm ,
[15] [16] [17] [18]
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 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 
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 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 
[19]
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[][]@texttt https://  sourceforge.  net/  projects/  tktable/  files/  tktable/
  2.  10/  Tktable2.  10.  tar.  gz/
[20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 
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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[31] [32] [33]
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[][][]@smallrm Some changes are linked from [][]@smalltt https://  isocpp.  org
/  std/  standing-documents/
[34]
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[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][] @smallrm or
[35]
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 []            @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX
17PICFLAGS)")[] 
[36] [37]
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@textrm ([][]@texttt https://  cmake.  org/  cmake/  help/  latest/  manual/  c
make-env-variables.  7.  html#
[38]
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 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
[54] [55] [56]
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 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
[57]
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 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf
ig CXXPICFLAGS^^R[] 
[58] [59] [60] [61] [62]
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 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 
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 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 
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 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
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 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[63]
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 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b
e looked for
[64] [65] [66] [67] [68]
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 @texttt gcc/  C-Extensions.  html[][] @textrm and [][]@texttt https://  gcc.  
gnu.  org/  onlinedocs/  gcc/
[69] [70] [71]
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 []@texttt 
register
 storage class specifier is deprecated and incompatible with C++17[] 
[72] [73]
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 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 
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 []    @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), (
double) nelem);[] 
Underfull \hbox (badness 10000) in paragraph at lines 6553--6554
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[74] [75] [76] [77] [78] [79] [80] [81]
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[]@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https://  R-Forge.  r-pro
ject.  org[]@textrm )[]) and RForge
Chapter 2 [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94]
Underfull \hbox (badness 10000) in paragraph at lines 8330--8337
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[95] [96]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
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 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[97] [98] [99] Chapter 3 [100] [101] [102] [103] [104] [105]
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 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[106] Chapter 4 [107] [108] [109] [110] [111]
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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[112] [113] [114]
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@textrm See [][]@texttt https://  clang.  llvm.  org/  docs/  UsersManual.  htm
l#  controlling-code-generation[][]@textrm ,
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[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[115]
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 []@texttt setenv ASAN_OPTIONS 
alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0
[] 
[116]
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[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by
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@texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and 
we have seen
[117]
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 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero -
fno-omit-frame-pointer[] 
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 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer
o -fno-omit-frame-pointer -frtti[] 
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 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/
libclang_rt.ubsan_standalone_cxx.a[] 
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 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s
tandalone[] 
[118]
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 []@texttt Fortran runtime error: Index 
1
 of dimension 1 of array 
x
 above upper bound of 0[] 
[119] [120] [121] [122]
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[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][]@smallrm :
[123]
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 []@texttt boot.f:61: warning: type of 
ddot
 does not match original declaration [-Wlto-type-mismatch][] 
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 []@texttt rkpk2.f:77:5: warning: type of 
dstup
 does not match original declaration [-Wlto-type-mismatch][] 
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 []@texttt reg.f:78:33: warning: type of 
dqrdc
 does not match original declaration [-Wlto-type-mismatch][] 
[124]
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 []@texttt Warning: Type mismatch in argument 
jpvt
 at (1); passed REAL(8) to INTEGER(4)[] 
Chapter 5 [125] [126] [127] [128] [129] [130] [131] [132] [133] [134]
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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[135] [136]
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 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[137] [138] [139] [140] [141]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163]
[164]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[165]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[166] Chapter 6 [167] [168] [169] [170] [171] [172] [173] [174] [175] [176]
[177] [178] [179] [180] [181] [182] [183] [184]
Warning: unbalanced parentheses in @def... [185] [186]
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 []                               @texttt SEXP (*hndlr)(SEXP cond, void *hdata)
, void *hdata)[] 
[187] [188] [189] [190]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [191] [192] Chapter 8 [193] [194] [195]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s
tatic libR[] 
[196]
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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[197] [198] [199] [200] [201] [202]
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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[203] [204] (Function and variable index) [205]
(/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.vrs [206] [207] [208] [209])
(Concept index) [210] (/builddir/build/BUILD/R-4.4.3/doc/manual/R-exts.cps
[211]) [212] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
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[14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] </bu
ilddir/build/BUILD/R-4.4.3/doc/manual/images/hist.pdf> [34] </builddir/build/BU
ILD/R-4.4.3/doc/manual/images/ecdf.pdf> </builddir/build/BUILD/R-4.4.3/doc/manu
al/images/QQ.pdf> [35] [36] </builddir/build/BUILD/R-4.4.3/doc/manual/images/ic
e.pdf> [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45]
[46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] </builddir/bu
ild/BUILD/R-4.4.3/doc/manual/images/fig11.pdf> [70] </builddir/build/BUILD/R-4.
4.3/doc/manual/images/fig12.pdf> [71] [72] [73] Chapter 13 [74] [75]
Chapter 14 [76] [77]
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[78] Appendix A [79] [80] [81] Appendix B [82] [83] [84] [85] [86] [87]
[88] Appendix C [89] [90] Appendix D [91]
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(/builddir/build/BUILD/R-4.4.3/doc/manual/R-intro.toc) (Preface)
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13]
[14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] </bu
ilddir/build/BUILD/R-4.4.3/doc/manual/images/hist.pdf> [34] </builddir/build/BU
ILD/R-4.4.3/doc/manual/images/ecdf.pdf> </builddir/build/BUILD/R-4.4.3/doc/manu
al/images/QQ.pdf> [35] [36] </builddir/build/BUILD/R-4.4.3/doc/manual/images/ic
e.pdf> [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45]
[46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] </builddir/bu
ild/BUILD/R-4.4.3/doc/manual/images/fig11.pdf> [70] </builddir/build/BUILD/R-4.
4.3/doc/manual/images/fig12.pdf> [71] [72] [73] Chapter 13 [74] [75]
Chapter 14 [76] [77]
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[78] Appendix A [79] [80] [81] Appendix B [82] [83] [84] [85] [86] [87]
[88] Appendix C [89] [90] Appendix D [91]
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[94] (/builddir/build/BUILD/R-4.4.3/doc/manual/R-intro.cps [95]) Appendix F
[96] [97] )
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(/builddir/build/BUILD/R-4.4.3/doc/manual/R-intro.toc) (Preface)
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13]
[14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] </bu
ilddir/build/BUILD/R-4.4.3/doc/manual/images/hist.pdf> [34] </builddir/build/BU
ILD/R-4.4.3/doc/manual/images/ecdf.pdf> </builddir/build/BUILD/R-4.4.3/doc/manu
al/images/QQ.pdf> [35] [36] </builddir/build/BUILD/R-4.4.3/doc/manual/images/ic
e.pdf> [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45]
[46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] </builddir/bu
ild/BUILD/R-4.4.3/doc/manual/images/fig11.pdf> [70] </builddir/build/BUILD/R-4.
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Chapter 14 [76] [77]
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[78] Appendix A [79] [80] [81] Appendix B [82] [83] [84] [85] [86] [87]
[88] Appendix C [89] [90] Appendix D [91]
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[94] (/builddir/build/BUILD/R-4.4.3/doc/manual/R-intro.cps [95]) Appendix F
[96] [97] )
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[17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27]
[28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36]
[37] [38] [39] [40] [41] [42] [43] Chapter 7 [44]
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@textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal
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[45] Chapter 8 [46]
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hoice of
[48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60]
Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64]
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atrix 1.2-6[] 
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Ops
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 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27]
[28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36]
[37] [38] [39] [40] [41] [42] [43] Chapter 7 [44]
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solves to
[45] Chapter 8 [46]
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s://  CRAN.  R-project.  org/
[47]
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 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c
hoice of
[48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60]
Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64]
(Function and variable index) [65]
(/builddir/build/BUILD/R-4.4.3/doc/manual/R-ints.vrs [66]) (Concept index)
[67] (/builddir/build/BUILD/R-4.4.3/doc/manual/R-ints.cps) [68] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27]
[28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36]
[37] [38] [39] [40] [41] [42] [43] Chapter 7 [44]
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@textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal
ly,
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@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link, as
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@textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re-
solves to
[45] Chapter 8 [46]
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 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http
s://  CRAN.  R-project.  org/
[47]
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 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c
hoice of
[48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60]
Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64]
(Function and variable index) [65]
(/builddir/build/BUILD/R-4.4.3/doc/manual/R-ints.vrs [66]) (Concept index)
[67] (/builddir/build/BUILD/R-4.4.3/doc/manual/R-ints.cps) [68] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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[3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
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[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[46] [47] [48] [49] [50] (Function and Variable Index) [51]
No file R-lang.vrs.
(Concept Index) [52]
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Appendix A [53] [54] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
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[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
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[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
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[46] [47] [48] [49] [50] (Function and Variable Index) [51]
(/builddir/build/BUILD/R-4.4.3/doc/manual/R-lang.vrs [52]) (Concept Index)
[53] (/builddir/build/BUILD/R-4.4.3/doc/manual/R-lang.cps) Appendix A [54]
[55] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
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[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
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[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
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[46] [47] [48] [49] [50] (Function and Variable Index) [51]
(/builddir/build/BUILD/R-4.4.3/doc/manual/R-lang.vrs [52]) (Concept Index)
[53] (/builddir/build/BUILD/R-4.4.3/doc/manual/R-lang.cps) Appendix A [54]
[55] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/doc'
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-intro.info.utf8 doc/manual/R-intro.info
+ mv doc/manual/R-intro.info.utf8 doc/manual/R-intro.info
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info
+ mv doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/FAQ.utf8 doc/FAQ
+ mv doc/FAQ.utf8 doc/FAQ
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-admin.info.utf8 doc/manual/R-admin.info
+ mv doc/manual/R-admin.info.utf8 doc/manual/R-admin.info
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1
+ mv doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.u0jvFn
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64
++ dirname /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd R-4.4.3
+ make DESTDIR=/builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64 install install-pdf install-info
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/m4'
make[1]: Nothing to be done for 'install'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/m4'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/tools'
make[1]: Nothing to be done for 'install'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/tools'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/doc'
installing doc ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/doc/R
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/man/man1
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/doc/html'
installing doc/html ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/doc/R/html
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/doc/html'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/doc/manual'
installing doc/manual ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/doc/R/manual
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/doc/R/manual/images
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/doc'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/etc'
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/etc
installing etc ...
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/etc'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/share'
installing share ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/R
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/dictionaries
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/encodings
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/java
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/licenses
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/make
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/Rd
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/Rd/macros
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/sh
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/texmf
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/texmf/bibtex/bib
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/texmf/bibtex/bst
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/texmf/tex/latex
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/share'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/src'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/scripts'
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/bin
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/scripts'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/include'
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/include/R
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/include/R_ext'
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/include/R/R_ext
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/include/R_ext'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/include'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/extra'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/extra/blas'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/extra/blas'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/extra/tre'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/extra/tre'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/extra/tzone'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/extra/tzone'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/extra/xdr'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/extra/xdr'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/extra/intl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/extra/intl'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/extra'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/appl'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/appl'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/nmath'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/nmath'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection     -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   -DR_HOME='"/usr/lib64/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/pkgconfig
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/unix'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/main'
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/exec
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/main'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/main'
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/lib
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/main'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/main'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/internet'
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/modules
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/internet'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/lapack'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/lapack'
make[3]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/modules/X11'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules/X11'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/modules'
make[2]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/library'
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library
installing packages ...
  building HTML index ...
make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/library'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/tests'
make[1]: Nothing to be done for 'install'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/tests'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/doc/manual'
installing R manuals in PDF format ...
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/doc/manual'
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/doc/manual'
mkdir -p -- /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/info"
installing R info pages ...
updating '/usr/share/info/dir' ...
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/doc/manual'
+ rm -f /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/info/dir
+ mkdir -p /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/doc/R
+ install -p CAPABILITIES /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/doc/R
+ cd src/nmath/standalone
+ make install DESTDIR=/builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64
make[1]: Entering directory '/builddir/build/BUILD/R-4.4.3/src/include'
make[1]: 'Rmath.h' is up to date.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.3/src/include'
+ mkdir -p /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/etc/ld.so.conf.d
+ echo /usr/lib64/R/lib
+ mkdir -p /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/library
+ touch -r README /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/doc/R/CAPABILITIES
+ touch -r README doc/manual/R-FAQ.pdf doc/manual/R-admin.pdf doc/manual/R-data.pdf doc/manual/R-exts.pdf doc/manual/R-intro.pdf doc/manual/R-ints.pdf doc/manual/R-lang.pdf doc/manual/fullrefman.pdf
+ touch -r README /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/bin/R
+ sed -i 's|\..\/\..|/usr/lib64/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/doc/R/html/packages.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/KernSmooth/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/KernSmooth/html/bkde.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/KernSmooth/html/bkde2D.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/KernSmooth/html/bkfe.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/KernSmooth/html/dpih.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/KernSmooth/html/dpik.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/KernSmooth/html/dpill.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/KernSmooth/html/locpoly.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Aids2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Animals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Boston.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Cars93.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Cushings.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/DDT.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/GAGurine.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Insurance.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/MASS-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Melanoma.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Null.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/OME.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Pima.tr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Rabbit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Rubber.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/SP500.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Sitka.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Sitka89.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Skye.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/Traffic.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/UScereal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/UScrime.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/VA.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/abbey.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/accdeaths.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/addterm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/anorexia.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/anova.negbin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/area.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/bacteria.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/bandwidth.nrd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/bcv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/beav1.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/beav2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/biopsy.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/birthwt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/boxcox.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/cabbages.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/caith.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/cats.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/cement.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/chem.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/con2tr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/confint.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/contr.sdif.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/coop.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/corresp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/cov.rob.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/cov.trob.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/cpus.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/crabs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/deaths.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/denumerate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/dose.p.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/drivers.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/dropterm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/eagles.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/epil.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/eqscplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/farms.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/fgl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/fitdistr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/forbes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/fractions.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/galaxies.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/gamma.dispersion.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/gamma.shape.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/gehan.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/genotype.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/geyser.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/gilgais.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/ginv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/glm.convert.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/glm.nb.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/glmmPQL.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/hills.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/hist.scott.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/housing.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/huber.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/hubers.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/immer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/isoMDS.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/kde2d.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/lda.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/ldahist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/leuk.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/lm.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/lm.ridge.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/loglm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/loglm1.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/logtrans.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/lqs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/mammals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/mca.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/mcycle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/menarche.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/michelson.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/minn38.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/motors.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/muscle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/mvrnorm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/negative.binomial.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/newcomb.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/nlschools.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/npk.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/npr1.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/oats.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/painters.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/pairs.lda.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/parcoord.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/petrol.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/phones.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/plot.lda.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/plot.mca.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/polr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/predict.glmmPQL.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/predict.lda.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/predict.lqs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/predict.mca.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/predict.qda.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/profile.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/qda.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/quine.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/rational.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/renumerate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/rlm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/rms.curv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/rnegbin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/road.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/rotifer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/sammon.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/ships.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/shoes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/shrimp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/shuttle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/snails.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/stdres.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/steam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/stepAIC.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/stormer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/studres.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/summary.loglm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/summary.negbin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/summary.rlm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/survey.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/synth.tr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/theta.md.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/topo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/truehist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/ucv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/waders.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/whiteside.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/width.SJ.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/write.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/MASS/html/wtloss.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/BunchKaufman-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/BunchKaufman-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/CAex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/CHMfactor-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Cholesky-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Cholesky-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/CsparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Diagonal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Hilbert.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/KNex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/KhatriRao.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Matrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Matrix-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Matrix-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Matrix-notyet.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/MatrixClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/MatrixFactorization-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/RsparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Schur-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/Schur-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/TsparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/USCounties.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/abIndex-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/abIseq.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/all.equal-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/asUniqueT.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/band-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/bandSparse.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/bdiag.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/boolmatmult-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/cbind2-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/chol-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/chol2inv-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/coerce-methods-SparseM.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/coerce-methods-graph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/colSums-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/condest.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/ddenseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/ddiMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/denseLU-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/denseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dgCMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dgRMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dgTMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dgeMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/diagU2N.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/diagonalMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dimScale.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dmperm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dpoMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/drop0.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dsCMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dsRMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dsparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dsyMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dtCMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dtRMatrix-class-sparse.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dtpMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/dtrMatrix-class-dense.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/expand-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/expm-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/externalFormats.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/facmul-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/fastMisc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/forceSymmetric-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/formatSparseM.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/generalMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/image-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/indMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/index-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/invertPerm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/is.na-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/is.null.DN.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/isSymmetric-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/isTriangular-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/kronecker-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/ldenseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/ldiMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/lgeMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/lsparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/lsyMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/ltrMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/lu-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/mat2triplet.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/matmult-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/nMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/ndenseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/nearPD.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/ngeMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/nnzero-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/norm-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/nsparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/nsyMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/ntrMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/pMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/pack-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/packedMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/printSpMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/qr-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/rankMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/rcond-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/rep2abI.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/rleDiff-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/rsparsematrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/solve-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/spMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/sparse.model.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/sparseLU-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/sparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/sparseMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/sparseQR-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/sparseVector-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/sparseVector.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/subassign-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/subscript-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/symmetricMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/symmpart-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/triangularMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/unpackedMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/updown-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/Matrix/html/wrld_1deg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Arithmetic.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/AsIs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Bessel.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/CallExternal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Colon.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Comparison.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Constants.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Control.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Cstack_info.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/DateTimeClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Dates.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Encoding.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/EnvVar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Extract.data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Extract.factor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Extract.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Extremes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Foreign-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Foreign.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Hyperbolic.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/ISOdatetime.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/InternalMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/La_library.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/La_version.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Last.value.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Log.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Logic.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/LongVectors.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/MathFun.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Memory-limits.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Memory.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/NA.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/NULL.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/NumericConstants.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Ops.Date.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Paren.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Platform.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Primitive.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Quotes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Random-user.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Random.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/RdUtils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Recall.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Reserved.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Rhome.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Round.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/S3method.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Signals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Special.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/StackOverflows.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Startup.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Syntax.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.getenv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.getpid.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.glob.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.info.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.localeconv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.readlink.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.setFileTime.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.setenv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.sleep.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.time.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Sys.which.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Tailcall.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Trig.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/UTF8filepaths.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/UseMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Vectorize.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/Version.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/abbreviate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/agrep.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/all.equal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/all.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/allnames.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/any.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/aperm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/append.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/apply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/args.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/array.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/array2DF.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/as.Date.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/as.POSIXlt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/as.data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/as.environment.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/as.function.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/asplit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/assign.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/assignOps.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/attach.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/attr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/attributes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/autoload.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/backsolve.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/balancePOSIXlt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/base-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/base-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/base-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/base-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/basename.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/bincode.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/bindenv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/bitwise.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/body.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/bquote.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/browser.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/browserText.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/builtins.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/by.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/c.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/call.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/callCC.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/capabilities.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/cat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/cbind.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/char.expand.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/character.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/charmatch.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/chartr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/chkDots.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/chol.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/chol2inv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/chooseOpsMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/col.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/colSums.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/colnames.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/commandArgs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/comment.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/complex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/conditions.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/conflicts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/connections.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/contributors.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/copyright.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/crossprod.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/cumsum.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/curlGetHeaders.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/cut.POSIXt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/cut.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/data.class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/data.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/dataframeHelpers.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/date.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/dcf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/debug.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/declare.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/delayedAssign.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/deparse.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/deparseOpts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/det.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/detach.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/dev.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/diag.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/diff.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/difftime.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/dim.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/dimnames.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/do.call.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/dontCheck.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/dots.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/double.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/dput.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/drop.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/droplevels.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/dump.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/duplicated.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/dynload.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/eapply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/eigen.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/encodeString.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/environment.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/eval.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/exists.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/expand.grid.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/expression.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/extSoftVersion.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/factor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/file.access.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/file.choose.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/file.info.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/file.path.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/file.show.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/files.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/files2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/find.package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/findInterval.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/force.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/forceAndCall.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/formals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/format.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/format.info.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/format.pval.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/formatDL.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/formatc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/function.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/funprog.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/gc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/gc.time.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/gctorture.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/get.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/getCallingDLL.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/getDLLRegisteredRoutines.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/getLoadedDLLs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/getNativeSymbolInfo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/gettext.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/getwd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/gl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/grep.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/grepRaw.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/groupGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/grouping.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/gzcon.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/hexmode.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/iconv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/icuSetCollate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/identical.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/identity.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/ifelse.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/integer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/interaction.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/interactive.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/invisible.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/is.finite.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/is.function.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/is.language.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/is.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/is.recursive.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/is.single.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/is.unsorted.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/isS4.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/isSymmetric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/jitter.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/kappa.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/kronecker.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/l10n_info.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/labels.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/lapply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/lazyload.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/length.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/lengths.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/levels.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/libPaths.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/libcurlVersion.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/library.dynam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/library.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/license.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/list.files.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/list.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/list2DF.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/list2env.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/load.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/locales.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/logical.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/lower.tri.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/ls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/make.names.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/make.unique.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/mapply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/marginSums.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/mat.or.vec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/match.arg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/match.call.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/match.fun.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/match.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/matmult.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/maxCol.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/mean.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/memCompress.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/memlimits.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/memory.profile.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/merge.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/message.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/missing.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/mode.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/mtfrm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/name.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/names.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/nargs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/nchar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/nlevels.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/noquote.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/norm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/normalizePath.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/notyet.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/nrow.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/ns-dblcolon.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/ns-hooks.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/ns-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/ns-load.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/ns-reflect.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/ns-topenv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/numeric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/numeric_version.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/octmode.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/on.exit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/options.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/order.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/outer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/parse.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/paste.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/path.expand.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/pcre_config.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/pipeOp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/plot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/pmatch.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/polyroot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/pos.to.env.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/pretty.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/print.dataframe.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/print.default.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/print.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/prmatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/proc.time.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/prod.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/proportions.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/pushBack.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/qr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/qraux.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/quit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/range.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/rank.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/rapply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/raw.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/rawConnection.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/rawConversion.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/readBin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/readChar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/readLines.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/readRDS.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/readRenviron.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/readline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/reg.finalizer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/regex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/regmatches.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/rep.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/replace.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/rev.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/rle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/rm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/round.POSIXt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/row.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/row.names.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/rowsum.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sQuote.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sample.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/save.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/scale.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/scan.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/search.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/seek.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/seq.Date.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/seq.POSIXt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/seq.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sequence.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/serialize.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/setTimeLimit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sets.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/shQuote.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/showConnections.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sign.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sink.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/slice.index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/slotOp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/socketSelect.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/solve.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sort.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sort_by.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/source.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/split.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sprintf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/srcfile.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/standardGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/startsWith.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/stop.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/stopifnot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/strptime.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/strrep.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/strsplit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/strtoi.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/strtrim.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/structure.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/strwrap.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/subset.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/substitute.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/substr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sum.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/summary.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/svd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sweep.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/switch.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sys.parent.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/sys.source.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/system.file.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/system.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/system.time.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/system2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/t.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/table.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/tabulate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/tapply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/taskCallback.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/taskCallbackManager.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/taskCallbackNames.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/tempfile.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/textconnections.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/tilde.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/timezones.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/toString.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/trace.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/traceback.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/tracemem.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/transform.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/trimws.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/try.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/typeof.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/unique.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/units.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/unlink.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/unlist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/unname.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/use.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/userhooks.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/utf8Conversion.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/validUTF8.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/vector.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/warning.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/warnings.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/weekday.POSIXt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/which.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/which.min.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/with.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/withVisible.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/write.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/writeLines.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/xtfrm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/zMachine.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/zScript.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/zapsmall.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/zpackages.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/base/html/zutils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/EEF.profile.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/Imp.Estimates.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/abc.ci.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/acme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/aids.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/aircondit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/amis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/aml.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/beaver.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/bigcity.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/boot-practicals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/boot.array.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/boot.ci.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/boot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/brambles.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/breslow.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/calcium.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/cane.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/capability.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/catsM.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/cav.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/cd4.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/cd4.nested.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/censboot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/channing.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/claridge.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/cloth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/co.transfer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/coal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/control.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/corr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/cum3.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/cv.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/darwin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/dogs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/downs.bc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/ducks.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/empinf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/envelope.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/exp.tilt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/fir.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/freq.array.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/frets.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/glm.diag.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/glm.diag.plots.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/gravity.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/hirose.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/imp.weights.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/inv.logit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/islay.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/jack.after.boot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/k3.linear.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/linear.approx.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/lines.saddle.distn.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/logit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/manaus.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/melanoma.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/motor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/neuro.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/nitrofen.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/nodal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/norm.ci.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/nuclear.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/paulsen.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/plot.boot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/poisons.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/polar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/print.boot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/print.bootci.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/print.saddle.distn.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/print.simplex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/remission.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/saddle.distn.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/saddle.distn.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/saddle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/salinity.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/simplex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/simplex.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/smooth.f.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/sunspot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/survival.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/tau.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/tilt.boot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/tsboot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/tuna.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/urine.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/var.linear.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/boot/html/wool.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/SOM.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/batchSOM.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/condense.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/knn.cv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/knn.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/knn1.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/lvq1.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/lvq2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/lvq3.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/lvqinit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/lvqtest.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/multiedit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/olvq1.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/reduce.nn.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/class/html/somgrid.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/agnes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/agnes.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/agriculture.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/animals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/bannerplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/chorSub.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/clara.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/clara.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/clusGap.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/clusplot.default.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/clusplot.partition.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/cluster-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/coef.hclust.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/daisy.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/diana.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/dissimilarity.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/ellipsoidhull.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/fanny.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/fanny.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/flower.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/lower.to.upper.tri.inds.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/medoids.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/mona.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/mona.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/pam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/pam.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/partition.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/plantTraits.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/plot.agnes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/plot.diana.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/plot.mona.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/plot.partition.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/pltree.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/pluton.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/predict.ellipsoid.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/print.agnes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/print.clara.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/print.diana.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/print.dissimilarity.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/print.fanny.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/print.mona.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/print.pam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/ruspini.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/silhouette.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/sizeDiss.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/summary.agnes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/summary.clara.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/summary.diana.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/summary.mona.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/summary.pam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/twins.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/volume.ellipsoid.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/votes.repub.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/cluster/html/xclara.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/codetools/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/codetools/html/checkUsage.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/codetools/html/codetools.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/codetools/html/findGlobals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/codetools/html/showTree.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/compiler/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/compiler/html/compile.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/AirPassengers.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/BJsales.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/BOD.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/ChickWeight.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/DNase.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/EuStockMarkets.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/Formaldehyde.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/HairEyeColor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/Harman23.cor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/Harman74.cor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/Indometh.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/InsectSprays.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/JohnsonJohnson.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/LakeHuron.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/LifeCycleSavings.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/Loblolly.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/Nile.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/Orange.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/OrchardSprays.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/PlantGrowth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/Puromycin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/Theoph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/Titanic.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/ToothGrowth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/UCBAdmissions.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/UKDriverDeaths.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/UKLungDeaths.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/UKgas.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/USAccDeaths.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/USArrests.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/USJudgeRatings.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/USPersonalExpenditure.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/VADeaths.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/WWWusage.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/WorldPhones.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/ability.cov.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/airmiles.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/airquality.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/anscombe.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/attenu.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/attitude.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/austres.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/beavers.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/cars.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/chickwts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/co2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/crimtab.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/datasets-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/discoveries.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/esoph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/euro.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/eurodist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/faithful.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/freeny.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/infert.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/iris.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/islands.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/lh.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/longley.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/lynx.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/morley.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/mtcars.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/nhtemp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/nottem.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/npk.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/occupationalStatus.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/precip.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/presidents.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/pressure.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/quakes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/randu.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/rivers.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/rock.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/sleep.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/stackloss.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/state.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/sunspot.month.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/sunspot.year.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/sunspots.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/swiss.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/treering.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/trees.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/uspop.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/volcano.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/warpbreaks.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/women.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/datasets/html/zCO2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/lookup.xport.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.S.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.arff.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.dbf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.dta.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.epiinfo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.mtp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.octave.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.spss.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.ssd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.systat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/read.xport.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/write.arff.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/write.dbf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/write.dta.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/foreign/html/write.foreign.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/Devices.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/Hershey.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/Japanese.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/Type1Font.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/adjustcolor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/as.graphicsAnnot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/as.raster.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/axisTicks.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/boxplot.stats.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/bringToTop.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/cairo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/cairoSymbolFont.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/check.options.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/chull.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/cm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/col2rgb.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/colorRamp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/colors.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/contourLines.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/convertColor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/densCols.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/dev.capabilities.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/dev.capture.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/dev.flush.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/dev.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/dev.interactive.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/dev.size.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/dev2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/dev2bitmap.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/devAskNewPage.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/embedFonts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/extendrange.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/getGraphicsEvent.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/glyphInfo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/grDevices-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/grDevices-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/grSoftVersion.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/gray.colors.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/gray.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/hcl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/hsv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/make.rgb.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/msgWindow.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/n2mfrow.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/nclass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/palette.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/palettes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/pdf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/pdf.options.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/pictex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/plotmath.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/png.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/postscript.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/postscriptFonts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/pretty.Date.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/ps.options.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/quartz.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/quartzFonts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/recordGraphics.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/recordplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/rgb.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/rgb2hsv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/savePlot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/trans3d.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/windows.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/windows.options.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/windowsFonts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/x11.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/x11Fonts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/xfig.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/xy.coords.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/xyTable.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grDevices/html/xyz.coords.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/abline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/arrows.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/assocplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/axTicks.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/axis.POSIXct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/axis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/barplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/box.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/boxplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/boxplot.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/bxp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/cdplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/clip.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/contour.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/convertXY.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/coplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/curve.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/dotchart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/filled.contour.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/fourfoldplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/graphics-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/graphics-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/grid.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/hist.POSIXt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/hist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/identify.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/image.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/layout.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/legend.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/lines.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/locator.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/matplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/mosaicplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/mtext.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/pairs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/panel.smooth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/par.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/persp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/pie.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/plot.dataframe.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/plot.default.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/plot.design.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/plot.factor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/plot.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/plot.raster.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/plot.table.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/plot.window.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/plot.xy.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/plothistogram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/points.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/polygon.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/polypath.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/rasterImage.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/rect.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/rug.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/screen.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/segments.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/smoothScatter.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/spineplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/stars.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/stem.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/stripchart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/strwidth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/sunflowerplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/symbols.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/text.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/title.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/units.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/xspline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/graphics/html/zAxis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/Grid.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/absolute.size.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/arrow.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/as.mask.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/calcStringMetric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/current.viewport.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/dataViewport.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/depth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/deviceLoc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/drawDetails.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/editDetails.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/editViewport.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/explode.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/gEdit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/gPath.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/getNames.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/gpar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.DLapply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.add.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.bezier.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.cap.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.circle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.clip.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.convert.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.copy.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.curve.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.delay.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.display.list.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.draw.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.edit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.force.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.function.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.get.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.glyph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.grab.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.grep.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.grill.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.grob.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.group.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.layout.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.lines.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.locator.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.ls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.move.to.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.newpage.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.null.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.pack.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.path.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.place.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.plot.and.legend.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.points.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.polygon.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.pretty.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.raster.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.record.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.rect.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.refresh.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.remove.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.reorder.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.roundrect.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.segments.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.set.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.show.layout.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.show.viewport.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.stroke.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.text.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.xaxis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.xspline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grid.yaxis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/gridCoords.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grobCoords.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grobName.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grobWidth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/grobX.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/legendGrob.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/makeContent.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/patterns.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/plotViewport.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/resolveRasterSize.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/showGrob.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/showViewport.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/stringWidth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/unit.c.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/unit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/unit.length.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/unit.pmin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/unit.rep.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/unitType.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/valid.just.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/validDetails.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/viewport.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/viewportTransform.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/viewports.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/vpPath.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/widthDetails.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/xDetails.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/grid/html/xsplinePoints.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/Lattice.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/Rows.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/USMortality.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/axis.default.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/banking.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/barchart.table.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/barley.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/cloud.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/draw.colorkey.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/draw.key.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/environmental.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/ethanol.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/histogram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/interaction.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/lattice.options.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/latticeParseFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/level.colors.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/levelplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/llines.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/lset.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/make.groups.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/melanoma.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/oneway.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/packet.panel.default.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.axis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.barchart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.bwplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.cloud.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.densityplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.dotplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.functions.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.histogram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.levelplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.loess.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.number.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.pairs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.parallel.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.qqmath.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.qqmathline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.smoothScatter.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.spline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.stripplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.superpose.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.violin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/panel.xyplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/prepanel.default.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/prepanel.functions.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/print.trellis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/qq.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/qqmath.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/rfs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/shingles.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/simpleKey.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/simpleTheme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/singer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/splom.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/standard.theme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/strip.default.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/tmd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/trellis.device.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/trellis.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/trellis.par.get.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/update.trellis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/utilities.3d.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/xyplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/lattice/html/xyplot.ts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/BasicClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/Classes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/Classes_Details.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/Documentation.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/EmptyMethodsList-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/EnvironmentClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/GenericFunctions.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/Introduction.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/LanguageClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/LinearMethodsList-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/MethodDefinition-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/MethodSupport.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/MethodWithNext-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/Methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/MethodsList-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/MethodsList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/Methods_Details.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/Methods_for_Nongenerics.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/Methods_for_S3.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/NextMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/ObjectsWithPackage-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/RClassUtils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/RMethodUtils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/S3Part.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/S4groupGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/SClassExtension-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/StructureClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/TraceClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/as.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/callGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/canCoerce.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/cbind2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/className.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/classRepresentation-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/classesToAM.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/dotsMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/evalSource.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/findClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/findMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/fixPrevious.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/genericFunction-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/getClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/getMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/getPackageName.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/hasArg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/implicitGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/inheritedSlotNames.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/initialize-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/is.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/isSealedMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/languageEl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/localRefClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/method.skeleton.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/methodUtilities.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/methods-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/methods-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/methods-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/new.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/nonStructure-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/promptClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/promptMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/refClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/removeMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/representation.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/selectSuperClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/setAs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/setClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/setClassUnion.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/setGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/setGroupGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/setIs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/setLoadActions.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/setMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/setOldClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/setSClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/show.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/showMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/signature-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/slot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/stdRefClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/substituteDirect.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/testInheritedMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/validObject.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/methods/html/zBasicFunsList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/Beta.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/FFdes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/NCV.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/Predict.matrix.cr.smooth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/Predict.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/Predict.matrix.soap.film.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/Rrank.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/Sl.initial.repara.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/Sl.repara.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/Sl.setup.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/Tweedie.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/XWXd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/anova.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/bam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/bam.update.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/bandchol.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/blas.thread.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/bug.reports.mgcv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/cSplineDes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/chol.down.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/choose.k.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/cnorm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/columb.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/concurvity.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/coxpht.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/dDeta.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/dpnorm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/exclude.too.far.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/extract.lme.cov.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/factor.smooth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/family.mgcv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/fix.family.link.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/fixDependence.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/formXtViX.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/formula.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/fs.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/full.score.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.check.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.control.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.convergence.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.fit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.fit3.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.fit5.post.proc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.mh.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.models.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.outer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.reparam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.scale.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.selection.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.side.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam.vcomp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gam2objective.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gamObject.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gamSim.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gamlss.etamu.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gamlss.gH.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gamm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gammals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gaulss.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/get.var.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gevlss.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gfam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/ginla.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/gumbls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/identifiability.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/in.out.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/inSide.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/influence.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/initial.sp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/interpret.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/jagam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/k.check.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/ldTweedie.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/ldetS.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/linear.functional.terms.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/logLik.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/ls.size.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/magic.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/magic.post.proc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/mgcv-FAQ.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/mgcv-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/mgcv-parallel.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/mini.roots.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/missing.data.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/model.matrix.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/mono.con.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/mroot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/multinom.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/mvn.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/negbin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/new.name.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/notExp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/notExp2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/null.space.dimension.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/ocat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/one.se.rule.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/pcls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/pdIdnot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/pdTens.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/pen.edf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/place.knots.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/plot.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/polys.plot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/predict.bam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/predict.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/print.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/psum.chisq.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/qq.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/rTweedie.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/random.effects.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/residuals.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/rig.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/rmvn.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/s.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/scat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/sdiag.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/shash.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/single.index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/slanczos.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.ad.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.bs.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.cr.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.ds.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.fs.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.gp.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.mrf.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.ps.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.re.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.so.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.sos.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.sz.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.t2.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.tensor.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.construct.tp.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.info.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth.terms.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smooth2random.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/smoothCon.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/sp.vcov.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/spasm.construct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/step.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/summary.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/t2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/te.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/tensor.prod.model.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/totalPenaltySpace.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/trichol.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/trind.generator.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/twlss.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/uniquecombs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/vcov.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/vis.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/ziP.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/html/ziplss.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/ACF.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/ACF.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/ACF.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Alfalfa.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Assay.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/BodyWeight.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Cefamandole.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Coef.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Covariate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Covariate.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Dialyzer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Dim.corSpatial.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Dim.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Dim.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Dim.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Earthquake.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Extract.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Fatigue.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Gasoline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Glucose.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Glucose2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Gun.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/IGF.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Initialize.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Initialize.glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Initialize.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Initialize.lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Initialize.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Initialize.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/LDEsysMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Machines.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/MathAchSchool.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/MathAchieve.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Matrix.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Matrix.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Meat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Milk.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Muscle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Names.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Names.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Names.pdBlocked.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Names.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Names.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Nitrendipene.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Oats.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Orthodont.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Ovary.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Oxboys.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Oxide.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/PBG.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Phenobarb.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Pixel.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Quinidine.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Rail.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/RatPupWeight.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Relaxin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Remifentanil.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Soybean.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Spruce.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Tetracycline1.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Tetracycline2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/VarCorr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Variogram.corExp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Variogram.corGaus.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Variogram.corLin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Variogram.corRatio.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Variogram.corSpatial.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Variogram.corSpher.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Variogram.default.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Variogram.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Variogram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Variogram.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Wafer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Wheat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/Wheat2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/allCoef.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/anova.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/anova.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/as.matrix.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/as.matrix.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/as.matrix.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/asOneFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/asTable.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/augPred.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/balancedGrouped.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/bdf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/coef.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/coef.gnls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/coef.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/coef.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/coef.modelStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/coef.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/coef.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/coef.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/collapse.groupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/collapse.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/compareFits.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/comparePred.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corAR1.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corARMA.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corCAR1.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corCompSymm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corExp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corFactor.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corFactor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corGaus.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corLin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corMatrix.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corMatrix.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corMatrix.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corNatural.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corRatio.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corSpatial.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corSpher.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/corSymm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/ergoStool.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/fdHess.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/fitted.glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/fitted.gnlsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/fitted.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/fitted.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/fitted.lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/fitted.nlmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/fixed.effects.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/fixef.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/formula.pdBlocked.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/formula.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/formula.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/gapply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getCovariate.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getCovariate.data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getCovariate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getCovariate.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getCovariateFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getData.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getData.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getData.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getGroups.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getGroups.data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getGroups.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getGroups.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getGroups.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getGroups.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getGroups.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getGroupsFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getResponse.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getResponseFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/getVarCov.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/gls-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/glsControl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/glsObject.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/gnls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/gnlsControl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/gnlsObject.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/gnlsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/groupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/gsummary.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/intervals.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/intervals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/intervals.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/intervals.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/isBalanced.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/isInitialized.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/lmList.groupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/lme.groupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/lme.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/lmeControl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/lmeObject.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logDet.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logDet.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logDet.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logDet.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logLik.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logLik.glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logLik.gnls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logLik.gnlsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logLik.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logLik.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logLik.lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logLik.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/logLik.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/model.matrix.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/needUpdate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/needUpdate.modelStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/nlme-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/nlme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/nlme.nlsList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/nlmeControl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/nlmeObject.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/nlmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/nlsList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/nlsList.selfStart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pairs.compareFits.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pairs.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pairs.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdBlocked.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdCompSymm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdConstruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdConstruct.pdBlocked.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdDiag.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdFactor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdFactor.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdIdent.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdLogChol.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdMatrix.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdNatural.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pdSymm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/phenoModel.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.ACF.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.Variogram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.augPred.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.compareFits.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.intervals.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.nffGroupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.nfnGroupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.nmGroupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.ranef.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/plot.ranef.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/pooledSD.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/predict.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/predict.gnls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/predict.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/predict.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/predict.nlme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/print.summary.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/print.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/qqnorm.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/qqnorm.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/quinModel.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/random.effects.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/ranef.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/ranef.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/recalc.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/recalc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/recalc.modelStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/recalc.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/recalc.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/residuals.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/residuals.glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/residuals.gnlsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/residuals.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/residuals.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/residuals.lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/residuals.nlmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/simulate.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/solve.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/solve.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/splitFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/summary.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/summary.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/summary.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/summary.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/summary.modelStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/summary.nlsList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/summary.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/summary.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/update.modelStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/update.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varComb.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varConstPower.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varConstProp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varExp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varFixed.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varIdent.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varPower.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varWeights.glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varWeights.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nlme/html/varWeights.lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nnet/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nnet/html/class.ind.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nnet/html/multinom.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nnet/html/nnet.Hess.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nnet/html/nnet.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nnet/html/predict.nnet.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/nnet/html/which.is.max.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/RngStream.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/children.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/clusterApply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/detectCores.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/makeCluster.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/mcaffinity.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/mcfork.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/mclapply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/mcparallel.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/parallel-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/pvec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/parallel/html/splitIndices.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/car.test.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/car90.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/cu.summary.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/kyphosis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/labels.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/meanvar.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/na.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/path.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/plot.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/plotcp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/post.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/predict.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/print.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/printcp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/prune.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/residuals.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/rpart-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/rpart.control.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/rpart.exp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/rpart.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/rsq.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/snip.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/solder.balance.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/stagec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/summary.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/text.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/rpart/html/xpred.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/Kaver.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/Kenvl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/Kfn.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/Psim.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/SSI.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/Strauss.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/anova.trls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/correlogram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/expcov.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/ppgetregion.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/ppinit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/pplik.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/ppregion.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/predict.trls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/prmat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/semat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/surf.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/surf.ls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/trls.influence.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/trmat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/spatial/html/variogram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/asVector.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/backSpline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/bs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/interpSpline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/ns.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/periodicSpline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/polySpline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/predict.bSpline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/predict.bs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/splineDesign.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/splineKnots.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/splineOrder.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/splines-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/splines/html/xyVector.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/AIC.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ARMAacf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ARMAtoMA.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Beta.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Binomial.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Cauchy.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Chisquare.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Distributions.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Exponential.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Fdist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/GammaDist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Geometric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/HoltWinters.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Hypergeometric.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/IQR.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/KalmanLike.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Logistic.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Lognormal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Multinom.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/NLSstAsymptotic.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/NLSstClosestX.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/NLSstLfAsymptote.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/NLSstRtAsymptote.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/NegBinomial.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Normal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Pair.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Poisson.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSD.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSasymp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSasympOff.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSasympOrig.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSbiexp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSfol.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSfpl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSgompertz.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSlogis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSmicmen.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SSweibull.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/SignRank.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Smirnov.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/StructTS.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/TDist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Tukey.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/TukeyHSD.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Uniform.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Weibull.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/Wilcoxon.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/acf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/acf2AR.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/add1.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/addmargins.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/aggregate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/alias.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/anova.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/anova.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/anova.lm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/anova.mlm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ansari.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/aov.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/approxfun.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ar.ols.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/arima.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/arima.sim.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/arima0.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/as.hclust.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/asOneSidedFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ave.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/bandwidth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/bartlett.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/binom.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/biplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/biplot.princomp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/birthday.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/box.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/cancor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/case.names.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/checkMFClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/chisq.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/cmdscale.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/coef.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/complete.cases.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/confint.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/constrOptim.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/contrast.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/contrasts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/convolve.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/cophenetic.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/cor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/cor.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/cov.wt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/cpgram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/cutree.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/decompose.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/delete.response.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/dendrapply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/dendrogram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/density.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/deriv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/deviance.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/df.residual.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/diffinv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/dist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/dummy.coef.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ecdf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/eff.aovlist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/effects.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/embed.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/expand.model.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/extractAIC.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/factanal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/factor.scope.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/family.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/fft.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/filter.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/fisher.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/fitted.values.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/fivenum.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/fligner.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/formula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/formula.nls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/friedman.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ftable.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ftable.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/getInitial.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/glm.control.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/glm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/glm.summaries.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/hclust.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/heatmap.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/identify.hclust.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/influence.measures.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/integrate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/interaction.plot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/is.empty.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/isoreg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/kernapply.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/kernel.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/kmeans.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/kruskal.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ks.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ksmooth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/lag.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/lag.plot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/line.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/listof.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/lm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/lm.influence.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/lm.summaries.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/lmfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/loadings.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/loess.control.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/loess.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/logLik.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/loglin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/lowess.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ls.diag.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ls.print.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/lsfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/mad.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/mahalanobis.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/make.link.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/makepredictcall.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/manova.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/mantelhaen.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/mauchly.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/mcnemar.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/median.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/medpolish.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/model.extract.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/model.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/model.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/model.tables.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/monthplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/mood.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/na.action.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/na.contiguous.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/na.fail.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/nafns.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/naprint.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/nextn.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/nlm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/nlminb.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/nls.control.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/nls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/nobs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/numericDeriv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/offset.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/oneway.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/optim.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/optimize.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/order.dendrogram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/p.adjust.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/pairwise.prop.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/pairwise.t.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/pairwise.table.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/pairwise.wilcox.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.HoltWinters.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.acf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.density.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.isoreg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.lm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.ppr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.profile.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.profile.nls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.stepfun.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/plot.ts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/poisson.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/poly.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/power.anova.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/power.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/power.prop.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/power.t.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/pp.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ppoints.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ppr.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/prcomp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/predict.HoltWinters.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/predict.arima.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/predict.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/predict.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/predict.lm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/predict.loess.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/predict.nls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/predict.smooth.spline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/preplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/princomp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/print.power.htest.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/print.ts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/printCoefmat.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/profile.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/profile.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/profile.nls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/proj.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/prop.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/prop.trend.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/qqnorm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/quade.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/quantile.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/r2dtable.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/rWishart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/read.ftable.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/rect.hclust.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/relevel.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/reorder.dendrogram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/reorder.factor.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/replications.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/reshape.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/residuals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/runmed.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/scatter.smooth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/screeplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/sd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/se.contrast.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/selfStart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/setNames.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/shapiro.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/sigma.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/simulate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/smooth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/smooth.spline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/smoothEnds.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/sortedXyData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/spec.ar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/spec.pgram.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/spec.taper.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/spectrum.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/splinefun.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/start.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/stat.anova.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/stats-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/stats-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/stats-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/step.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/stepfun.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/stl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/stlmethods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/summary.aov.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/summary.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/summary.lm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/summary.manova.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/summary.nls.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/summary.princomp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/supsmu.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/symnum.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/t.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/termplot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/terms.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/terms.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/terms.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/time.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/toeplitz.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ts-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ts.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ts.plot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/ts.union.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/tsSmooth.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/tsdiag.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/tsp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/uniroot.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/update.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/update.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/var.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/varimax.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/vcov.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/weighted.mean.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/weighted.residuals.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/weights.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/wilcox.test.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/window.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/xtabs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats/html/zC.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/coef-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/confint-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/logLik-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/mle-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/mle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/plot-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/profile-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/profile.mle-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/show-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/stats4-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/summary-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/summary.mle-class.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/update-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/stats4/html/vcov-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/Surv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/Surv2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/Surv2data.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/Survmethods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/aareg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/aeqSurv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/aggregate.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/agreg.fit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/aml.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/anova.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/attrassign.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/basehaz.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/bladder.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/blogit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/brier.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/cch.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/cgd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/cgd0.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/cipoisson.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/clogit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/cluster.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/colon.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/concordance.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/concordancefit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/cox.zph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/coxph.control.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/coxph.detail.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/coxph.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/coxph.wtest.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/coxphms.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/coxsurv.fit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/diabetic.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/dsurvreg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/finegray.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/flchain.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/frailty.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/gbsg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/heart.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/hoel.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/is.ratetable.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/kidney.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/levels.Surv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/lines.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/logLik.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/logan.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/lung.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/mgus.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/mgus2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/model.frame.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/model.matrix.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/myeloid.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/myeloma.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/nafld.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/neardate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/nsk.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/nwtco.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/ovarian.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/pbc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/pbcseq.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/plot.aareg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/plot.cox.zph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/plot.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/predict.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/predict.survreg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/print.aareg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/print.summary.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/print.summary.survexp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/print.summary.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/print.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/pseudo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/pspline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/pyears.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/quantile.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/ratetable.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/ratetableDate.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/rats.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/rats2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/reliability.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/residuals.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/residuals.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/residuals.survreg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/retinopathy.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/rhDNase.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/ridge.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/rotterdam.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/royston.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/rttright.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/solder.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/stanford2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/statefig.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/strata.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/summary.aareg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/summary.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/summary.pyears.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/summary.survexp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/summary.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survSplit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survcheck.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survcondense.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survdiff.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survexp.fit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survexp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survexp.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survexp.us.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survfit.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survfit.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survfit.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survfit.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survfit0.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survfitcoxph.fit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survival-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survival-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survobrien.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survreg.control.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survreg.distributions.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survreg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survreg.object.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/survregDtest.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/tcut.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/timeline.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/tmerge.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/tobin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/transplant.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/udca.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/untangle.specials.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/uspop2.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/vcov.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/veteran.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/xtfrm.Surv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/yates.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/survival/html/yates_setup.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/TclInterface.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/TkCommands.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/TkWidgetcmds.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/TkWidgets.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/tclServiceMode.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/tcltk-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/tcltk-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/tkProgressBar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/tkStartGUI.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/tk_choose.dir.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/tk_choose.files.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/tk_messageBox.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/tk_select.list.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tcltk/html/tkpager.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/CRANtools.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/HTMLheader.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/HTMLlinks.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/QC.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/Rcmd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/Rd2HTML.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/Rd2txt_options.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/RdTextFilter.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/Rdiff.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/Rdindex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/Rdutils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/SweaveTeXFilter.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/add_datalist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/assertCondition.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/bibstyle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/buildVignette.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/buildVignettes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/charsets.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/checkFF.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/checkMD5sums.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/checkPoFiles.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/checkRd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/checkRdaFiles.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/checkTnF.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/checkVignettes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/check_packages_in_dir.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/codoc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/compactPDF.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/delimMatch.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/dependsOnPkgs.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/encoded.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/fileutils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/find_gs_cmd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/getVignetteInfo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/loadRdMacros.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/makeLazyLoading.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/make_translations_pkg.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/makevars.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/matchConcordance.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/md5sum.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/package_dependencies.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/package_native_routine_registration_skeleton.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/parseLatex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/parse_Rd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/pkg2HTML.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/print.via.format.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/pskill.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/psnice.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/read.00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/showNonASCII.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/startDynamicHelp.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/testInstalledPackage.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/texi2dvi.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/toHTML.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/toRd.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/toTitleCase.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/tools-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/tools-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/tools-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/undoc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/updatePACKAGES.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/update_pkg_po.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/userdir.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/vignetteEngine.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/vignetteInfo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/writePACKAGES.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/tools/html/xgettext.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/BATCH.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/COMPILE.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/DLL.version.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/INSTALL.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/LINK.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/PkgUtils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/Question.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/REMOVE.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/RHOME.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/RShowDoc.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/RSiteSearch.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/Rconsole.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/Rprof.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/Rprofmem.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/Rscript.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/Rtangle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/RweaveLatex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/SHLIB.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/Sweave.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/SweaveSyntConv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/SweaveUtils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/URLencode.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/View.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/adist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/alarm.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/apropos.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/aregexec.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/arrangeWindows.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/askYesNo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/aspell-utils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/aspell.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/available.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/bibentry.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/browseEnv.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/browseURL.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/browseVignettes.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/bug.report.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/capture.output.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/changedFiles.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/charClass.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/choose.dir.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/choose.files.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/chooseBioCmirror.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/chooseCRANmirror.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/citEntry.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/citation.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/cite.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/clipboard.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/close.socket.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/combn.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/compareVersion.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/contrib.url.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/count.fields.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/create.post.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/data.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/dataentry.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/debugcall.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/debugger.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/demo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/download.file.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/download.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/edit.data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/edit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/example.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/file.edit.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/filetest.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/findCRANmirror.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/findLineNum.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/fix.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/flush.console.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/format.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/getAnywhere.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/getFromNamespace.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/getParseData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/getS3method.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/getWindowsHandle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/getWindowsHandles.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/glob2rx.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/globalVariables.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/hasName.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/hashtab.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/head.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/help.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/help.request.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/help.search.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/help.start.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/hsearch-utils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/install.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/installed.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/isS3method.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/isS3stdGen.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/localeToCharset.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/ls_str.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/maintainer.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/make.packages.html.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/make.socket.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/memory.size.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/menu.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/methods.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/mirrorAdmin.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/modifyList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/news.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/nsl.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/object.size.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/package.skeleton.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/packageDescription.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/packageName.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/packageStatus.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/page.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/person.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/personList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/process.events.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/prompt.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/promptData.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/promptPackage.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/rcompgen.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/read.DIF.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/read.fortran.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/read.fwf.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/read.socket.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/read.table.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/readRegistry.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/recover.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/relist.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/remove.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/removeSource.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/roman.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/rtags.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/savehistory.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/select.list.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/sessionInfo.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/setRepositories.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/setWindowTitle.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/shortPathName.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/sourceutils.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/stack.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/str.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/strcapture.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/summaryRprof.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/tar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/toLatex.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/txtProgressBar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/type.convert.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/untar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/unzip.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/update.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/upgrade.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/url.show.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/utils-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/utils-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/utils-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/utils-package.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/vignette.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/warnErrList.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/winDialog.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/winMenus.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/winProgressBar.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/winextras.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/write.table.html
+ for i in /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/utils/html/zip.html
+ chmod +x /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/R/sh/echo.sh
+ chmod +x /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/BATCH /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/COMPILE /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/INSTALL /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/LINK /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/R /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/REMOVE /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/Rcmd /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/Rd2pdf /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/Rdconv /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/Rdiff /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/Rprof /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/Rscript /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/SHLIB /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/Stangle /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/Sweave /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/build /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/check /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/config /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/exec /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/javareconf /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/libtool /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/mkinstalldirs /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/pager /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/rtags
+ chmod -x /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/library/mgcv/CITATION /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/doc/R/CAPABILITIES
+ '[' '!' -d /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/include ']'
~/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R ~/build/BUILD/R-4.4.3
+ pushd /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R
+ ln -s ../../include/R include
+ popd
~/build/BUILD/R-4.4.3
+ for i in tex/latex bibtex/bib bibtex/bst
+ mkdir -p /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/texlive/texmf-dist/tex/latex
+ cd /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/texlive/texmf-dist/tex/latex
+ ln -s /usr/share/R/texmf/tex/latex R
+ for i in tex/latex bibtex/bib bibtex/bst
+ mkdir -p /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/texlive/texmf-dist/bibtex/bib
+ cd /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/texlive/texmf-dist/bibtex/bib
+ ln -s /usr/share/R/texmf/bibtex/bib R
+ for i in tex/latex bibtex/bib bibtex/bst
+ mkdir -p /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/texlive/texmf-dist/bibtex/bst
+ cd /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/texlive/texmf-dist/bibtex/bst
+ ln -s /usr/share/R/texmf/bibtex/bst R
+ /usr/bin/find-debuginfo -j64 --strict-build-id -m -i --build-id-seed 4.4.3-1.el10_0 --unique-debug-suffix -4.4.3-1.el10_0.aarch64 --unique-debug-src-base R-4.4.3-1.el10_0.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/R-4.4.3
find-debuginfo: starting
Extracting debug info from 33 files
DWARF-compressing 33 files
sepdebugcrcfix: Updated 33 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/R-4.4.3-1.el10_0.aarch64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs --files /usr/lib64/R/bin/
mangling shebang in /usr/bin/R from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/share/R/sh/echo.sh from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j64
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.purgcV
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection   -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd R-4.4.3
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: R-4.4.3-1.el10_0.aarch64
Processing files: R-core-4.4.3-1.el10_0.aarch64
warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/bin/Rscript and /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/Rscript
warning: absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bib/R -> /usr/share/R/texmf/bibtex/bib
warning: absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bst/R -> /usr/share/R/texmf/bibtex/bst
warning: absolute symlink: /usr/share/texlive/texmf-dist/tex/latex/R -> /usr/share/R/texmf/tex/latex
Provides: R(ABI) = 4.4 R(KernSmooth) = 2.23.26 R(MASS) = 7.3.64 R(Matrix) = 1.7.2 R(base) = 4.4.3 R(boot) = 1.3.31 R(class) = 7.3.23 R(cluster) = 2.1.8 R(codetools) = 0.2.20 R(compiler) = 4.4.3 R(datasets) = 4.4.3 R(foreign) = 0.8.88 R(grDevices) = 4.4.3 R(graphics) = 4.4.3 R(grid) = 4.4.3 R(lattice) = 0.22.6 R(methods) = 4.4.3 R(mgcv) = 1.9.1 R(nlme) = 3.1.167 R(nnet) = 7.3.20 R(parallel) = 4.4.3 R(rpart) = 4.1.24 R(spatial) = 7.3.18 R(splines) = 4.4.3 R(stats) = 4.4.3 R(stats4) = 4.4.3 R(survival) = 3.8.3 R(tcltk) = 4.4.3 R(tools) = 4.4.3 R(translations) = 4.4.3 R(utils) = 4.4.3 R-KernSmooth = 2.23.26 R-MASS = 7.3.64 R-Matrix = 1.7.2 R-base = 4.4.3 R-boot = 1.3.31 R-class = 7.3.23 R-cluster = 2.1.8 R-codetools = 0.2.20 R-compiler = 4.4.3 R-core = 4.4.3-1.el10_0 R-core(aarch-64) = 4.4.3-1.el10_0 R-datasets = 4.4.3 R-foreign = 0.8.88 R-grDevices = 4.4.3 R-graphics = 4.4.3 R-grid = 4.4.3 R-lattice = 0.22.6 R-methods = 4.4.3 R-mgcv = 1.9.1 R-nlme = 3.1.167 R-nnet = 7.3.20 R-parallel = 4.4.3 R-rpart = 4.1.24 R-spatial = 7.3.18 R-splines = 4.4.3 R-stats = 4.4.3 R-stats4 = 4.4.3 R-survival = 3.8.3 R-tcltk = 4.4.3 R-tools = 4.4.3 R-translations = 4.4.3 R-utils = 4.4.3 config(R-core) = 4.4.3-1.el10_0 libR.so()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /bin/sh /usr/bin/sh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libX11.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libdeflate.so.0()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgobject-2.0.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libicui18n.so.74()(64bit) libicuuc.so.74()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libm.so.6(GLIBC_2.38)(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre2-8.so.0()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libreadline.so.8()(64bit) libtcl8.6.so()(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libtirpc.so.3()(64bit) libtirpc.so.3(TIRPC_0.3.0)(64bit) libtk8.6.so()(64bit) libtre.so.5()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Obsoletes: R-Matrix < 0.999375-7
Processing files: R-core-devel-4.4.3-1.el10_0.aarch64
Provides: R-Matrix-devel = 1.7.2 R-core-devel = 4.4.3-1.el10_0 R-core-devel(aarch-64) = 4.4.3-1.el10_0 pkgconfig(libR) = 4.4.3
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config
Obsoletes: R-Matrix-devel < 0.999375-7
Recommends: devscripts-checkbashisms tex(latex) texinfo-tex tidy
Processing files: R-devel-4.4.3-1.el10_0.aarch64
Processing files: R-java-4.4.3-1.el10_0.aarch64
Processing files: R-java-devel-4.4.3-1.el10_0.aarch64
Processing files: libRmath-4.4.3-1.el10_0.aarch64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.wEwety
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-4.4.3
+ LICENSEDIR=/builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/licenses/libRmath
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/licenses/libRmath
+ cp -pr /builddir/build/BUILD/R-4.4.3/doc/COPYING /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/share/licenses/libRmath
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libRmath = 4.4.3-1.el10_0 libRmath(aarch-64) = 4.4.3-1.el10_0 libRmath.so()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) rtld(GNU_HASH)
Processing files: libRmath-devel-4.4.3-1.el10_0.aarch64
Provides: libRmath-devel = 4.4.3-1.el10_0 libRmath-devel(aarch-64) = 4.4.3-1.el10_0 pkgconfig(libRmath) = 4.4.3
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config
Processing files: libRmath-static-4.4.3-1.el10_0.aarch64
Provides: libRmath-static = 4.4.3-1.el10_0 libRmath-static(aarch-64) = 4.4.3-1.el10_0
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-debugsource-4.4.3-1.el10_0.aarch64
Provides: R-debugsource = 4.4.3-1.el10_0 R-debugsource(aarch-64) = 4.4.3-1.el10_0
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-debuginfo-4.4.3-1.el10_0.aarch64
Provides: R-debuginfo = 4.4.3-1.el10_0 R-debuginfo(aarch-64) = 4.4.3-1.el10_0
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-debugsource(aarch-64) = 4.4.3-1.el10_0
Processing files: R-core-debuginfo-4.4.3-1.el10_0.aarch64
warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib/debug/usr/bin/Rscript-4.4.3-1.el10_0.aarch64.debug and /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib/debug/usr/lib64/R/bin/Rscript-4.4.3-1.el10_0.aarch64.debug
Provides: R-core-debuginfo = 4.4.3-1.el10_0 R-core-debuginfo(aarch-64) = 4.4.3-1.el10_0 debuginfo(build-id) = 017c7b793155931c9420bc07e4bae22641a2badb debuginfo(build-id) = 09a8401c0ab28241eecfbc9924ebe0b7fe847aee debuginfo(build-id) = 0e1f1c9ef0bc76d62c4a37d5fdebb0b0f252a0af debuginfo(build-id) = 1856cee312548e4ebfd33d60cbebfba75b0f9558 debuginfo(build-id) = 3b6d5a38b901a5c83eaf3f724ab2f05e8aa95adf debuginfo(build-id) = 3f20d46cf905cb3c213add31907d33a95f620a51 debuginfo(build-id) = 4099a4658aea8464cb52dace4338c232a25fe6e9 debuginfo(build-id) = 4bd8a40a73a474b37835396ae21055b83f43d8ec debuginfo(build-id) = 53b68158f435b03491b306571d1f59a835be5484 debuginfo(build-id) = 5c0d928d3feb419cb77c38f8d191b36b971e2cc4 debuginfo(build-id) = 601292924e4ccb5dce96d4407da8671ec27ebe89 debuginfo(build-id) = 613ea51f3de480111344282c5a9002e8a3d4e1a3 debuginfo(build-id) = 712fddf435faa267de1b3d23869461adec5136cd debuginfo(build-id) = 749b8f537853f9e93ef3532c0665ffe39b3a8880 debuginfo(build-id) = 89c5e3e9fc8852d596419c41d8b2fbe7a81fd932 debuginfo(build-id) = 93ef9e512c3543fbacb8bfbb14a427f894e93352 debuginfo(build-id) = 9726d6a5bc37cabfa7d9b81f4e52e8051c677776 debuginfo(build-id) = a1e4c58218c7312f02e097c068ba24bb20e73098 debuginfo(build-id) = af40182166e8f74f26b8a9ff47dc5aac17713f75 debuginfo(build-id) = c1c234beab458019f4b7c508064f7736e59ff73f debuginfo(build-id) = c7351b1b26874109ec9e4f89920a4beabd4f72f6 debuginfo(build-id) = ca05568e07a9a85a1b621219e0c84f153d6a85a9 debuginfo(build-id) = d2cc4d371c485f715aa54160c130f4d904032247 debuginfo(build-id) = d9678c91d090b7bf4fe7713317f56163080bbbb5 debuginfo(build-id) = daad6facc834ee436512284274d2fd5632c0afe4 debuginfo(build-id) = dbd66e4358d3bffc1e92075172c3d9c6556c904e debuginfo(build-id) = e3a034d898812ad71949cf81f6c4b00021cc53b1 debuginfo(build-id) = e7caaddfec744ae5594da99bcd98843372d7ad0b debuginfo(build-id) = f08b14e1621372b11899669177d18ba64cc5da08 debuginfo(build-id) = fb2eeaec299e1ed6c676ef2994fcf19e4de60724 debuginfo(build-id) = fd46b8519c11c99203f911cf2ee1f57344fbdcb9 debuginfo(build-id) = nilnil libR.so-4.4.3-1.el10_0.aarch64.debug()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-debugsource(aarch-64) = 4.4.3-1.el10_0
Processing files: libRmath-debuginfo-4.4.3-1.el10_0.aarch64
Provides: debuginfo(build-id) = b0f517223f779b64293d41d93605f5d8396f61f6 libRmath-debuginfo = 4.4.3-1.el10_0 libRmath-debuginfo(aarch-64) = 4.4.3-1.el10_0 libRmath.so-4.4.3-1.el10_0.aarch64.debug()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-debugsource(aarch-64) = 4.4.3-1.el10_0
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64
Wrote: /builddir/build/RPMS/R-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/R-java-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/R-devel-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/R-java-devel-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/libRmath-devel-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/R-debuginfo-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/libRmath-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/R-core-devel-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/libRmath-debuginfo-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/libRmath-static-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/R-debugsource-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/R-core-debuginfo-4.4.3-1.el10_0.aarch64.rpm
Wrote: /builddir/build/RPMS/R-core-4.4.3-1.el10_0.aarch64.rpm
RPM build warnings:
    Duplicate build-ids /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/bin/Rscript and /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib64/R/bin/Rscript
    absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bib/R -> /usr/share/R/texmf/bibtex/bib
    absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bst/R -> /usr/share/R/texmf/bibtex/bst
    absolute symlink: /usr/share/texlive/texmf-dist/tex/latex/R -> /usr/share/R/texmf/tex/latex
    Duplicate build-ids /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib/debug/usr/bin/Rscript-4.4.3-1.el10_0.aarch64.debug and /builddir/build/BUILDROOT/R-4.4.3-1.el10_0.aarch64/usr/lib/debug/usr/lib64/R/bin/Rscript-4.4.3-1.el10_0.aarch64.debug
Child return code was: 0